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HUA-SHENG CHIU

TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Pediatrics
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Sufriyana H, Chen C, Chiu HS, Sumazin P, Yang PY, Kang JH, Su EC. Estimating individual risk of catheter-associated urinary tract infections using explainable artificial intelligence on clinical data. Am J Infect Control. 2024 Oct 29. PMID: 39481544.
      Citations:    Fields:    
    2. Shyu YC, Huang TS, Chiu HS, Sumazin P, Lin XY, Liao PC, Liou CC, Hsu FC, Lin JS, Hsu CC, Hsu PH, Sun CC, Chen CT. Deciphering Early-Stage Molecular Mechanisms of Negative Pressure Wound Therapy in a Murine Model. Int J Mol Sci. 2024 Feb 17; 25(4). PMID: 38397048; PMCID: PMC10888958.
      Citations:    Fields:    Translation:HumansAnimals
    3. Cobos FA, Panah MJN, Epps J, Long X, Man TK, Chiu HS, Chomsky E, Kiner E, Krueger MJ, di Bernardo D, Voloch L, Molenaar J, van Hooff SR, Westermann F, Jansky S, Redell ML, Mestdagh P, Sumazin P. Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes. Genome Biol. 2023 08 01; 24(1):177. PMID: 37528411; PMCID: PMC10394903.
      Citations: 3     Fields:    Translation:HumansCells
    4. Zheng JJ, Wang PW, Huang TW, Yang YJ, Chiu HS, Sumazin P, Chen TW. MOCHI: a comprehensive cross-platform tool for amplicon-based microbiota analysis. Bioinformatics. 2022 09 15; 38(18):4286-4292. PMID: 35876544; PMCID: PMC9477538.
      Citations:    Fields:    
    5. Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P, Kjems J. Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs. Nat Biotechnol. 2021 Nov; 39(11):1467. PMID: 34183863.
      Citations:    Fields:    
    6. Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P, Kjems J. The RNA Atlas expands the catalog of human non-coding RNAs. Nat Biotechnol. 2021 11; 39(11):1453-1465. PMID: 34140680.
      Citations: 18     Fields:    Translation:HumansCells
    7. Flint DB, Bright SJ, McFadden CH, Konishi T, Ohsawa D, Turner B, Lin SH, Grosshans DR, Chiu HS, Sumazin P, Shaitelman SF, Sawakuchi GO. Cell lines of the same anatomic site and histologic type show large variability in intrinsic radiosensitivity and relative biological effectiveness to protons and carbon ions. Med Phys. 2021 Jun; 48(6):3243-3261. PMID: 33837540.
      Citations:    Fields:    Translation:HumansCells
    8. Chiu HS, Somvanshi S, Chen TW, Sumazin P. Illuminating lncRNA Function Through Target Prediction. Methods Mol Biol. 2021; 2372:263-295. PMID: 34417758.
      Citations: 1     Fields:    Translation:Humans
    9. Lara OD, Wang Y, Asare A, Xu T, Chiu HS, Liu Y, Hu W, Sumazin P, Uppal S, Zhang L, Rauh-Hain JA, Sood AK. Pan-cancer clinical and molecular analysis of racial disparities. Cancer. 2020 02 15; 126(4):800-807. PMID: 31730714; PMCID: PMC6992510.
      Citations: 9     Fields:    Translation:Humans
    10. Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Bartenhagen C, Fischer M, Roberts S, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P, Peltier A, Janoueix-Lerosey I, D'Haene N. Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes. Sci Rep. 2019 Jul 17; 9(1):10536. PMID: 31311990; PMCID: PMC6635357.
      Citations:    Fields:    
    11. Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Bartenhagen C, Fischer M, Roberts S, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P, Peltier A, Janoueix-Lerosey I, D'Haene N. Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes. Sci Rep. 2019 04 05; 9(1):5685. PMID: 30952905; PMCID: PMC6451017.
      Citations: 4     Fields:    Translation:HumansCells
    12. Ustianenko D, Chiu HS, Treiber T, Weyn-Vanhentenryck SM, Treiber N, Meister G, Sumazin P, Zhang C. LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs. Mol Cell. 2018 07 19; 71(2):271-283.e5. PMID: 30029005; PMCID: PMC6238216.
      Citations: 40     Fields:    Translation:HumansAnimalsCells
    13. Chiu HS, Yang X, Sumazin P, Mart?nez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Califano A. The number of titrated microRNA species dictates ceRNA regulation. Nucleic Acids Res. 2018 05 18; 46(9):4354-4369. PMID: 29684207; PMCID: PMC5961349.
      Citations: 17     Fields:    Translation:Humans
    14. Chiu HS, Somvanshi S, Patel E, Chen TW, Singh VP, Zorman B, Patil SL, Pan Y, Chatterjee SS, Cancer Genome Atlas Research Network, Sood AK, Gunaratne PH, Sumazin P. Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. Cell Rep. 2018 04 03; 23(1):297-312.e12. PMID: 29617668; PMCID: PMC5906131.
      Citations: 102     Fields:    Translation:HumansCells
    15. Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK, Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C. Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Rep. 2018 04 03; 23(1):194-212.e6. PMID: 29617660; PMCID: PMC6002769.
      Citations: 107     Fields:    Translation:HumansCells
    16. Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N, Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R, Williams C, Tiezzi DG. A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell. 2018 04 09; 33(4):690-705.e9. PMID: 29622464; PMCID: PMC5959730.
      Citations: 207     Fields:    Translation:Humans
    17. Chiu HS, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A, Mart?nez MR. High-throughput validation of ceRNA regulatory networks. BMC Genomics. 2017 05 30; 18(1):418. PMID: 28558729; PMCID: PMC5450082.
      Citations: 27     Fields:    Translation:HumansCells
    18. Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Mills GB, Califano A, Sumazin P, Silva J. Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. Genome Res. 2015 Feb; 25(2):257-67. PMID: 25378249; PMCID: PMC4315299.
      Citations: 51     Fields:    Translation:HumansCells
    19. Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 2011 Oct 14; 147(2):370-81. PMID: 22000015; PMCID: PMC3214599.
      Citations: 383     Fields:    Translation:Humans
    20. Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL. PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis. Proteins. 2008 Aug; 72(2):693-710. PMID: 18260102.
      Citations: 13     Fields:    Translation:Cells
    21. Lo A, Chiu HS, Sung TY, Lyu PC, Hsu WL. Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function. J Proteome Res. 2008 Feb; 7(2):487-96. PMID: 18081245.
      Citations: 10     Fields:    Translation:Cells
    22. Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL. Protein subcellular localization prediction based on compartment-specific features and structure conservation. BMC Bioinformatics. 2007 Sep 08; 8:330. PMID: 17825110; PMCID: PMC2040162.
      Citations: 18     Fields:    Translation:Cells
    23. Lo A, Chiu HS, Sung TY, Hsu WL. Transmembrane helix and topology prediction using hierarchical SVM classifiers and an alternating geometric scoring function. Comput Syst Bioinformatics Conf. 2006; 31-42. PMID: 17369623.
      Citations:    Fields:    Translation:Cells
    24. Su CY, Lo A, Chiu HS, Sung TY, Hsu WL. Protein subcellular localization prediction based on compartment-specific biological features. Comput Syst Bioinformatics Conf. 2006; 325-30. PMID: 17369650.
      Citations: 3     Fields:    Translation:Cells
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