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JEFFREY ROGERS

TitleAssociate Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
AddressOne Baylor Plaza
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    Other Positions
    TitleAssociate Professor
    InstitutionBaylor College of Medicine
    DepartmentHuman Genome Sequencing Center
    DivisionHuman Genome Sequencing Center


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Rogers JM, Chentsova VO, Wang CX, Marcondes MCG, Cherner M, Ellis RJ, Letendre SL, Heaton RK, Grant I, Iudicello JE. Cannabis Use Moderates Methamphetamine- and HIV-Related Inflammation: Evidence from Human Plasma Markers. Viruses. 2025 Aug 20; 17(8). PMID: 40872856; PMCID: PMC12390692.
      Citations:    Fields:    Translation:Humans
    2. Ramasamy R, Raveendran M, Harris RA, Le HD, Mure LS, Benegiamo G, Dkhissi-Benyahya O, Cooper H, Rogers J, Panda S. Genome-wide allele-specific expression in multi-tissue samples from healthy male baboons reveals the transcriptional complexity of mammals. Cell Genom. 2025 May 14; 5(5):100823. PMID: 40187355; PMCID: PMC12143330.
      Citations:    Fields:    Translation:HumansAnimals
    3. Hill K, Rogers JM, Grundmann O, Epstein DH, Smith KE. At least four groups of kratom consumers in the United States: latent-class analysis of motivations for kratom use. Am J Drug Alcohol Abuse. 2025 Mar 04; 51(2):191-203. PMID: 39883932.
      Citations:    Fields:    Translation:HumansAnimals
    4. El-Helou R, Ryan B, Rogers JM, Marsden DL, Winkler A, Baillie A, Elhindi J, Gallagher L, Kneebone I. Evaluating the Online Mood Assessment Post Stroke (O-MAPS) training: a phase II randomized-controlled trial. Top Stroke Rehabil. 2025 Sep; 32(6):595-607. PMID: 40778732.
      Citations:    Fields:    Translation:HumansCTClinical Trials
    5. van Bohemen SJ, Rogers JM, Alavanja A, Evans A, Young N, Boughton PC, Valderrama JT, Kyme AZ. Safety, feasibility, and acceptability of a novel device to monitor ischaemic stroke patients. J Med Eng Technol. 2024 Jul; 48(5):173-185. PMID: 39400105.
      Citations:    
    6. Rogers JM, Colvin K, Epstein DH, Grundmann O, McCurdy CR, Smith KE. Growing pains with kratom: experiences discussed in subreddits contrast with satisfaction expressed in surveys. Front Pharmacol. 2024; 15:1412397. PMID: 38948457; PMCID: PMC11211595.
      Citations:    
    7. Rassaby M, Rogers JM, Taylor CT. Validation of the Approach-Avoidance Temperament Questionnaire in Individuals with Anxiety and Depression. J Pers Assess. 2025 Jan-Feb; 107(1):114-126. PMID: 38776435; PMCID: PMC11582082.
      Citations:    
    8. Rogers JM, Weiss ST, Epstein DH, Grundmann O, Hill K, Smith KE. Kratom addiction per DSM-5 SUD criteria, and kratom physical dependence: Insights from dosing amount versus frequency. Drug Alcohol Depend. 2024 Jul 01; 260:111329. PMID: 38788532; PMCID: PMC11493341.
      Citations:    
    9. Zamarripa CA, Spindle TR, Panlilio LV, Strickland JC, Feldman JD, Novak MD, Epstein DH, Dunn KE, McCurdy CR, Sharma A, Kuntz MA, Mukhopadhyay S, Raju KSR, Rogers JM, Smith KE. Effects of kratom on driving: Results from a cross-sectional survey, ecological momentary assessment, and pilot simulated driving Study. Traffic Inj Prev. 2024; 25(4):594-603. PMID: 38497810; PMCID: PMC11149710.
      Citations:    
    10. Stolwyk RJ, Mihaljcic T, Wong DK, Hernandez DR, Wolff B, Rogers JM. Post-stroke Cognition is Associated with Stroke Survivor Quality of Life and Caregiver Outcomes: A Systematic Review and Meta-analysis. Neuropsychol Rev. 2024 Dec; 34(4):1235-1264. PMID: 38466357; PMCID: PMC11607063.
      Citations:    
    11. Smith KE, Rogers JM, Sharma A, McCurdy CR, Weiss ST, Dunn KE, Feldman JD, Kuntz MA, Mukhopadhyay S, Raju KSR, Taylor RC, Epstein DH. Responses to a "Typical" Morning Dose of Kratom in People Who Use Kratom Regularly: A Direct-Observation Study. J Addict Med. 2024 Mar-Apr 01; 18(2):144-152. PMID: 38174871; PMCID: PMC10939942.
      Citations:    
    12. Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F, Christmas MJ, Clawson H, Haeussler M, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J, Rouselle M, Silva FE, Agueda L, Blanc J, Gut M, de Vries D, Goodhead I, Harris RA, Raveendran M, Jensen A, Chuma IS, Horvath JE, Hvilsom C, Juan D, Frandsen P, Schraiber JG, de Melo FR, Bertuol F, Byrne H, Sampaio I, Farias I, Valsecchi J, Messias M, da Silva MNF, Trivedi M, Rossi R, Hrbek T, Andriaholinirina N, Rabarivola CJ, Zaramody A, Jolly CJ, Phillips-Conroy J, Wilkerson G, Abee C, Simmons JH, Fernandez-Duque E, Kanthaswamy S, Shiferaw F, Wu D, Zhou L, Shao Y, Zhang G, Keyyu JD, Knauf S, Le MD, Lizano E, Merker S, Navarro A, Nadler T, Khor CC, Lee J, Tan P, Lim WK, Kitchener AC, Zinner D, Gut I, Melin AD, Guschanski K, Schierup MH, Beck RMD, Karakikes I, Wang KC, Umapathy G, Roos C, Boubli JP, Siepel A, Kundaje A, Paten B, Lindblad-Toh K, Rogers J, Marques Bonet T, Farh KK. Identification of constrained sequence elements across 239 primate genomes. Nature. 2024 Jan; 625(7996):735-742. PMID: 38030727; PMCID: PMC10808062.
      Citations:    Fields:    Translation:HumansAnimalsCells
    13. Panlilio LV, Burgess-Hull AJ, Feldman JD, Rogers JM, Tyburski M, Smith KE, Epstein DH. Activity space during treatment with medication for opioid use disorder: Relationships with personality, mood, and drug use. J Subst Use Addict Treat. 2024 02; 157:209219. PMID: 37981240; PMCID: PMC10922786.
      Citations:    
    14. Rogers JM, Iudicello JE, Marcondes MCG, Morgan EE, Cherner M, Ellis RJ, Letendre SL, Heaton RK, Grant I. Reply to Augello, P.A.; Wu, J. Comment on "Rogers et al. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. Viruses 2023, 15, 674". Viruses. 2023 09 05; 15(9). PMID: 37766283; PMCID: PMC10534708.
      Citations:    
    15. Rogers JM, Grant I, Marcondes MCG, Morgan EE, Cherner M, Ellis RJ, Letendre SL, Heaton RK, Iudicello JE. Cannabis use may attenuate neurocognitive performance deficits resulting from methamphetamine use disorder. J Int Neuropsychol Soc. 2024 01; 30(1):84-93. PMID: 37553288; PMCID: PMC10841263.
      Citations:    
    16. Embrechts E, McGuckian TB, Rogers JM, Dijkerman CH, Steenbergen B, Wilson PH, Nijboer TCW. Cognitive and Motor Therapy After Stroke Is Not Superior to Motor and Cognitive Therapy Alone to Improve Cognitive and Motor Outcomes: New Insights From a Meta-analysis. Arch Phys Med Rehabil. 2023 10; 104(10):1720-1734. PMID: 37295704.
      Citations:    
    17. Smith KE, Feldman JD, Dunn KE, McCurdy CR, Grundmann O, Garcia-Romeu A, Panlilio LV, Rogers JM, Sharma A, Pont-Fernandez S, Kheyfets M, Epstein DH. Novel methods for the remote investigation of emerging substances: Application to kratom. Exp Clin Psychopharmacol. 2024 Apr; 32(2):215-227. PMID: 37213182; PMCID: PMC10663387.
      Citations:    
    18. Smith KE, Rogers JM, Feldman JD. Kratom's Emergence and Persistence Within the US Polydrug Epidemic. Curr Addict Rep. 2023; 10(2):262-271. PMID: 37266191; PMCID: PMC10111073.
      Citations:    
    19. Rogers JM, Iudicello JE, Marcondes MCG, Morgan EE, Cherner M, Ellis RJ, Letendre SL, Heaton RK, Grant I. The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition. Viruses. 2023 03 03; 15(3). PMID: 36992383; PMCID: PMC10058939.
      Citations:    
    20. van Bohemen SJ, Rogers JM, Boughton PC, Clarke JL, Valderrama JT, Kyme AZ. Continuous non-invasive estimates of cerebral blood flow using electrocardiography signals: a feasibility study. Biomed Eng Lett. 2023 May; 13(2):185-195. PMID: 37124110; PMCID: PMC10130316.
      Citations:    
    21. McGuckian TB, Wilson PH, Johnston RD, Rahimi-Golkhandan S, Piek J, Green D, Rogers JM, Maruff P, Steenbergen B, Ruddock S. Development of complex executive function over childhood: Longitudinal growth curve modeling of performance on the Groton Maze Learning Task. Child Dev. 2023 05; 94(3):648-658. PMID: 36593650.
      Citations:    
    22. El-Helou R, Rogers JM, Ryan B, Marsden DL, Winkler A, Baillie A, Kneebone I. Evaluating the feasibility and acceptability of the Mood Assessment Post-Stroke (MAPS) mood screening training. Brain Impair. 2023 12; 24(3):679-695. PMID: 38167361.
      Citations:    
    23. Alan Harris R, Archer KJ, Goodarzi MO, York TP, Rogers J, Dunaif A, McAllister JM, Strauss JF. Loci on chromosome 12q13.2 encompassing ERBB3, PA2G4 and RAB5B are associated with polycystic ovary syndrome. Gene. 2023 Feb 05; 852:147062. PMID: 36423778; PMCID: PMC9811427.
      Citations: 2     Fields:    
    24. Pont-Fernandez S, Kheyfets M, Rogers JM, Smith KE, Epstein DH. Kava (Piper methysticum) in the United States: the quiet rise of a substance with often subtle effects. Am J Drug Alcohol Abuse. 2023 01 02; 49(1):85-96. PMID: 36410029.
      Citations:    
    25. Smith KE, Dunn KE, Rogers JM, Garcia-Romeu A, Strickland JC, Epstein DH. Assessment of Kratom Use Disorder and Withdrawal Among an Online Convenience Sample of US Adults. J Addict Med. 2022 Nov-Dec 01; 16(6):666-670. PMID: 35220331; PMCID: PMC9402806.
      Citations:    
    26. Rogers JM, Smith KE, Schriefer D, Epstein DH. For Better or Worse: Self-reported Changes in Kratom and Other Substance Use as a Result of the COVID-19 Pandemic. Subst Abuse. 2022; 16:11782218221123977. PMID: 36199697; PMCID: PMC9527987.
      Citations:    
    27. Smith KE, Dunn KE, Rogers JM, Grundmann O, McCurdy CR, Garcia-Romeu A, Schriefer D, Swogger MT, Epstein DH. Kratom use as more than a "self-treatment". Am J Drug Alcohol Abuse. 2022 11 02; 48(6):684-694. PMID: 35767669; PMCID: PMC10927006.
      Citations:    
    28. Small R, Wilson PH, Wong D, Rogers JM. Who, what, when, where, why, and how: A systematic review of the quality of post-stroke cognitive rehabilitation protocols. Ann Phys Rehabil Med. 2022 Sep; 65(5):101623. PMID: 34933125.
      Citations:    
    29. Smith KE, Rogers JM, Dunn KE, Grundmann O, McCurdy CR, Schriefer D, Epstein DH. Searching for a Signal: Self-Reported Kratom Dose-Effect Relationships Among a Sample of US Adults With Regular Kratom Use Histories. Front Pharmacol. 2022; 13:765917. PMID: 35300296; PMCID: PMC8921773.
      Citations:    
    30. Rogers J. Genomic resources for rhesus macaques (Macaca mulatta). Mamm Genome. 2022 03; 33(1):91-99. PMID: 34999909; PMCID: PMC8742695.
      Citations:    Fields:    Translation:Animals
    31. Smith KE, Dunn KE, Epstein DH, Feldman JD, Garcia-Romeu A, Grundmann O, Henningfield JE, McCurdy CR, Rogers JM, Schriefer D, Singh D, Weiss ST. Need for clarity and context in case reports on kratom use, assessment, and intervention. Subst Abus. 2022; 43(1):1221-1224. PMID: 35657649.
      Citations:    
    32. Rogers JM, Smith KE, Strickland JC, Epstein DH. Kratom Use in the US: Both a Regional Phenomenon and a White Middle-Class Phenomenon? Evidence From NSDUH 2019 and an Online Convenience Sample. Front Pharmacol. 2021; 12:789075. PMID: 34987402; PMCID: PMC8721145.
      Citations:    
    33. Smith KE, Rogers JM, Strickland JC. Associations of Lifetime Nonmedical Opioid, Methamphetamine, and Kratom Use within a Nationally Representative US Sample. J Psychoactive Drugs. 2022 Nov-Dec; 54(5):429-439. PMID: 34842079; PMCID: PMC9148372.
      Citations:    
    34. Wilson PH, Rogers JM, Vogel K, Steenbergen B, McGuckian TB, Duckworth J. Home-based (virtual) rehabilitation improves motor and cognitive function for stroke patients: a randomized controlled trial of the Elements (EDNA-22) system. J Neuroeng Rehabil. 2021 11 25; 18(1):165. PMID: 34823545; PMCID: PMC8613521.
      Citations:    
    35. Rogers JM, Epstein DH, Phillips K, Strickland JC, Preston KL. Exploring the Relationship Between Substance Use and Allostatic Load in a Treatment/Research Cohort and in a US Probability Sample (NHANES 2009-2016). Front Psychiatry. 2021; 12:630195. PMID: 34408672; PMCID: PMC8367194.
      Citations:    
    36. Smith KE, Rogers JM, Schriefer D, Grundmann O. Therapeutic benefit with caveats?: Analyzing social media data to understand the complexities of kratom use. Drug Alcohol Depend. 2021 09 01; 226:108879. PMID: 34216869; PMCID: PMC8355181.
      Citations:    
    37. Stevens DJ, Alghwiri A, Appleton SL, Rogers JM, Plummer SL, Grant C, Bickley K, Alvaro PK, Kennett S, Adams R, Holtzhausen L. Should We Lose Sleep Over Sleep Disturbances After Sports-Related Concussion? A Scoping Review of the Literature. J Head Trauma Rehabil. 2022 May-Jun 01; 37(3):E206-E219. PMID: 34145161.
      Citations:    
    38. Fox AS, Harris RA, Rosso LD, Raveendran M, Kamboj S, Kinnally EL, Capitanio JP, Rogers J. Infant inhibited temperament in primates predicts adult behavior, is heritable, and is associated with anxiety-relevant genetic variation. Mol Psychiatry. 2021 11; 26(11):6609-6618. PMID: 34035480; PMCID: PMC8613309.
      Citations:    
    39. Guevara EE, Webster TH, Lawler RR, Bradley BJ, Greene LK, Harris RA, Liu Y, Murali S, Raveendran M, Hughes DST, Muzny DM, Yoder AD, Worley KC, Rogers J, Ranaivonasy J, Ratsirarson J. Comparative genomic analysis of sifakas (Propithecus) reveals selection for folivory and high heterozygosity despite endangered status. Sci Adv. 2021 04; 7(17). PMID: 33893095; PMCID: PMC8064638.
      Citations: 3     Fields:    
    40. Stolwyk RJ, Mihaljcic T, Wong DK, Chapman JE, Rogers JM. Poststroke Cognitive Impairment Negatively Impacts Activity and Participation Outcomes: A Systematic Review and Meta-Analysis. Stroke. 2021 01; 52(2):748-760. PMID: 33493048.
      Citations:    
    41. Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, Munson KM, DeVogelaere E, Armstrong J, Diekhans M, Walker JA, Tomlinson C, Graves-Lindsay TA, Kremitzki M, Salama SR, Audano PA, Escalona M, Maurer NW, Antonacci F, Mercuri L, Maggiolini FAM, Catacchio CR, Underwood JG, O'Connor DH, Sanders AD, Korbel JO, Ferguson B, Kubisch HM, Picker L, Kalin NH, Rosene D, Levine J, Abbott DH, Gray SB, Sanchez MM, Kovacs-Balint ZA, Kemnitz JW, Thomasy SM, Roberts JA, Kinnally EL, Capitanio JP, Skene JHP, Platt M, Cole SA, Green RE, Ventura M, Wiseman RW, Paten B, Batzer MA, Rogers J, Eichler EE. Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Science. 2020 12 18; 370(6523). PMID: 33335035; PMCID: PMC7818670.
      Citations: 23     Fields:    Translation:HumansAnimals
    42. Houston JR, Hughes ML, Bennett IJ, Allen PA, Rogers JM, Lien MC, Stoltz H, Sakaie K, Loth F, Maleki J, Vorster SJ, Luciano MG. Evidence of Neural Microstructure Abnormalities in Type I Chiari Malformation: Associations Among Fiber Tract Integrity, Pain, and Cognitive Dysfunction. Pain Med. 2020 10 01; 21(10):2323-2335. PMID: 32388548; PMCID: PMC9633327.
      Citations:    
    43. Johnstone SJ, Jiang H, Sun L, Rogers JM, Valderrama J, Zhang D. Development of Frontal EEG Differences Between Eyes-Closed and Eyes-Open Resting Conditions in Children: Data From a Single-Channel Dry-Sensor Portable Device. Clin EEG Neurosci. 2021 Jul; 52(4):235-245. PMID: 32735462.
      Citations:    
    44. Rogers JM, Duckworth J, Middleton S, Steenbergen B, Wilson PH. Elements virtual rehabilitation improves motor, cognitive, and functional outcomes in adult stroke: evidence from a randomized controlled pilot study. J Neuroeng Rehabil. 2019 05 15; 16(1):56. PMID: 31092252; PMCID: PMC6518680.
      Citations:    
    45. Rogers J. Adding resolution and dimensionality to comparative genomics: moving from reference genomes to clade genomics. Genome Biol. 2018 08 14; 19(1):115. PMID: 30107805; PMCID: PMC6090731.
      Citations: 3     Fields:    Translation:HumansAnimals
    46. Rogers JM, Bechara J, Middleton S, Johnstone SJ. Acute EEG Patterns Associated With Transient Ischemic Attack. Clin EEG Neurosci. 2019 May; 50(3):196-204. PMID: 30045636.
      Citations:    
    47. Rogers JM, Foord R, Stolwyk RJ, Wong D, Wilson PH. General and Domain-Specific Effectiveness of Cognitive Remediation after Stroke: Systematic Literature Review and Meta-Analysis. Neuropsychol Rev. 2018 09; 28(3):285-309. PMID: 30006801.
      Citations:    
    48. Aminov A, Rogers JM, Middleton S, Caeyenberghs K, Wilson PH. What do randomized controlled trials say about virtual rehabilitation in stroke? A systematic literature review and meta-analysis of upper-limb and cognitive outcomes. J Neuroeng Rehabil. 2018 03 27; 15(1):29. PMID: 29587853; PMCID: PMC5870176.
      Citations:    
    49. Rogers JM, Savage G, Stoodley MA. A Systematic Review of Cognition in Chiari I Malformation. Neuropsychol Rev. 2018 06; 28(2):176-187. PMID: 29468516.
      Citations:    
    50. Aminov A, Rogers JM, Johnstone SJ, Middleton S, Wilson PH. Acute single channel EEG predictors of cognitive function after stroke. PLoS One. 2017; 12(10):e0185841. PMID: 28968458; PMCID: PMC5624638.
      Citations:    
    51. English AC, Salerno WJ, Hampton OA, Gonzaga-Jauregui C, Ambreth S, Ritter DI, Beck CR, Davis CF, Dahdouli M, Ma S, Carroll A, Veeraraghavan N, Bruestle J, Drees B, Hastie A, Lam ET, White S, Mishra P, Wang M, Han Y, Zhang F, Stankiewicz P, Wheeler DA, Reid JG, Muzny DM, Rogers J, Sabo A, Worley KC, Lupski JR, Boerwinkle E, Gibbs RA. Assessing structural variation in a personal genome-towards a human reference diploid genome. BMC Genomics. 2015 Apr 11; 16:286. PMID: 25886820; PMCID: PMC4490614.
      Citations: 79     Fields:    Translation:Humans
    52. Sabaz M, Simpson GK, Walker AJ, Rogers JM, Gillis I, Strettles B. Prevalence, comorbidities, and correlates of challenging behavior among community-dwelling adults with severe traumatic brain injury: a multicenter study. J Head Trauma Rehabil. 2014 Mar-Apr; 29(2):E19-30. PMID: 23640541.
      Citations:    
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