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CHENGHANG ZONG

TitleAssociate Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
AddressOne Baylor Plaza
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Niu Y, Luo J, Zong C. Single-cell total-RNA profiling unveils regulatory hubs of transcription factors. Nat Commun. 2024 Jul 15; 15(1):5941. PMID: 39009595; PMCID: PMC11251146.
      Citations: 1     Fields:    Translation:HumansCells
    2. McGovern MM, Hosamani IV, Niu Y, Nguyen KY, Zong C, Groves AK. Expression of Atoh1, Gfi1, and Pou4f3 in the mature cochlea reprograms nonsensory cells into hair cells. Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5):e2304680121. PMID: 38266052; PMCID: PMC10835112.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    3. Niu M, Zong C. From high-throughput transcriptome characterization of individual synaptosomes to constructing the whole-brain connectome. Neuropsychopharmacology. 2024 01; 49(1):325-326. PMID: 37550440; PMCID: PMC10700480.
      Citations:    Fields:    Translation:Cells
    4. Niu M, Zhang Y, Luo J, Sinson JC, Thompson AM, Zong C. Characterization of Cancer Evolution Landscape Based on Accurate Detection of Somatic Mutations in Single Tumor Cells. bioRxiv. 2023 Oct 09. PMID: 37873375; PMCID: PMC10592685.
      Citations:    
    5. Niu M, Zong C. Reply to: Methodological concerns and lack of evidence for single-synapse RNA-seq. Nat Biotechnol. 2023 09; 41(9):1225-1228. PMID: 37500916.
      Citations: 2     Fields:    
    6. Niu M, Cao W, Wang Y, Zhu Q, Luo J, Wang B, Zheng H, Weitz DA, Zong C. Droplet-based transcriptome profiling of individual synapses. Nat Biotechnol. 2023 09; 41(9):1332-1344. PMID: 36646931.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    7. Niu Y, Zhu Q, Zong C. Single-cell Damagenome Profiling by Linear Copying and Splitting based Whole Genome Amplification (LCS-WGA). Bio Protoc. 2022 Mar 20; 12(6):e4357. PMID: 35434195; PMCID: PMC8983167.
      Citations:    
    8. Zhu Q, Niu Y, Gundry M, Zong C. Single-cell damagenome profiling unveils vulnerable genes and functional pathways in human genome toward DNA damage. Sci Adv. 2021 07; 7(27). PMID: 34215579; PMCID: PMC11060043.
      Citations: 3     Fields:    Translation:HumansCells
    9. Shi L, Tan X, Liu X, Yu J, Bota-Rabassedas N, Niu Y, Luo J, Xi Y, Zong C, Creighton CJ, Glenn JS, Wang J, Kurie JM. Addiction to Golgi-resident PI4P synthesis in chromosome 1q21.3-amplified lung adenocarcinoma cells. Proc Natl Acad Sci U S A. 2021 06 22; 118(25). PMID: 34155143; PMCID: PMC8237628.
      Citations: 2     Fields:    Translation:HumansCells
    10. Liu S, Cao W, Niu Y, Luo J, Zhao Y, Hu Z, Zong C. Single-PanIN-seq unveils that ARID1A deficiency promotes pancreatic tumorigenesis by attenuating KRAS-induced senescence. Elife. 2021 05 13; 10. PMID: 33983114; PMCID: PMC8203294.
      Citations:    Fields:    Translation:HumansAnimalsCells
    11. Bota-Rabassedas N, Banerjee P, Niu Y, Cao W, Luo J, Xi Y, Tan X, Sheng K, Ahn YH, Lee S, Parra ER, Rodriguez-Canales J, Albritton J, Weiger M, Liu X, Guo HF, Yu J, Rodriguez BL, Firestone JJA, Mino B, Creighton CJ, Solis LM, Villalobos P, Raso MG, Sazer DW, Gibbons DL, Russell WK, Longmore GD, Wistuba II, Wang J, Chapman HA, Miller JS, Zong C, Kurie JM. Contextual cues from cancer cells govern cancer-associated fibroblast heterogeneity. Cell Rep. 2021 04 20; 35(3):109009. PMID: 33882319; PMCID: PMC8142261.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    12. Yamauchi M, Gibbons DL, Zong C, Fradette JJ, Bota-Rabassedas N, Kurie JM. Fibroblast heterogeneity and its impact on extracellular matrix and immune landscape remodeling in cancer. Matrix Biol. 2020 09; 91-92:8-18. PMID: 32442601.
      Citations: 14     Fields:    Translation:HumansCells
    13. Wang Y, Cao T, Ko J, Shen Y, Zong W, Sheng K, Cao W, Sun S, Cai L, Zhou YL, Zhang XX, Zong C, Weissleder R, Weitz D. Dissolvable Polyacrylamide Beads for High-Throughput Droplet DNA Barcoding. Adv Sci (Weinh). 2020 Apr; 7(8):1903463. PMID: 32328429; PMCID: PMC7175265.
      Citations: 5     Fields:    
    14. Kim IS, Gao Y, Welte T, Wang H, Liu J, Janghorban M, Sheng K, Niu Y, Goldstein A, Zhao N, Bado I, Lo HC, Toneff MJ, Nguyen T, Bu W, Jiang W, Arnold J, Gu F, He J, Jebakumar D, Walker K, Li Y, Mo Q, Westbrook TF, Zong C, Rao A, Sreekumar A, Rosen JM, Zhang XH. Immuno-subtyping of breast cancer reveals distinct myeloid cell profiles and immunotherapy resistance mechanisms. Nat Cell Biol. 2019 09; 21(9):1113-1126. PMID: 31451770; PMCID: PMC6726554.
      Citations: 88     Fields:    Translation:AnimalsCells
    15. Jen HI, Hill MC, Tao L, Sheng K, Cao W, Zhang H, Yu HV, Llamas J, Zong C, Martin JF, Segil N, Groves AK. Transcriptomic and epigenetic regulation of hair cell regeneration in the mouse utricle and its potentiation by Atoh1. Elife. 2019 04 29; 8. PMID: 31033441; PMCID: PMC6504235.
      Citations: 20     Fields:    Translation:AnimalsCells
    16. Sheng K, Zong C. Single-Cell RNA-Seq by Multiple Annealing and Tailing-Based Quantitative Single-Cell RNA-Seq (MATQ-Seq). Methods Mol Biol. 2019; 1979:57-71. PMID: 31028632.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    17. Scavuzzo MA, Hill MC, Chmielowiec J, Yang D, Teaw J, Sheng K, Kong Y, Bettini M, Zong C, Martin JF, Borowiak M. Endocrine lineage biases arise in temporally distinct endocrine progenitors during pancreatic morphogenesis. Nat Commun. 2018 08 22; 9(1):3356. PMID: 30135482; PMCID: PMC6105717.
      Citations: 24     Fields:    Translation:AnimalsCells
    18. Zong CC. Single-cell RNA-seq study determines the ontogeny of macrophages in glioblastomas. Genome Biol. 2017 Dec 21; 18(1):235. PMID: 29262851; PMCID: PMC5738720.
      Citations: 6     Fields:    Translation:HumansCells
    19. Wang H, Tian L, Goldstein A, Liu J, Lo HC, Sheng K, Welte T, Wong STC, Gugala Z, Stossi F, Zong C, Li Z, Mancini MA, Zhang XH. Bone-in-culture array as a platform to model early-stage bone metastases and discover anti-metastasis therapies. Nat Commun. 2017 04 21; 8:15045. PMID: 28429794; PMCID: PMC5413944.
      Citations: 15     Fields:    Translation:HumansAnimalsCells
    20. Tian L, Goldstein A, Wang H, Ching Lo H, Sun Kim I, Welte T, Sheng K, Dobrolecki LE, Zhang X, Putluri N, Phung TL, Mani SA, Stossi F, Sreekumar A, Mancini MA, Decker WK, Zong C, Lewis MT, Zhang XH. Mutual regulation of tumour vessel normalization and immunostimulatory reprogramming. Nature. 2017 04 13; 544(7649):250-254. PMID: 28371798; PMCID: PMC5788037.
      Citations: 237     Fields:    Translation:HumansAnimalsCells
    21. Sheng K, Cao W, Niu Y, Deng Q, Zong C. Effective detection of variation in single-cell transcriptomes using MATQ-seq. Nat Methods. 2017 03; 14(3):267-270. PMID: 28092691.
      Citations: 66     Fields:    Translation:HumansCells
    22. Lu S, Zong C, Fan W, Yang M, Li J, Chapman AR, Zhu P, Hu X, Xu L, Yan L, Bai F, Qiao J, Tang F, Li R, Xie XS. Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing. Science. 2012 Dec 21; 338(6114):1627-30. PMID: 23258895; PMCID: PMC3590491.
      Citations: 134     Fields:    Translation:HumansCells
    23. Zong C, Lu S, Chapman AR, Xie XS. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science. 2012 Dec 21; 338(6114):1622-6. PMID: 23258894; PMCID: PMC3600412.
      Citations: 425     Fields:    Translation:HumansCells
    24. So LH, Ghosh A, Zong C, Segev R, Golding I, Sep?lveda LA. General properties of transcriptional time series in Escherichia coli. Nat Genet. 2011 Jun; 43(6):554-60. PMID: 21532574; PMCID: PMC3102781.
      Citations: 165     Fields:    Translation:Cells
    25. Zong C, So LH, Skinner SO, Golding I, Sep?lveda LA. Lysogen stability is determined by the frequency of activity bursts from the fate-determining gene. Mol Syst Biol. 2010 Nov 30; 6:440. PMID: 21119634; PMCID: PMC3010116.
      Citations: 43     Fields:    Translation:Cells
    26. Zeng L, Skinner SO, Zong C, Sippy J, Feiss M, Golding I. Decision making at a subcellular level determines the outcome of bacteriophage infection. Cell. 2010 May 14; 141(4):682-91. PMID: 20478257; PMCID: PMC2873970.
      Citations: 107     Fields:    Translation:Cells
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