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HUA-SHENG CHIU

TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Pediatrics
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Chiu HS. Single-cell multi-omics as a window into the non-coding transcriptome. Hereditas. 2025 Sep 16; 162(1):179. PMID: 40958127; PMCID: PMC12439418.
      Citations:    Fields:    Translation:HumansCells
    2. Chi TH, Lo C, Lin SY, Liang YH, Chang WC, Yeh CY, Chiu HH, Kuo CH. A novel approach for quantifying therapeutic monoclonal antibodies in blood through liquid chromatography-tandem mass spectrometry. Anal Chim Acta. 2025 Oct 15; 1371:344427. PMID: 40825639.
      Citations:    Fields:    Translation:Humans
    3. Chiu HS, Somvanshi S, Chang CT, de Bony de Lavergne EJ, Wei Z, Hsieh CH, Trypsteen W, Scorsone KA, Patel E, Tang TT, Flint DB, Najaf Panah MJ, Kim HR, Rathi P, Lee YW, Woodfield SE, Vasudevan SA, Heczey AA, Gaber MW, Sawakuchi GO, Chen TW, Mestdagh P, Yang X, Sumazin P. Coordinated regulation by lncRNAs results in tight lncRNA-target couplings. Cell Genom. 2025 Aug 13; 5(8):100927. PMID: 40628267; PMCID: PMC12367320.
      Citations: 2     Fields:    Translation:Humans
    4. Sufriyana H, Chen C, Chiu HS, Sumazin P, Yang PY, Kang JH, Su EC. Reply to comment on "Estimating individual risk of catheter-associated urinary tract infections using explainable artificial intelligence on clinical data". Am J Infect Control. 2025 Jul; 53(7):802-803. PMID: 40518195.
      Citations:    Fields:    
    5. Chiu HS, Huang TS, Chen CT, Lin XY, Liao PC, Liou CC, Hsu CC, Somvanshi S, Sumazin P, Hsu PH, Sun CC, Shyu YC. Temporal Regulation of Early-Stage Cytokine Expression in Diabetic Wound Healing Under Negative Pressure Wound Therapy. Int J Mol Sci. 2025 May 13; 26(10). PMID: 40429778; PMCID: PMC12110959.
      Citations: 1     Fields:    Translation:Animals
    6. Su T, Yu X, Hoseini-Ghahfarokhi M, Flint DB, Bright SJ, Antunes JIDS, Martinus DKJ, Manandhar M, Ben Kacem M, Marinello PC, Pereira EJG, Chiu HS, Titt U, Grosshans DR, Schuemann J, Willers H, Paganetti H, Sumazin P, Sawakuchi GO. Differentiation Stage Predicts Radiosensitivity in Mesenchymal-Like Pancreatic Cancer. Int J Radiat Oncol Biol Phys. 2025 Sep 01; 123(1):270-281. PMID: 40180058; PMCID: PMC12333838.
      Citations:    Fields:    Translation:HumansAnimalsCells
    7. Yu X, Sarabia S, Urbicain M, Somvanshi S, Patel R, Tran TM, Yeh YP, Chang KS, Lo YT, Epps J, Scorsone KA, Chiu HS, Hollingsworth EF, Perez CR, Najaf Panah MJ, Zorman B, Finegold M, Goss JA, Alaggio R, Roy A, Fisher KE, Heczey A, Woodfield S, Vasudevan S, Patel K, Chen TW, Lopez-Terrada D, Sumazin P. Asynchronous Transitions from Hepatoblastoma to Carcinoma in High-Risk Pediatric Tumors. bioRxiv. 2024 Dec 27. PMID: 39763896; PMCID: PMC11703271.
      Citations:    
    8. Cheng CN, Tsai YJ, Chiu HH, Chen TW, Lin CH, Lu YS, Kuo CH. Evaluation of the association between bevacizumab concentration and clinical outcomes in patients with breast cancer brain metastasis. Heliyon. 2025 Jan 15; 11(1):e41390. PMID: 39811374; PMCID: PMC11731468.
      Citations:    
    9. Rayguru C, Husnayain A, Chiu HS, Sumazin P, Su EC. Predictive analysis of COVID-19 occurrence and vaccination impacts across the 50 US states. Comput Biol Med. 2025 Feb; 185:109493. PMID: 39626459.
      Citations: 1     Fields:    Translation:HumansCellsPHPublic Health
    10. Sufriyana H, Chen C, Chiu HS, Sumazin P, Yang PY, Kang JH, Su EC, Sufriyana H, Chen C, Chiu HS, Sumazin P, Yang PY, Kang JH, Su EC. Estimating individual risk of catheter-associated urinary tract infections using explainable artificial intelligence on clinical data. Am J Infect Control. 2025 Mar; 53(3):368-374. PMID: 39481544.
      Citations:    Fields:    Translation:Humans
    11. Tai YH, Kao CY, Zhang YP, Chiou YJ, Chiu HH, Thuy TTD, Liao HW. An integrated platform for investigating drug-microbial interactions to support pharmacomicrobiomics studies. Talanta. 2025 Feb 01; 283:127094. PMID: 39467441.
      Citations:    
    12. Wang YW, Hou HA, Lin CC, Lin HY, Chen PZ, Kuo CH, Chiu HH, Chuang CC, Chen YJ, Lin SW. Early Therapeutic Drug Monitoring Optimizes Teicoplanin Use in Febrile Neutropenic Patients with Hematological Malignancies. Adv Ther. 2024 Jul; 41(7):2966-2977. PMID: 38743241.
      Citations:    
    13. Shyu YC, Huang TS, Chiu HS, Sumazin P, Lin XY, Liao PC, Liou CC, Hsu FC, Lin JS, Hsu CC, Hsu PH, Sun CC, Chen CT. Deciphering Early-Stage Molecular Mechanisms of Negative Pressure Wound Therapy in a Murine Model. Int J Mol Sci. 2024 Feb 17; 25(4). PMID: 38397048; PMCID: PMC10888958.
      Citations:    Fields:    Translation:HumansAnimals
    14. Chiu HH, Lin SY, Zhang CG, Tsai CC, Tang SC, Kuo CH. A comparative study of plasma and dried blood spot metabolomics and its application to diabetes mellitus. Clin Chim Acta. 2024 Jan 01; 552:117655. PMID: 37977234.
      Citations:    
    15. Cobos FA, Panah MJN, Epps J, Long X, Man TK, Chiu HS, Chomsky E, Kiner E, Krueger MJ, di Bernardo D, Voloch L, Molenaar J, van Hooff SR, Westermann F, Jansky S, Redell ML, Mestdagh P, Sumazin P. Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes. Genome Biol. 2023 08 01; 24(1):177. PMID: 37528411; PMCID: PMC10394903.
      Citations: 3     Fields:    Translation:HumansCells
    16. Kao CY, Chang CT, Kuo PY, Lin CJ, Chiu HH, Liao HW. Sequential isolation of metabolites and lipids from a single sample to achieve multiomics by using TRIzol reagent. Talanta. 2023 Jun 01; 258:124416. PMID: 36889188.
      Citations:    
    17. Zheng JJ, Wang PW, Huang TW, Yang YJ, Chiu HS, Sumazin P, Chen TW. MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis. Bioinformatics. 2022 09 15; 38(18):4286-4292. PMID: 35876544; PMCID: PMC9477538.
      Citations:    Fields:    
    18. Chiu HH, Tsai YJ, Lo C, Lin CH, Tsai IL, Kuo CH. Development of an efficient mAb quantification assay by LC-MS/MS using rapid on-bead digestion. Anal Chim Acta. 2022 Feb 08; 1193:339319. PMID: 35058007.
      Citations:    
    19. Chiu HH, Tsai YJ, Lo C, Liao HW, Lin CH, Tang SC, Kuo CH. Development of an LC-MS/MS method to simultaneously quantify therapeutic mAbs and estimate hematocrit values in dried blood spot samples. Anal Chim Acta. 2022 Jan 02; 1189:339231. PMID: 34815034.
      Citations:    
    20. Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P, Kjems J. Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs. Nat Biotechnol. 2021 Nov; 39(11):1467. PMID: 34183863.
      Citations:    Fields:    
    21. Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P, Kjems J. The RNA Atlas expands the catalog of human non-coding RNAs. Nat Biotechnol. 2021 11; 39(11):1453-1465. PMID: 34140680.
      Citations: 18     Fields:    Translation:HumansCells
    22. Flint DB, Bright SJ, McFadden CH, Konishi T, Ohsawa D, Turner B, Lin SH, Grosshans DR, Chiu HS, Sumazin P, Shaitelman SF, Sawakuchi GO. Cell lines of the same anatomic site and histologic type show large variability in intrinsic radiosensitivity and relative biological effectiveness to protons and carbon ions. Med Phys. 2021 Jun; 48(6):3243-3261. PMID: 33837540; PMCID: PMC11919485.
      Citations:    Fields:    Translation:HumansCells
    23. Lu WH, Chiu HH, Kuo HC, Chen GY, Chepyala D, Kuo CH. Using matrix-induced ion suppression combined with LC-MS/MS for quantification of trimethylamine-N-oxide, choline, carnitine and acetylcarnitine in dried blood spot samples. Anal Chim Acta. 2021 Mar 08; 1149:338214. PMID: 33551057.
      Citations:    
    24. Chiu HS, Somvanshi S, Chen TW, Sumazin P. Illuminating lncRNA Function Through Target Prediction. Methods Mol Biol. 2021; 2372:263-295. PMID: 34417758.
      Citations: 1     Fields:    Translation:Humans
    25. Hsieh CC, Chiu HH, Wang CH, Kuo CH. Aspirin Modifies Inflammatory Mediators and Metabolomic Profiles and Contributes to the Suppression of Obesity-Associated Breast Cancer Cell Growth. Int J Mol Sci. 2020 Jun 30; 21(13). PMID: 32629916; PMCID: PMC7369784.
      Citations:    
    26. Chiu HH, Kuo CH. Gas chromatography-mass spectrometry-based analytical strategies for fatty acid analysis in biological samples. J Food Drug Anal. 2020 01; 28(1):60-73. PMID: 31883609.
      Citations:    
    27. Lara OD, Wang Y, Asare A, Xu T, Chiu HS, Liu Y, Hu W, Sumazin P, Uppal S, Zhang L, Rauh-Hain JA, Sood AK. Pan-cancer clinical and molecular analysis of racial disparities. Cancer. 2020 02 15; 126(4):800-807. PMID: 31730714; PMCID: PMC6992510.
      Citations: 9     Fields:    Translation:Humans
    28. Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Bartenhagen C, Fischer M, Roberts S, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P, Peltier A, Janoueix-Lerosey I, D'Haene N. Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes. Sci Rep. 2019 Jul 17; 9(1):10536. PMID: 31311990; PMCID: PMC6635357.
      Citations:    Fields:    
    29. Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Bartenhagen C, Fischer M, Roberts S, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P, Peltier A, Janoueix-Lerosey I, D'Haene N. Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes. Sci Rep. 2019 04 05; 9(1):5685. PMID: 30952905; PMCID: PMC6451017.
      Citations: 4     Fields:    Translation:HumansCells
    30. Ustianenko D, Chiu HS, Treiber T, Weyn-Vanhentenryck SM, Treiber N, Meister G, Sumazin P, Zhang C. LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs. Mol Cell. 2018 07 19; 71(2):271-283.e5. PMID: 30029005; PMCID: PMC6238216.
      Citations: 40     Fields:    Translation:HumansAnimalsCells
    31. Chiu HS, Yang X, Sumazin P, Mart?nez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Califano A. The number of titrated microRNA species dictates ceRNA regulation. Nucleic Acids Res. 2018 05 18; 46(9):4354-4369. PMID: 29684207; PMCID: PMC5961349.
      Citations: 17     Fields:    Translation:Humans
    32. Chiu HS, Somvanshi S, Patel E, Chen TW, Singh VP, Zorman B, Patil SL, Pan Y, Chatterjee SS, Cancer Genome Atlas Research Network, Sood AK, Gunaratne PH, Sumazin P. Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. Cell Rep. 2018 04 03; 23(1):297-312.e12. PMID: 29617668; PMCID: PMC5906131.
      Citations: 102     Fields:    Translation:HumansCells
    33. Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK, Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C. Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Rep. 2018 04 03; 23(1):194-212.e6. PMID: 29617660; PMCID: PMC6002769.
      Citations: 107     Fields:    Translation:HumansCells
    34. Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N, Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R, Williams C, Tiezzi DG. A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell. 2018 04 09; 33(4):690-705.e9. PMID: 29622464; PMCID: PMC5959730.
      Citations: 207     Fields:    Translation:Humans
    35. Chiu HH, Liao HW, Shao YY, Lu YS, Lin CH, Tsai IL, Kuo CH. Development of a general method for quantifying IgG-based therapeutic monoclonal antibodies in human plasma using protein G purification coupled with a two internal standard calibration strategy using LC-MS/MS. Anal Chim Acta. 2018 Aug 17; 1019:93-102. PMID: 29625688.
      Citations:    
    36. Chiu HH, Tsai IL, Lu YS, Lin CH, Kuo CH. Development of an LC-MS/MS method with protein G purification strategy for quantifying bevacizumab in human plasma. Anal Bioanal Chem. 2017 Nov; 409(28):6583-6593. PMID: 28963670.
      Citations:    
    37. Chiu HS, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A, Mart?nez MR. High-throughput validation of ceRNA regulatory networks. BMC Genomics. 2017 05 30; 18(1):418. PMID: 28558729; PMCID: PMC5450082.
      Citations: 27     Fields:    Translation:HumansCells
    38. Chiu HH, Tsai SJ, Tseng YJ, Wu MS, Liao WC, Huang CS, Kuo CH. An efficient and robust fatty acid profiling method for plasma metabolomic studies by gas chromatography-mass spectrometry. Clin Chim Acta. 2015 Dec 07; 451(Pt B):183-90. PMID: 26436485.
      Citations:    
    39. Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Mills GB, Califano A, Sumazin P, Silva J. Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. Genome Res. 2015 Feb; 25(2):257-67. PMID: 25378249; PMCID: PMC4315299.
      Citations: 51     Fields:    Translation:HumansCells
    40. Chen GY, Chiu HH, Lin SW, Tseng YJ, Tsai SJ, Kuo CH. Development and application of a comparative fatty acid analysis method to investigate voriconazole-induced hepatotoxicity. Clin Chim Acta. 2015 Jan 01; 438:126-34. PMID: 25150729.
      Citations:    
    41. Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 2011 Oct 14; 147(2):370-81. PMID: 22000015; PMCID: PMC3214599.
      Citations: 383     Fields:    Translation:Humans
    42. Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL. PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis. Proteins. 2008 Aug; 72(2):693-710. PMID: 18260102.
      Citations: 13     Fields:    Translation:Cells
    43. Lo A, Chiu HS, Sung TY, Lyu PC, Hsu WL. Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function. J Proteome Res. 2008 Feb; 7(2):487-96. PMID: 18081245.
      Citations: 10     Fields:    Translation:Cells
    44. Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL. Protein subcellular localization prediction based on compartment-specific features and structure conservation. BMC Bioinformatics. 2007 Sep 08; 8:330. PMID: 17825110; PMCID: PMC2040162.
      Citations: 18     Fields:    Translation:Cells
    45. Lo A, Chiu HS, Sung TY, Hsu WL. Transmembrane helix and topology prediction using hierarchical SVM classifiers and an alternating geometric scoring function. Comput Syst Bioinformatics Conf. 2006; 31-42. PMID: 17369623.
      Citations:    Fields:    Translation:Cells
    46. Su CY, Lo A, Chiu HS, Sung TY, Hsu WL. Protein subcellular localization prediction based on compartment-specific biological features. Comput Syst Bioinformatics Conf. 2006; 325-30. PMID: 17369650.
      Citations: 3     Fields:    Translation:Cells
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