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ASHUTOSH PANDEY

TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
AddressOne Baylor Plaza
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Naik J, Rajput R, Singh S, Stracke R, Pandey A. Heat-responsive MaHSF11 transcriptional activator positively regulates flavonol biosynthesis and flavonoid B-ring hydroxylation in banana (Musa acuminata). Plant J. 2025 Mar; 121(5):e70084. PMID: 40052345.
      Citations:    Fields:    Translation:AnimalsCells
    2. Lee S, Jeon BW, Seong JY, Lee I, Song HM, Ryu MH, Pandey A, Kim GH, Seo SO, Sung BH, Park SJ, Ryu J, Joo JC. Efficient biological funneling of lignin into 2-pyrone-4,6-dicarboxylic acid via electrocatalytic depolymerization and genetically engineered Pseudomonas putida KT2440. Int J Biol Macromol. 2025 May; 306(Pt 3):141657. PMID: 40032124.
      Citations:    Fields:    Translation:Cells
    3. Sanfilippo A, Pandey A, Akizawa N, Poulaki E, Cunningham E, Bickert M, Lei C, Vannucchi P, Estes ER, Malinverno A, Abe N, Di Stefano A, Filina IY, Fu Q, Gontharet SBL, Kearns LE, Koorapati RK, Loreto MF, Magri L, Menapace W, Pavlovics VL, Pezard PA, Rodriguez-Pilco MA, Shuck BD, Zhao X, Garrido C, Brunelli D, Morishita T, Zitellini N. Heterogeneous Earth's mantle drilled at an embryonic ocean. Nat Commun. 2025 Feb 27; 16(1):2016. PMID: 40016225; PMCID: PMC11868643.
      Citations:    Fields:    
    4. Naik J, Tyagi S, Rajput R, Kumar P, Pucker B, Bisht NC, Misra P, Stracke R, Pandey A. Flavonols affect the interrelated glucosinolate and camalexin biosynthetic pathways in Arabidopsis thaliana. J Exp Bot. 2024 01 01; 75(1):219-240. PMID: 37813680.
      Citations:    
    5. D'Souza LC, Paithankar JG, Stopper H, Pandey A, Sharma A. Environmental Chemical-Induced Reactive Oxygen Species Generation and Immunotoxicity: A Comprehensive Review. Antioxid Redox Signal. 2024 04; 40(10-12):691-714. PMID: 37917110.
      Citations:    
    6. Pandey A, Galeone A, Han SY, Story BA, Consonni G, Mueller WF, Steinmetz LM, Vaccari T, Jafar-Nejad H. Gut barrier defects, intestinal immune hyperactivation and enhanced lipid catabolism drive lethality in NGLY1-deficient Drosophila. Nat Commun. 2023 09 13; 14(1):5667. PMID: 37704604; PMCID: PMC10499810.
      Citations: 1     Fields:    Translation:AnimalsCells
    7. Lail N, Pandey AK, Venkatesh S, Noland RD, Swanson G, Pain D, Branson HM, Suzuki CK, Yoon G. Child Neurology: Progressive Cerebellar Atrophy and Retinal Dystrophy: Clues to an Ultrarare ACO2-Related Neurometabolic Diagnosis. Neurology. 2023 10 10; 101(15):e1567-e1571. PMID: 37460232; PMCID: PMC10585704.
      Citations:    
    8. Pandey A, Galeone A, Han SY, Story BA, Consonni G, Mueller WF, Steinmetz LM, Vaccari T, Jafar-Nejad H. Gut barrier defects, increased intestinal innate immune response, and enhanced lipid catabolism drive lethality in N -glycanase 1 deficient Drosophila. bioRxiv. 2023 Apr 07. PMID: 37066398; PMCID: PMC10104161.
      Citations:    
    9. Pandey A, Mishra AK. Immunomodulation, Toxicity, and Therapeutic Potential of Nanoparticles. BioTech (Basel). 2022 Sep 09; 11(3). PMID: 36134916; PMCID: PMC9497228.
      Citations:    
    10. Rajput R, Tyagi S, Naik J, Pucker B, Stracke R, Pandey A. The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat. Planta. 2022 Aug 29; 256(4):67. PMID: 36038740.
      Citations:    
    11. Rajput R, Naik J, Stracke R, Pandey A. Interplay between R2R3 MYB-type activators and repressors regulates proanthocyanidin biosynthesis in banana (Musa acuminata). New Phytol. 2022 11; 236(3):1108-1127. PMID: 35842782.
      Citations:    
    12. Lakhwani D, Vikarm Dhar Y, Singh S, Pandey A, Kumar Trivedi P, Hasan Asif M. Genome wide identification of MADS box gene family in Musa balbisiana and their divergence during evolution. Gene. 2022 Aug 20; 836:146666. PMID: 35690281.
      Citations:    
    13. Sharma H, Sharma A, Rajput R, Sidhu S, Dhillon H, Verma PC, Pandey A, Upadhyay SK. Molecular Characterization, Evolutionary Analysis, and Expression Profiling of BOR Genes in Important Cereals. Plants (Basel). 2022 Mar 29; 11(7). PMID: 35406892; PMCID: PMC9002812.
      Citations:    
    14. Pandey A, Adams JM, Han SY, Jafar-Nejad H. NGLY1 Deficiency, a Congenital Disorder of Deglycosylation: From Disease Gene Function to Pathophysiology. Cells. 2022 03 29; 11(7). PMID: 35406718; PMCID: PMC8997433.
      Citations:    Fields:    Translation:HumansAnimalsCells
    15. Pandey A, Jafar-Nejad H. Tracing the NGLY1 footprints: insights from Drosophila. J Biochem. 2022 Feb 21; 171(2):153-160. PMID: 34270726; PMCID: PMC9005052.
      Citations: 2     Fields:    Translation:HumansAnimals
    16. Lee J, Pandey AK, Venkatesh S, Thilagavathi J, Honda T, Singh K, Suzuki CK. Inhibition of mitochondrial LonP1 protease by allosteric blockade of ATP binding and hydrolysis via CDDO and its derivatives. J Biol Chem. 2022 03; 298(3):101719. PMID: 35151690; PMCID: PMC8921294.
      Citations:    Fields:    Translation:Cells
    17. Srinivasan K, Pandey AK, Livingston A, Venkatesh S. Roles of host mitochondria in the development of COVID-19 pathology: Could mitochondria be a potential therapeutic target? Mol Biomed. 2021 12; 2:38. PMID: 34841263; PMCID: PMC8608434.
      Citations:    
    18. Deb D, Basak S, Kar T, Narsaria U, Castiglione F, Paul A, Pandey A, Srivastava AP. Immunoinformatics based designing a multi-epitope vaccine against pathogenic Chandipura vesiculovirus. J Cell Biochem. 2022 02; 123(2):322-346. PMID: 34729821.
      Citations:    
    19. Naik J, Rajput R, Pucker B, Stracke R, Pandey A. The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula. Plant Mol Biol. 2021 May; 106(1-2):157-172. PMID: 33704646.
      Citations: 7     Fields:    Translation:AnimalsCells
    20. Pandey A, Niknejad N, Jafar-Nejad H. Multifaceted regulation of Notch signaling by glycosylation. Glycobiology. 2021 01 09; 31(1):8-28. PMID: 32472127; PMCID: PMC7799146.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    21. Han SY, Pandey A, Moore T, Galeone A, Duraine L, Cowan TM, Jafar-Nejad H. A conserved role for AMP-activated protein kinase in NGLY1 deficiency. PLoS Genet. 2020 12; 16(12):e1009258. PMID: 33315951; PMCID: PMC7769621.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    22. Van Hout CV, Tachmazidou I, Backman JD, Hoffman JD, Liu D, Pandey AK, Gonzaga-Jauregui C, Khalid S, Ye B, Banerjee N, Li AH, O'Dushlaine C, Marcketta A, Staples J, Schurmann C, Hawes A, Maxwell E, Barnard L, Lopez A, Penn J, Habegger L, Blumenfeld AL, Bai X, O'Keeffe S, Yadav A, Praveen K, Jones M, Salerno WJ, Chung WK, Surakka I, Willer CJ, Hveem K, Leader JB, Carey DJ, Ledbetter DH, Geisinger-Regeneron DiscovEHR Collaboration, Cardon L, Yancopoulos GD, Economides A, Coppola G, Shuldiner AR, Balasubramanian S, Cantor M, Regeneron Genetics Center, Nelson MR, Whittaker J, Reid JG, Marchini J, Overton JD, Scott RA, Abecasis GR, Yerges-Armstrong L, Baras A. Exome sequencing and characterization of 49,960 individuals in the UK Biobank. Nature. 2020 10; 586(7831):749-756. PMID: 33087929; PMCID: PMC7759458.
      Citations:    
    23. Pucker B, Pandey A, Weisshaar B, Stracke R. The R2R3-MYB gene family in banana (Musa acuminata): Genome-wide identification, classification and expression patterns. PLoS One. 2020; 15(10):e0239275. PMID: 33021974; PMCID: PMC7537896.
      Citations:    
    24. Galeone A, Adams JM, Matsuda S, Presa MF, Pandey A, Han SY, Tachida Y, Hirayama H, Vaccari T, Suzuki T, Lutz CM, Affolter M, Zuberi A, Jafar-Nejad H. Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation. Elife. 2020 07 28; 9. PMID: 32720893; PMCID: PMC7394544.
      Citations: 12     Fields:    Translation:AnimalsCells
    25. Pandey A, Harvey BM, Lopez MF, Ito A, Haltiwanger RS, Jafar-Nejad H. Glycosylation of Specific Notch EGF Repeats by O-Fut1 and Fringe Regulates Notch Signaling in Drosophila. Cell Rep. 2019 11 12; 29(7):2054-2066.e6. PMID: 31722217; PMCID: PMC6866671.
      Citations: 8     Fields:    Translation:AnimalsCells
    26. Kerscher B, Barlow JL, Rana BM, Jolin HE, Gogoi M, Bartholomew MA, Jhamb D, Pandey A, Tough DF, van Oosterhout AJM, McKenzie ANJ. BET Bromodomain Inhibitor iBET151 Impedes Human ILC2 Activation and Prevents Experimental Allergic Lung Inflammation. Front Immunol. 2019; 10:678. PMID: 31024538; PMCID: PMC6465521.
      Citations:    
    27. Nimmo GAM, Venkatesh S, Pandey AK, Marshall CR, Hazrati LN, Blaser S, Ahmed S, Cameron J, Singh K, Ray PN, Suzuki CK, Yoon G. Bi-allelic mutations of LONP1 encoding the mitochondrial LonP1 protease cause pyruvate dehydrogenase deficiency and profound neurodegeneration with progressive cerebellar atrophy. Hum Mol Genet. 2019 01 15; 28(2):290-306. PMID: 30304514; PMCID: PMC6322071.
      Citations:    
    28. Pandey A, Li-Kroeger D, Sethi MK, Lee TV, Buettner FF, Bakker H, Jafar-Nejad H. Sensitized genetic backgrounds reveal differential roles for EGF repeat xylosyltransferases in Drosophila Notch signaling. Glycobiology. 2018 11 01; 28(11):849-859. PMID: 30169771; PMCID: PMC6454539.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    29. Bhatia C, Pandey A, Gaddam SR, Hoecker U, Trivedi PK. Low Temperature-Enhanced Flavonol Synthesis Requires Light-Associated Regulatory Components in Arabidopsis thaliana. Plant Cell Physiol. 2018 Oct 01; 59(10):2099-2112. PMID: 30010959.
      Citations:    
    30. O'Brien MA, Weston RM, Sheth NU, Bradley S, Bigbee J, Pandey A, Williams RW, Wolstenholme JT, Miles MF. Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice. Front Genet. 2018; 9:402. PMID: 30319688; PMCID: PMC6166094.
      Citations:    
    31. King GA, Hashemi Shabestari M, Taris KH, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL. Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms. Nucleic Acids Res. 2018 04 20; 46(7):3633-3642. PMID: 29897602; PMCID: PMC5909435.
      Citations:    
    32. Geng H, Bu HF, Liu F, Wu L, Pfeifer K, Chou PM, Wang X, Sun J, Lu L, Pandey A, Bartolomei MS, De Plaen IG, Wang P, Yu J, Qian J, Tan XD. In Inflamed Intestinal Tissues and Epithelial Cells, Interleukin 22?Signaling Increases Expression of H19 Long Noncoding RNA, Which Promotes Mucosal Regeneration. Gastroenterology. 2018 07; 155(1):144-155. PMID: 29621481; PMCID: PMC6475625.
      Citations:    
    33. Pandey A, Jafar-Nejad H. Cell Aggregation Assays to Evaluate the Binding of the Drosophila Notch with Trans-Ligands and its Inhibition by Cis-Ligands. J Vis Exp. 2018 01 02; (131). PMID: 29364239; PMCID: PMC5875548.
      Citations: 1     Fields:    Translation:Animals
    34. Willems SM, Wright DJ, Day FR, Trajanoska K, Joshi PK, Morris JA, Matteini AM, Garton FC, Grarup N, Oskolkov N, Thalamuthu A, Mangino M, Liu J, Demirkan A, Lek M, Xu L, Wang G, Oldmeadow C, Gaulton KJ, Lotta LA, Miyamoto-Mikami E, Rivas MA, White T, Loh PR, Aadahl M, Amin N, Attia JR, Austin K, Benyamin B, Brage S, Cheng YC, Cieszczyk P, Derave W, Eriksson KF, Eynon N, Linneberg A, Lucia A, Massidda M, Mitchell BD, Miyachi M, Murakami H, Padmanabhan S, Pandey A, Papadimitriou I, Rajpal DK, Sale C, Schnurr TM, Sessa F, Shrine N, Tobin MD, Varley I, Wain LV, Wray NR, Lindgren CM, MacArthur DG, Waterworth DM, McCarthy MI, Pedersen O, Khaw KT, Kiel DP, GEFOS Any-Type of Fracture Consortium, Pitsiladis Y, Fuku N, Franks PW, North KN, van Duijn CM, Mather KA, Hansen T, Hansson O, Spector T, Murabito JM, Richards JB, Rivadeneira F, Langenberg C, Perry JRB, Wareham NJ, Scott RA. Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness. Nat Commun. 2017 07 12; 8:16015. PMID: 29313844; PMCID: PMC5510175.
      Citations:    
    35. Bhambhani S, Lakhwani D, Gupta P, Pandey A, Dhar YV, Kumar Bag S, Asif MH, Kumar Trivedi P. Transcriptome and metabolite analyses in Azadirachta indica: identification of genes involved in biosynthesis of bioactive triterpenoids. Sci Rep. 2017 07 11; 7(1):5043. PMID: 28698613; PMCID: PMC5505991.
      Citations:    
    36. Pandey AK, Dixit U, Kholodovych V, Comollo TW, Pandey VN. The ?1'-?2' Motif of the RNase H Domain of Human Immunodeficiency Virus Type 1 Reverse Transcriptase Is Responsible for Conferring Open Conformation to the p66 Subunit by Displacing the Connection Domain from the Polymerase Cleft. Biochemistry. 2017 07 11; 56(27):3434-3442. PMID: 28627879.
      Citations:    Fields:    Translation:Cells
    37. Lee TV, Pandey A, Jafar-Nejad H. Xylosylation of the Notch receptor preserves the balance between its activation by trans-Delta and inhibition by cis-ligands in Drosophila. PLoS Genet. 2017 04; 13(4):e1006723. PMID: 28394891; PMCID: PMC5402982.
      Citations: 13     Fields:    Translation:AnimalsCells
    38. Mulligan MK, Mozhui K, Pandey AK, Smith ML, Gong S, Ingels J, Miles MF, Lopez MF, Lu L, Williams RW. Genetic divergence in the transcriptional engram of chronic alcohol abuse: A laser-capture RNA-seq study of the mouse mesocorticolimbic system. Alcohol. 2017 Feb; 58:61-72. PMID: 27894806; PMCID: PMC5450909.
      Citations:    
    39. Wang X, Pandey AK, Mulligan MK, Williams EG, Mozhui K, Li Z, Jovaisaite V, Quarles LD, Xiao Z, Huang J, Capra JA, Chen Z, Taylor WL, Bastarache L, Niu X, Pollard KS, Ciobanu DC, Reznik AO, Tishkov AV, Zhulin IB, Peng J, Nelson SF, Denny JC, Auwerx J, Lu L, Williams RW. Joint mouse-human phenome-wide association to test gene function and disease risk. Nat Commun. 2016 Feb 02; 7:10464. PMID: 26833085; PMCID: PMC4740880.
      Citations:    
    40. Lu L, Pandey AK, Houseal MT, Mulligan MK. The Genetic Architecture of Murine Glutathione Transferases. PLoS One. 2016; 11(2):e0148230. PMID: 26829228; PMCID: PMC4734686.
      Citations: 6     Fields:    Translation:Animals
    41. Wilk E, Pandey AK, Leist SR, Hatesuer B, Preusse M, Pommerenke C, Wang J, Schughart K. RNAseq expression analysis of resistant and susceptible mice after influenza A virus infection identifies novel genes associated with virus replication and important for host resistance to infection. BMC Genomics. 2015 Sep 02; 16:655. PMID: 26329040; PMCID: PMC4557482.
      Citations:    
    42. Aberg KA, Xie L, Chan RF, Zhao M, Pandey AK, Kumar G, Clark SL, van den Oord EJ. Evaluation of Methyl-Binding Domain Based Enrichment Approaches Revisited. PLoS One. 2015; 10(7):e0132205. PMID: 26177298; PMCID: PMC4503759.
      Citations:    
    43. Pandey A, Khatoon R, Saini S, Vimal D, Patel DK, Narayan G, Chowdhuri DK. Efficacy of methuselah gene mutation toward tolerance of dichlorvos exposure in Drosophila melanogaster. Free Radic Biol Med. 2015 Jun; 83:54-65. PMID: 25746179.
      Citations: 3     Fields:    Translation:Animals
    44. Pandey A, Williams EG, Mouchiroud L, Frochaux M, Andreux PA, Deplancke B, Auwerx J. An evolutionarily conserved role for the aryl hydrocarbon receptor in the regulation of movement. PLoS Genet. 2014 Sep; 10(9):e1004673. PMID: 25255223; PMCID: PMC4177751.
      Citations: 25     Fields:    Translation:HumansAnimalsCells
    45. Pandey A, Vimal D, Chandra S, Saini S, Narayan G, Kar Chowdhuri D. Long-term dietary exposure to low concentration of dichloroacetic acid promoted longevity and attenuated cellular and functional declines in aged Drosophila melanogaster. Age (Dordr). 2014 Jun; 36(3):9628. PMID: 24535708; PMCID: PMC4082589.
      Citations: 6     Fields:    Translation:Animals
    46. Pandey AK, Lu L, Wang X, Homayouni R, Williams RW. Functionally enigmatic genes: a case study of the brain ignorome. PLoS One. 2014; 9(2):e88889. PMID: 24523945; PMCID: PMC3921226.
      Citations:    
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