Christopher J Fields

TitlePostdoc Fellows and Associates
InstitutionBaylor College of Medicine
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Mu?oz KA, Ulrich RJ, Vasan AK, Sinclair M, Wen PC, Holmes JR, Lee HY, Hung CC, Fields CJ, Tajkhorshid E, Lau GW, Hergenrother PJ. A Gram-negative-selective antibiotic that spares the gut microbiome. Nature. 2024 Jun; 630(8016):429-436. PMID: 38811738.
      Citations:    Fields:    Translation:HumansAnimalsCells
    2. Fields C. The free energy principle induces intracellular compartmentalization. Biochem Biophys Res Commun. 2024 Sep 03; 723:150070. PMID: 38896995.
      Citations:    Fields:    
    3. Farjo M, Koelle K, Martin MA, Gibson LL, Walden KKO, Rendon G, Fields CJ, Alnaji FG, Gallagher N, Luo CH, Mostafa HH, Manabe YC, Pekosz A, Smith RL, McManus DD, Brooke CB. Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection. J Virol. 2024 Jan 23; 98(1):e0161823. PMID: 38174928; PMCID: PMC10805032.
      Citations:    Fields:    Translation:HumansCells
    4. Harris NL, Fields CJ, Hokamp K, Just J, Khetani R, Maia J, M?nager H, Munoz-Torres MC, Unni D, Williams J. BOSC 2023, the 24th annual Bioinformatics Open Source Conference. F1000Res. 2023; 12:1568. PMID: 38076297; PMCID: PMC10704065.
      Citations:    Fields:    Translation:Humans
    5. Fujiwara R, Zhai SN, Liang D, Shah AP, Tracey M, Ma XK, Fields CJ, Mendoza-Figueroa MS, Meline MC, Tatomer DC, Yang L, Wilusz JE. IntS6 and the Integrator phosphatase module tune the efficiency of select premature transcription termination events. Mol Cell. 2023 Dec 21; 83(24):4445-4460.e7. PMID: 37995689; PMCID: PMC10841813.
      Citations:    Fields:    Translation:AnimalsCells
    6. Fields C, Levin M. Regulative development as a model for origin of life and artificial life studies. Biosystems. 2023 Jul; 229:104927. PMID: 37211257.
      Citations: 4     Fields:    Translation:Humans
    7. Arora D, Hernandez AG, Walden KKO, Fields CJ, Yan G. First Draft Genome Assembly of Root-Lesion Nematode Pratylenchus scribneri Generated Using Long-Read Sequencing. Int J Mol Sci. 2023 Apr 15; 24(8). PMID: 37108472; PMCID: PMC10138993.
      Citations:    Fields:    Translation:AnimalsCells
    8. Gobin C, Inkabi S, Lattimore CC, Gu T, Menefee JN, Rodriguez M, Kates H, Fields C, Bian T, Silver N, Xing C, Yates C, Renne R, Xie M, Fredenburg KM. Investigating miR-9 as a mediator in laryngeal cancer health disparities. Front Oncol. 2023; 13:1096882. PMID: 37081981; PMCID: PMC10112398.
      Citations: 1     
    9. Brandenburg JT, Clark L, Botha G, Panji S, Baichoo S, Fields C, Hazelhurst S. H3AGWAS: a portable workflow for genome wide association studies. BMC Bioinformatics. 2022 Nov 19; 23(1):498. PMID: 36402955; PMCID: PMC9675212.
      Citations: 2     Fields:    
    10. Geary EL, Oba PM, Applegate CC, Clark LV, Fields CJ, Swanson KS. Effects of a mildly cooked human-grade dog diet on gene expression, skin and coat health measures, and fecal microbiota of healthy adult dogs. J Anim Sci. 2022 Oct 01; 100(10). PMID: 35965387; PMCID: PMC9527297.
    11. Fields C, Levin M. Competency in Navigating Arbitrary Spaces as an Invariant for Analyzing Cognition in Diverse Embodiments. Entropy (Basel). 2022 Jun 12; 24(6). PMID: 35741540; PMCID: PMC9222757.
    12. Ke R, Martinez PP, Smith RL, Gibson LL, Mirza A, Conte M, Gallagher N, Luo CH, Jarrett J, Zhou R, Conte A, Liu T, Farjo M, Walden KKO, Rendon G, Fields CJ, Wang L, Fredrickson R, Edmonson DC, Baughman ME, Chiu KK, Choi H, Scardina KR, Bradley S, Gloss SL, Reinhart C, Yedetore J, Quicksall J, Owens AN, Broach J, Barton B, Lazar P, Heetderks WJ, Robinson ML, Mostafa HH, Manabe YC, Pekosz A, McManus DD, Brooke CB. Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. Nat Microbiol. 2022 05; 7(5):640-652. PMID: 35484231; PMCID: PMC9084242.
      Citations: 5     Fields:    Translation:HumansCells
    13. Kuchling F, Levin M, Fields C. Metacognition as a Consequence of Competing Evolutionary Time Scales. Entropy (Basel). 2022 Apr 26; 24(5). PMID: 35626486; PMCID: PMC9141326.
      Citations: 1     
    14. Ke R, Martinez PP, Smith RL, Gibson LL, Achenbach CJ, McFall S, Qi C, Jacob J, Dembele E, Bundy C, Simons LM, Ozer EA, Hultquist JF, Lorenzo-Redondo R, Opdycke AK, Hawkins C, Murphy RL, Mirza A, Conte M, Gallagher N, Luo CH, Jarrett J, Conte A, Zhou R, Farjo M, Rendon G, Fields CJ, Wang L, Fredrickson R, Baughman ME, Chiu KK, Choi H, Scardina KR, Owens AN, Broach J, Barton B, Lazar P, Robinson ML, Mostafa HH, Manabe YC, Pekosz A, McManus DD, Brooke CB. Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution. Open Forum Infect Dis. 2022 Jul; 9(7):ofac192. PMID: 35791353; PMCID: PMC9047214.
      Citations: 3     
    15. Abdel-Hamid AM, D'Alessandro-Gabazza CN, Yasuma T, Walden KKO, Fields CJ, Gabazza EC, Cann I. Complete Genome Sequences of Three Staphylococcus haemolyticus Strains Isolated from the Lung of a TGF?1 Transgenic Mouse with Lung Fibrosis. Microbiol Resour Announc. 2022 Apr 21; 11(4):e0117621. PMID: 35254127; PMCID: PMC9022589.
    16. Ellis JL, Wang M, Fu X, Fields CJ, Donovan SM, Booth SL. Feeding Practice and Delivery Mode Are Determinants of Vitamin K in the Infant Gut: An Exploratory Analysis. Curr Dev Nutr. 2022 Mar; 6(3):nzac019. PMID: 35295713; PMCID: PMC8921654.
    17. Fields CJ, Li L, Hiers NM, Li T, Sheng P, Huda T, Shan J, Gay L, Gu T, Bian J, Kilberg MS, Renne R, Xie M. Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a. PLoS Genet. 2021 12; 17(12):e1009934. PMID: 34914716; PMCID: PMC8675727.
      Citations:    Fields:    Translation:HumansCells
    18. Oh SH, Schliep K, Isenhower A, Rodriguez-Bobadilla R, Vuong VM, Fields CJ, Hernandez AG, Hoyer LL. Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (ALS) Family in the Saccharomycetales. Front Cell Infect Microbiol. 2021; 11:794529. PMID: 34970511; PMCID: PMC8712946.
      Citations: 3     Fields:    Translation:HumansAnimals
    19. Li L, Sheng P, Li T, Fields CJ, Hiers NM, Wang Y, Li J, Guardia CM, Licht JD, Xie M. Widespread microRNA degradation elements in target mRNAs can assist the encoded proteins. Genes Dev. 2021 12 01; 35(23-24):1595-1609. PMID: 34819352; PMCID: PMC8653786.
      Citations: 3     Fields:    Translation:Cells
    20. Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Sharan M, Williams J. BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference. F1000Res. 2021; 10. PMID: 34721839; PMCID: PMC8524300.
      Citations:    Fields:    Translation:HumansPHPublic Health
    21. Chiu K, Bashir ST, Gao L, Gutierrez J, de Godoy MRC, Drnevich J, Fields CJ, Cann I, Flaws JA, Nowak RA. Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice. Toxics. 2021 Sep 09; 9(9). PMID: 34564366; PMCID: PMC8470982.
      Citations: 1     
    22. Ke R, Martinez PP, Smith RL, Gibson LL, Achenbach CJ, McFall S, Qi C, Jacob J, Dembele E, Bundy C, Simons LM, Ozer EA, Hultquist JF, Lorenzo-Redondo R, Opdycke AK, Hawkins C, Murphy RL, Mirza A, Conte M, Gallagher N, Luo CH, Jarrett J, Conte A, Zhou R, Farjo M, Rendon G, Fields CJ, Wang L, Fredrickson R, Baughman ME, Chiu KK, Choi H, Scardina KR, Owens AN, Broach J, Barton B, Lazar P, Robinson ML, Mostafa HH, Manabe YC, Pekosz A, McManus DD, Brooke CB. Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution. medRxiv. 2021 Sep 02. PMID: 34494028; PMCID: PMC8423226.
      Citations: 1     
    23. Ke R, Martinez PP, Smith RL, Gibson LL, Mirza A, Conte M, Gallagher N, Luo CH, Jarrett J, Conte A, Liu T, Farjo M, Walden KKO, Rendon G, Fields CJ, Wang L, Fredrickson R, Edmonson DC, Baughman ME, Chiu KK, Choi H, Scardina KR, Bradley S, Gloss SL, Reinhart C, Yedetore J, Quicksall J, Owens AN, Broach J, Barton B, Lazar P, Heetderks WJ, Robinson ML, Mostafa HH, Manabe YC, Pekosz A, McManus DD, Brooke CB. Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. medRxiv. 2021 Jul 12. PMID: 34282424; PMCID: PMC8288157.
    24. Stribling D, Lei Y, Guardia CM, Li L, Fields CJ, Nowialis P, Opavsky R, Renne R, Xie M. A noncanonical microRNA derived from the snaR-A noncoding RNA targets a metastasis inhibitor. RNA. 2021 06; 27(6):694-709. PMID: 33795480; PMCID: PMC8127991.
      Citations: 6     Fields:    Translation:HumansCells
    25. Yeoman CJ, Fields CJ, White BA, Lepercq P, Ruiz P, Forano E, Mosoni P. In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. mBio. 2021 03 03; 12(2). PMID: 33658330; PMCID: PMC8092306.
      Citations: 2     Fields:    Translation:AnimalsCells
    26. Ras V, Botha G, Aron S, Lennard K, Allali I, Claassen-Weitz S, Mwaikono KS, Kennedy D, Holmes JR, Rendon G, Panji S, Fields CJ, Mulder N. Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa. PLoS Comput Biol. 2021 02; 17(2):e1008640. PMID: 33630830; PMCID: PMC7906323.
      Citations: 2     Fields:    Translation:Humans
    27. Oh SH, Isenhower A, Rodriguez-Bobadilla R, Smith B, Jones J, Hubka V, Fields C, Hernandez A, Hoyer LL. Pursuing Advances in DNA Sequencing Technology to Solve a Complex Genomic Jigsaw Puzzle: The Agglutinin-Like Sequence (ALS) Genes of Candida tropicalis. Front Microbiol. 2020; 11:594531. PMID: 33552012; PMCID: PMC7856822.
      Citations: 2     
    28. Saw JJ, Sivaguru M, Wilson EM, Dong Y, Sanford RA, Fields CJ, Cregger MA, Merkel AC, Bruce WJ, Weber JR, Lieske JC, Krambeck AE, Rivera ME, Large T, Lange D, Bhattacharjee AS, Romero MF, Chia N, Fouke BW. In Vivo Entombment of Bacteria and Fungi during Calcium Oxalate, Brushite, and Struvite Urolithiasis. Kidney360. 2021 02 25; 2(2):298-311. PMID: 35373025; PMCID: PMC8740987.
      Citations:    Translation:HumansAnimalsCells
    29. Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Taschuk M, Yehudi Y. The 21st annual Bioinformatics Open Source Conference (BOSC 2020, part of BCC2020). F1000Res. 2020; 9. PMID: 32983415; PMCID: PMC7506190.
      Citations: 1     Fields:    Translation:Humans
    30. Tabatabaei SK, Wang B, Athreya NBM, Enghiad B, Hernandez AG, Fields CJ, Leburton JP, Soloveichik D, Zhao H, Milenkovic O. DNA punch cards for storing data on native DNA sequences via enzymatic nicking. Nat Commun. 2020 04 08; 11(1):1742. PMID: 32269230; PMCID: PMC7142088.
      Citations: 7     Fields:    Translation:Cells
    31. D'Alessandro-Gabazza CN, Kobayashi T, Yasuma T, Toda M, Kim H, Fujimoto H, Hataji O, Takeshita A, Nishihama K, Okano T, Okano Y, Nishii Y, Tomaru A, Fujiwara K, D'Alessandro VF, Abdel-Hamid AM, Ren Y, Pereira GV, Wright CL, Hernandez A, Fields CJ, Yau PM, Wang S, Mizoguchi A, Fukumura M, Ohtsuka J, Nosaka T, Kataoka K, Kondoh Y, Wu J, Kawagishi H, Yano Y, Mackie RI, Cann I, Gabazza EC. A Staphylococcus pro-apoptotic peptide induces acute exacerbation of pulmonary fibrosis. Nat Commun. 2020 03 24; 11(1):1539. PMID: 32210242; PMCID: PMC7093394.
      Citations: 18     Fields:    Translation:HumansAnimalsCells
    32. Giordano R, Donthu RK, Zimin AV, Julca Chavez IC, van Munster M, Hon L, Hall R, Badger JH, Nguyen M, Flores A, Potter B, Giray T, Soto-Adames FN, Weber E, Marcelino JAP, Fields CJ, Voegtlin DJ, Hill CB, Hartman GL, Soybean aphid research community, Gabaldon T. Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest. Insect Biochem Mol Biol. 2020 05; 120:103334. PMID: 32109587.
      Citations: 3     Fields:    Translation:Animals
    33. Rashid F, Ramakrishnan A, Fields C, Irudayaraj J. Acute PFOA exposure promotes epigenomic alterations in mouse kidney tissues. Toxicol Rep. 2020; 7:125-132. PMID: 31938689; PMCID: PMC6953769.
      Citations: 10     
    34. Harris NL, Cock PJA, Fields CJ, Heuer M, Hokamp K, Munoz-Torres M, Wiencko H, Yehudi Y, Greshake Tzovaras B, Peltzer A, Rieck B. BOSC 2019, the 20th annual Bioinformatics Open Source Conference. F1000Res. 2019; 8. PMID: 32025286; PMCID: PMC6971845.
      Citations: 2     Fields:    
    35. Serfecz J, Bazick H, Al Salihi MO, Turner P, Fields C, Cruz P, Renne R, Notterpek L. Downregulation of the human peripheral myelin protein 22 gene by miR-29a in cellular models of Charcot-Marie-Tooth disease. Gene Ther. 2019 12; 26(12):455-464. PMID: 31455873; PMCID: PMC6920087.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    36. Ridlon JM, Devendran S, Doden H, Wolf PG, Pereira GV, Ly L, Volland A, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Hernandez AG, Fields CJ, Wright CL, Kakiyama G, Cann I, Kashyap P, McCracken V, Gaskins HR, Alves JM. The 'in vivo lifestyle' of bile acid 7a-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice. Gut Microbes. 2020 05 03; 11(3):381-404. PMID: 31177942; PMCID: PMC7524365.
      Citations: 26     Fields:    Translation:HumansAnimalsCells
    37. Tchouassi DP, Muturi EJ, Arum SO, Kim CH, Fields CJ, Torto B. Host species and site of collection shape the microbiota of Rift Valley fever vectors in Kenya. PLoS Negl Trop Dis. 2019 06; 13(6):e0007361. PMID: 31173595; PMCID: PMC6584011.
      Citations: 1     Fields:    Translation:AnimalsCellsPHPublic Health
    38. Alnaji FG, Holmes JR, Rendon G, Vera JC, Fields CJ, Martin BE, Brooke CB. Sequencing Framework for the Sensitive Detection and Precise Mapping of Defective Interfering Particle-Associated Deletions across Influenza A and B Viruses. J Virol. 2019 06 01; 93(11). PMID: 30867305; PMCID: PMC6532088.
      Citations: 23     Fields:    Translation:HumansCells
    39. Dong Y, Sanford RA, Inskeep WP, Srivastava V, Bulone V, Fields CJ, Yau PM, Sivaguru M, Fouke KW, Weber J, Werth CR, Cann IK, Keating KM, Khetani RS, Hernandez AG, Wright C, Band M, Imai BS, Fried GA, Fouke BW, Ahr?n D. Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology. 2019 12; 19(12):1442-1458. PMID: 31038352; PMCID: PMC6918859.
      Citations: 7     Fields:    Translation:Cells
    40. Oh SH, Smith B, Miller AN, Staker B, Fields C, Hernandez A, Hoyer LL. Agglutinin-Like Sequence (ALS) Genes in the Candida parapsilosis Species Complex: Blurring the Boundaries Between Gene Families That Encode Cell-Wall Proteins. Front Microbiol. 2019; 10:781. PMID: 31105652; PMCID: PMC6499006.
      Citations: 9     
    41. Fields C, Sheng P, Miller B, Wei T, Xie M. Northern Blot with IR Fluorescent Probes: Strategies for Probe Preparation. Bio Protoc. 2019 Apr 20; 9(8). PMID: 31428663; PMCID: PMC6699753.
      Citations: 3     
    42. Mailing LJ, Allen JM, Buford TW, Fields CJ, Woods JA. Exercise and the Gut Microbiome: A Review of the Evidence, Potential Mechanisms, and Implications for Human Health. Exerc Sport Sci Rev. 2019 04; 47(2):75-85. PMID: 30883471.
      Citations: 107     Fields:    Translation:HumansAnimals
    43. Devendran S, Shrestha R, Wolf PG, Ly L, Hernandez AG, Inboden A, Wiley J, Paul O, Allen A, Springer E, Wright CL, Fields CJ, Daniel SL, Ridlon JM, Alves JMP, M?ndez-Garc?a C. Clostridium scindens ATCC 35704: Integration of Nutritional Requirements, the Complete Genome Sequence, and Global Transcriptional Responses to Bile Acids. Appl Environ Microbiol. 2019 04 01; 85(7). PMID: 30737348; PMCID: PMC6585500.
      Citations: 16     Fields:    Translation:HumansCells
    44. Bonnal RJP, Yates A, Goto N, Gautier L, Willis S, Fields C, Katayama T, Prins P. Sharing Programming Resources Between Bio* Projects. Methods Mol Biol. 2019; 1910:747-766. PMID: 31278684; PMCID: PMC7212028.
      Citations: 2     Fields:    
    45. Miller BR, Wei T, Fields CJ, Sheng P, Xie M. Near-infrared fluorescent northern blot. RNA. 2018 12; 24(12):1871-1877. PMID: 30201850; PMCID: PMC6239192.
      Citations: 11     Fields:    Translation:Cells
    46. Harris NL, Wiencko H, Chapman B, Cock PJA, Hokamp K, Lapp H, Fields C, Greshake Tzovaras B. The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). F1000Res. 2018; 7. PMID: 30210780; PMCID: PMC6107976.
      Citations: 1     Fields:    
    47. Muturi EJ, Lagos-Kutz D, Dunlap C, Ramirez JL, Rooney AP, Hartman GL, Fields CJ, Rendon G, Kim CH. Mosquito microbiota cluster by host sampling location. Parasit Vectors. 2018 Aug 14; 11(1):468. PMID: 30107817; PMCID: PMC6092830.
      Citations: 21     Fields:    Translation:AnimalsCellsPHPublic Health
    48. Showmaker KC, Walden KKO, Fields CJ, Lambert KN, Hudson ME. Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) Endosymbiont "Candidatus Cardinium hertigii" Strain cHgTN10. Genome Announc. 2018 Jun 28; 6(26). PMID: 29954916; PMCID: PMC6025951.
      Citations: 2     
    49. Sheng P, Fields C, Aadland K, Wei T, Kolaczkowski O, Gu T, Kolaczkowski B, Xie M. Dicer cleaves 5'-extended microRNA precursors originating from RNA polymerase II transcription start sites. Nucleic Acids Res. 2018 06 20; 46(11):5737-5752. PMID: 29746670; PMCID: PMC6009592.
      Citations: 16     Fields:    Translation:AnimalsCells
    50. Harris SC, Devendran S, Mythen SM, Wright CL, Fields CJ, Hernandez AG, Cann I, Hylemon PB, Ridlon JM, M?ndez-Garc?a C. Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243T. Gut Microbes. 2018 11 02; 9(6):523-539. PMID: 29617190; PMCID: PMC6287680.
      Citations: 25     Fields:    Translation:HumansCells
    51. Herb BR, Shook MS, Fields CJ, Robinson GE. Defense against territorial intrusion is associated with DNA methylation changes in the honey bee brain. BMC Genomics. 2018 03 26; 19(1):216. PMID: 29580210; PMCID: PMC5870497.
      Citations: 13     Fields:    Translation:AnimalsCells
    52. Avalos A, Pan H, Li C, Rendon G, Fields CJ, Brown PJ, Robinson GE, Hudson ME, Zhang G, Acevedo-Gonzalez JP, Giray T. A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee. Nat Commun. 2017 11 16; 8(1):1550. PMID: 29142254; PMCID: PMC5688081.
      Citations: 9     Fields:    Translation:Animals
    53. Harris NL, Cock PJA, Chapman B, Fields CJ, Hokamp K, Lapp H, Munoz-Torres M, Tzovaras BG, Wiencko H. The 2017 Bioinformatics Open Source Conference (BOSC). F1000Res. 2017; 6. PMID: 29118973; PMCID: PMC5649512.
      Citations: 1     Fields:    
    54. Jongeneel CV, Achinike-Oduaran O, Adebiyi E, Adebiyi M, Adeyemi S, Akanle B, Aron S, Ashano E, Bendou H, Botha G, Chimusa E, Choudhury A, Donthu R, Drnevich J, Falola O, Fields CJ, Hazelhurst S, Hendry L, Isewon I, Khetani RS, Kumuthini J, Kimuda MP, Magosi L, Mainzer LS, Maslamoney S, Mbiyavanga M, Meintjes A, Mugutso D, Mpangase P, Munthali R, Nembaware V, Ndhlovu A, Odia T, Okafor A, Oladipo O, Panji S, Pillay V, Rendon G, Sengupta D, Mulder N. Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. PLoS Comput Biol. 2017 Jun; 13(6):e1005419. PMID: 28570565; PMCID: PMC5453403.
      Citations: 5     Fields:    Translation:Humans
    55. Sun J, Zhang Y, Xu T, Zhang Y, Mu H, Zhang Y, Lan Y, Fields CJ, Hui JHL, Zhang W, Li R, Nong W, Cheung FKM, Qiu JW, Qian PY. Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes. Nat Ecol Evol. 2017 Apr 03; 1(5):121. PMID: 28812709.
      Citations: 92     Fields:    
    56. Muturi EJ, Donthu RK, Fields CJ, Moise IK, Kim CH. Effect of pesticides on microbial communities in container aquatic habitats. Sci Rep. 2017 03 16; 7:44565. PMID: 28300212; PMCID: PMC5353589.
      Citations: 21     Fields:    Translation:Animals
    57. Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. Plant Cell. 2016 Nov; 28(11):2700-2714. PMID: 27803309; PMCID: PMC5155341.
      Citations: 65     Fields:    Translation:AnimalsCells
    58. Harris NL, Cock PJ, Chapman B, Fields CJ, Hokamp K, Lapp H, Wiencko H, Mu?oz-Torres M. The 2016 Bioinformatics Open Source Conference (BOSC). F1000Res. 2016; 5. PMID: 27781083; PMCID: PMC5054807.
      Citations: 1     Fields:    
    59. Yeoman CJ, Miller ME, Fields CJ, White BA, Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, Mosoni P. Erratum to: Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. BMC Genomics. 2016 06 06; 17(1):426. PMID: 27267263; PMCID: PMC4896027.
      Citations: 2     Fields:    
    60. Yeoman CJ, Berg Miller ME, Fields CJ, Martens E, White BA, Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Chambon C, Terrapon N, Henrissat B, Mosoni P. Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level. BMC Genomics. 2016 05 04; 17:326. PMID: 27142817; PMCID: PMC4855328.
      Citations: 27     Fields:    Translation:HumansCells
    61. Yeoman CJ, Miller ME, Fields CJ, White BA, Despres J, Forano E, Lepercq P, Comtet-Marre S, Jubelin G, Terrapon N, Le Bourvellec C, Renard CM, Henrissat B, Mosoni P. Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. BMC Genomics. 2016 Feb 27; 17:147. PMID: 26920945; PMCID: PMC4769552.
      Citations: 11     Fields:    Translation:AnimalsCells
    62. Harris NL, Cock PJ, Lapp H, Chapman B, Davey R, Fields C, Hokamp K, Munoz-Torres M. The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Comput Biol. 2016 Feb; 12(2):e1004691. PMID: 26914653; PMCID: PMC4767331.
      Citations:    Fields:    Translation:Humans
    63. Lugli G, Cohen AM, Bennett DA, Shah RC, Fields CJ, Hernandez AG, Smalheiser NR. Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers. PLoS One. 2015; 10(10):e0139233. PMID: 26426747; PMCID: PMC4591334.
      Citations: 150     Fields:    Translation:HumansAnimalsCells
    64. Chu CC, Spencer JL, Fields CJ, Drnevich J, Siegfried BD, Seufferheld MJ, Zavala JA, Curzi MJ. Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts. Evol Appl. 2015 Aug; 8(7):692-704. PMID: 26240606; PMCID: PMC4516421.
      Citations: 3     
    65. Wingfield BD, Ades PK, Al-Naemi FA, Beirn LA, Bihon W, Crouch JA, de Beer ZW, De Vos L, Duong TA, Fields CJ, Fourie G, Kanzi AM, Malapi-Wight M, Pethybridge SJ, Radwan O, Rendon G, Slippers B, Santana QC, Steenkamp ET, Taylor PW, Vaghefi N, van der Merwe NA, Veltri D, Wingfield MJ. IMA Genome-F 4: Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata. IMA Fungus. 2015 Jun; 6(1):233-48. PMID: 26203426; PMCID: PMC4500086.
      Citations: 23     
    66. Foley ME, Horvath DP, Hernandez AG, Khetani RS, Fields CJ, Keating KM, Mikel MA, Anderson JV, Dogramaci M. Glyphosate's impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching. BMC Genomics. 2015 May 19; 16:395. PMID: 25986459; PMCID: PMC4437557.
      Citations: 10     Fields:    Translation:AnimalsCells
    67. Angly FE, Fields CJ, Tyson GW. The Bio-Community Perl toolkit for microbial ecology. Bioinformatics. 2014 Jul 01; 30(13):1926-7. PMID: 24618462; PMCID: PMC4071200.
      Citations: 7     Fields:    Translation:Humans
    68. Aksyuk AA, Bowman VD, Fields C, Klose T, Holdaway HA, Fischetti VA, Rossmann MG, Kaufmann B. Structural investigations of a Podoviridae streptococcus phage C1, implications for the mechanism of viral entry. Proc Natl Acad Sci U S A. 2012 Aug 28; 109(35):14001-6. PMID: 22891295; PMCID: PMC3435189.
      Citations: 14     Fields:    Translation:Cells
    69. Lucas BE, Fields C, Joshi N, Hofmann MC. Mono-(2-ethylhexyl)-phthalate (MEHP) affects ERK-dependent GDNF signalling in mouse stem-progenitor spermatogonia. Toxicology. 2012 Sep 04; 299(1):10-9. PMID: 22564763; PMCID: PMC3377775.
      Citations: 17     Fields:    Translation:AnimalsCells
    70. Prins P, Goto N, Yates A, Gautier L, Willis S, Fields C, Katayama T. Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies. Methods Mol Biol. 2012; 856:513-27. PMID: 22399473.
      Citations: 1     Fields:    
    71. Nowick K, Fields C, Gernat T, Caetano-Anolles D, Kholina N, Stubbs L. Gain, loss and divergence in primate zinc-finger genes: a rich resource for evolution of gene regulatory differences between species. PLoS One. 2011; 6(6):e21553. PMID: 21738707; PMCID: PMC3126818.
      Citations: 35     Fields:    Translation:HumansAnimalsCells
    72. Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res. 2010 Apr; 38(6):1767-71. PMID: 20015970; PMCID: PMC2847217.
      Citations: 483     Fields:    
    73. Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ. Biogeography of the Sulfolobus islandicus pan-genome. Proc Natl Acad Sci U S A. 2009 May 26; 106(21):8605-10. PMID: 19435847; PMCID: PMC2689034.
      Citations: 118     Fields:    Translation:Cells
    74. Lucas B, Fields C, Hofmann MC. Signaling pathways in spermatogonial stem cells and their disruption by toxicants. Birth Defects Res C Embryo Today. 2009 Mar; 87(1):35-42. PMID: 19306349; PMCID: PMC2906709.
      Citations: 14     Fields:    Translation:HumansAnimalsCells
    75. Fields CJ, Chander P, Watt D, Burgner JW, Smith JL, Switzer RL, J?rgensen CM. pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein - characterization and regulation by uridine and guanosine nucleotides. FEBS J. 2008 Feb; 275(4):655-70. PMID: 18190533; PMCID: PMC3232022.
      Citations: 6     Fields:    Translation:Cells
    76. Fields CJ, Switzer RL. Regulation of pyr gene expression in Mycobacterium smegmatis by PyrR-dependent translational repression. J Bacteriol. 2007 Sep; 189(17):6236-45. PMID: 17601781; PMCID: PMC1951914.
      Citations: 7     Fields:    Translation:Cells
    77. Chander P, Halbig KM, Miller JK, Fields CJ, Bonner HK, Grabner GK, Switzer RL, Smith JL. Structure of the nucleotide complex of PyrR, the pyr attenuation protein from Bacillus caldolyticus, suggests dual regulation by pyrimidine and purine nucleotides. J Bacteriol. 2005 Mar; 187(5):1773-82. PMID: 15716449; PMCID: PMC1064020.
      Citations: 12     Fields:    Translation:Cells
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