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Muchun NIU

TitlePostdoc Fellows and Associates
InstitutionBaylor College of Medicine
DepartmentPostDoc
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Zhang Y, Niu M, Zong C. SigFormer: an Attention-Based Framework for Robust Single-Sample Mutational Signature Decomposition. bioRxiv. 2026 Jan 21. PMID: 41648438; PMCID: PMC12871590.
      Citations:    
    2. Zhang Y, Viswanadham VV, Andreopoulos M, Glodzik D, Liu R, Luquette LJ, Jo SY, Narayan A, Niu M, Anderson L, Brew JA, Chao H, Cibulskis C, Dong G, Evani US, Feng WC, Gronska-Peski M, Helland A, Hilal N, Jabara NT, Jin H, Li N, Manam MD, Mallett SL, Runnels A, Scharlee C, Smith C, SMaHT Duplex Sequencing Focus Group, Shao D, Walsh CA, Adalsteinsson VA, Lee EA, Park PJ, Ardlie KG, Germer S, Gibbs RA, Choudhury S, Doddapaneni HV, Evrony GD, Zong C, Coorens THH. Benchmarking of duplex sequencing approaches to reveal somatic mutation landscapes. bioRxiv. 2025 Dec 15. PMID: 41446189; PMCID: PMC12724167.
      Citations:    
    3. Zhang Y, Chao H, Niu M, Grochowski CM, Kottapalli K, Bhamidipati SV, Muzny DM, Gibbs RA, Zong C, Doddapaneni HV. Expanding the Genome in a Bottle Truth Set: Detection and Validation of Novel Low-frequency Variants Using High-accuracy NanoSeq. bioRxiv. 2025 Dec 06. PMID: 41573841; PMCID: PMC12822697.
      Citations:    
    4. Niu M, Zong C. From high-throughput transcriptome characterization of individual synaptosomes to constructing the whole-brain connectome. Neuropsychopharmacology. 2024 01; 49(1):325-326. PMID: 37550440; PMCID: PMC10700480.
      Citations:    Fields:    Translation:Cells
    5. Niu M, Zhang Y, Luo J, Sinson JC, Thompson AM, Zong C. Characterization of Cancer Evolution Landscape Based on Accurate Detection of Somatic Mutations in Single Tumor Cells. bioRxiv. 2023 Oct 09. PMID: 37873375; PMCID: PMC10592685.
      Citations:    
    6. Niu M, Zong C. Reply to: Methodological concerns and lack of evidence for single-synapse RNA-seq. Nat Biotechnol. 2023 09; 41(9):1225-1228. PMID: 37500916.
      Citations: 2     Fields:    
    7. Niu M, Cao W, Wang Y, Zhu Q, Luo J, Wang B, Zheng H, Weitz DA, Zong C. Droplet-based transcriptome profiling of individual synapses. Nat Biotechnol. 2023 09; 41(9):1332-1344. PMID: 36646931.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    8. Zhang W, Bado IL, Hu J, Wan YW, Wu L, Wang H, Gao Y, Jeong HH, Xu Z, Hao X, Lege BM, Al-Ouran R, Li L, Li J, Yu L, Singh S, Lo HC, Niu M, Liu J, Jiang W, Li Y, Wong STC, Cheng C, Liu Z, Zhang XH. The bone microenvironment invigorates metastatic seeds for further dissemination. Cell. 2021 04 29; 184(9):2471-2486.e20. PMID: 33878291; PMCID: PMC8087656.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
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