Connection

JOHN TAINER to Crystallography, X-Ray

This is a "connection" page, showing publications JOHN TAINER has written about Crystallography, X-Ray.
Connection Strength

6.155
  1. Software for the high-throughput collection of SAXS data using an enhanced Blu-Ice/DCS control system. J Synchrotron Radiat. 2010 Nov; 17(6):774-81.
    View in: PubMed
    Score: 0.317
  2. X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution. Q Rev Biophys. 2007 Aug; 40(3):191-285.
    View in: PubMed
    Score: 0.256
  3. Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography. J Struct Biol. 2007 May; 158(2):214-23.
    View in: PubMed
    Score: 0.243
  4. ASCC1 structures and bioinformatics reveal a novel helix-clasp-helix RNA-binding motif linked to a two-histidine phosphodiesterase. J Biol Chem. 2024 Jun; 300(6):107368.
    View in: PubMed
    Score: 0.205
  5. Targeting SARS-CoV-2 Nsp3 macrodomain structure with insights from human poly(ADP-ribose) glycohydrolase (PARG) structures with inhibitors. Prog Biophys Mol Biol. 2021 08; 163:171-186.
    View in: PubMed
    Score: 0.164
  6. Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry. 2018 12 04; 57(48):6688-6700.
    View in: PubMed
    Score: 0.140
  7. Robust Production, Crystallization, Structure Determination, and Analysis of [Fe-S] Proteins: Uncovering Control of Electron Shuttling and Gating in the Respiratory Metabolism of Molybdopterin Guanine Dinucleotide Enzymes. Methods Enzymol. 2018; 599:157-196.
    View in: PubMed
    Score: 0.131
  8. What Combined Measurements From Structures and Imaging Tell Us About DNA Damage Responses. Methods Enzymol. 2017; 592:417-455.
    View in: PubMed
    Score: 0.126
  9. Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor. Structure. 2016 12 06; 24(12):2067-2079.
    View in: PubMed
    Score: 0.122
  10. The R-factor gap in macromolecular crystallography: an untapped potential for insights on accurate structures. FEBS J. 2014 Sep; 281(18):4046-60.
    View in: PubMed
    Score: 0.105
  11. Insights into FlaI functions in archaeal motor assembly and motility from structures, conformations, and genetics. Mol Cell. 2013 Mar 28; 49(6):1069-82.
    View in: PubMed
    Score: 0.094
  12. Conserved structural chemistry for incision activity in structurally non-homologous apurinic/apyrimidinic endonuclease APE1 and endonuclease IV DNA repair enzymes. J Biol Chem. 2013 Mar 22; 288(12):8445-8455.
    View in: PubMed
    Score: 0.094
  13. Ultrahigh resolution and full-length pilin structures with insights for filament assembly, pathogenic functions, and vaccine potential. J Biol Chem. 2011 Dec 23; 286(51):44254-44265.
    View in: PubMed
    Score: 0.086
  14. XRCC4 protein interactions with XRCC4-like factor (XLF) create an extended grooved scaffold for DNA ligation and double strand break repair. J Biol Chem. 2011 Sep 16; 286(37):32638-50.
    View in: PubMed
    Score: 0.084
  15. Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers. 2011 Aug; 95(8):559-71.
    View in: PubMed
    Score: 0.083
  16. Recognition of the ring-opened state of proliferating cell nuclear antigen by replication factor C promotes eukaryotic clamp-loading. J Am Chem Soc. 2010 Jun 02; 132(21):7372-8.
    View in: PubMed
    Score: 0.078
  17. Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell. 2009 Oct 02; 139(1):87-99.
    View in: PubMed
    Score: 0.074
  18. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature. 2009 Jun 11; 459(7248):808-13.
    View in: PubMed
    Score: 0.073
  19. p38alpha MAP kinase C-terminal domain binding pocket characterized by crystallographic and computational analyses. J Mol Biol. 2009 Aug 07; 391(1):1-11.
    View in: PubMed
    Score: 0.073
  20. Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis. J Mol Biol. 2009 Feb 06; 385(5):1534-55.
    View in: PubMed
    Score: 0.070
  21. Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell. 2008 Oct 03; 135(1):97-109.
    View in: PubMed
    Score: 0.069
  22. XPD helicase structures and activities: insights into the cancer and aging phenotypes from XPD mutations. Cell. 2008 May 30; 133(5):789-800.
    View in: PubMed
    Score: 0.068
  23. DNA binding, nucleotide flipping, and the helix-turn-helix motif in base repair by O6-alkylguanine-DNA alkyltransferase and its implications for cancer chemotherapy. DNA Repair (Amst). 2007 Aug 01; 6(8):1100-15.
    View in: PubMed
    Score: 0.063
  24. The intricate structural chemistry of base excision repair machinery: implications for DNA damage recognition, removal, and repair. DNA Repair (Amst). 2007 Apr 01; 6(4):410-28.
    View in: PubMed
    Score: 0.062
  25. Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions. Mol Cell. 2006 Sep 01; 23(5):651-62.
    View in: PubMed
    Score: 0.060
  26. WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat Struct Mol Biol. 2006 May; 13(5):414-22.
    View in: PubMed
    Score: 0.059
  27. Conserved XPB core structure and motifs for DNA unwinding: implications for pathway selection of transcription or excision repair. Mol Cell. 2006 Apr 07; 22(1):27-37.
    View in: PubMed
    Score: 0.058
  28. Structure and function of the double-strand break repair machinery. DNA Repair (Amst). 2004 Aug-Sep; 3(8-9):863-73.
    View in: PubMed
    Score: 0.052
  29. DNA binding and nucleotide flipping by the human DNA repair protein AGT. Nat Struct Mol Biol. 2004 Aug; 11(8):714-20.
    View in: PubMed
    Score: 0.052
  30. Type IV pilus structure and bacterial pathogenicity. Nat Rev Microbiol. 2004 May; 2(5):363-78.
    View in: PubMed
    Score: 0.051
  31. ALS mutants of human superoxide dismutase form fibrous aggregates via framework destabilization. J Mol Biol. 2003 Sep 19; 332(3):601-15.
    View in: PubMed
    Score: 0.049
  32. Full-length archaeal Rad51 structure and mutants: mechanisms for RAD51 assembly and control by BRCA2. EMBO J. 2003 Sep 01; 22(17):4566-76.
    View in: PubMed
    Score: 0.049
  33. Structural basis for recognition and catalysis by the bifunctional dCTP deaminase and dUTPase from Methanococcus jannaschii. J Mol Biol. 2003 Aug 22; 331(4):885-96.
    View in: PubMed
    Score: 0.049
  34. Type IV pilin structure and assembly: X-ray and EM analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin. Mol Cell. 2003 May; 11(5):1139-50.
    View in: PubMed
    Score: 0.048
  35. Characterization of the electrophile binding site and substrate binding mode of the 26-kDa glutathione S-transferase from Schistosoma japonicum. Proteins. 2003 Apr 01; 51(1):137-46.
    View in: PubMed
    Score: 0.047
  36. The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature. 2002 Aug 01; 418(6897):562-6.
    View in: PubMed
    Score: 0.045
  37. Structure and activity of a thermostable thymine-DNA glycosylase: evidence for base twisting to remove mismatched normal DNA bases. J Mol Biol. 2002 Jan 18; 315(3):373-84.
    View in: PubMed
    Score: 0.044
  38. Target highlights in CASP14: Analysis of models by structure providers. Proteins. 2021 12; 89(12):1647-1672.
    View in: PubMed
    Score: 0.043
  39. Structure and mechanism of the RuvB Holliday junction branch migration motor. J Mol Biol. 2001 Aug 10; 311(2):297-310.
    View in: PubMed
    Score: 0.042
  40. Structural biochemistry of a type 2 RNase H: RNA primer recognition and removal during DNA replication. J Mol Biol. 2001 Mar 23; 307(2):541-56.
    View in: PubMed
    Score: 0.041
  41. An atypical BRCT-BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase IIIa within a flexible DNA repair complex. Nucleic Acids Res. 2021 01 11; 49(1):306-321.
    View in: PubMed
    Score: 0.041
  42. Crystal structure and novel recognition motif of rho ADP-ribosylating C3 exoenzyme from Clostridium botulinum: structural insights for recognition specificity and catalysis. J Mol Biol. 2001 Jan 05; 305(1):95-107.
    View in: PubMed
    Score: 0.041
  43. Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog Biophys Mol Biol. 2021 08; 163:130-142.
    View in: PubMed
    Score: 0.040
  44. Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc Natl Acad Sci U S A. 2000 May 09; 97(10):5083-8.
    View in: PubMed
    Score: 0.039
  45. Structures of the N(omega)-hydroxy-L-arginine complex of inducible nitric oxide synthase oxygenase dimer with active and inactive pterins. Biochemistry. 2000 Apr 25; 39(16):4608-21.
    View in: PubMed
    Score: 0.039
  46. Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding. EMBO J. 2000 Apr 03; 19(7):1719-30.
    View in: PubMed
    Score: 0.039
  47. Active and inhibited human catalase structures: ligand and NADPH binding and catalytic mechanism. J Mol Biol. 2000 Feb 11; 296(1):295-309.
    View in: PubMed
    Score: 0.038
  48. DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]. Nature. 2000 Jan 27; 403(6768):451-6.
    View in: PubMed
    Score: 0.038
  49. Evolution and mechanism from structures of an ADP-ribosylating toxin and NAD complex. Nat Struct Biol. 1999 Oct; 6(10):932-6.
    View in: PubMed
    Score: 0.037
  50. Flexible Tethering of ASPP Proteins Facilitates PP-1c Catalysis. Structure. 2019 10 01; 27(10):1485-1496.e4.
    View in: PubMed
    Score: 0.037
  51. Structure of the DNA repair enzyme endonuclease IV and its DNA complex: double-nucleotide flipping at abasic sites and three-metal-ion catalysis. Cell. 1999 Aug 06; 98(3):397-408.
    View in: PubMed
    Score: 0.037
  52. Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase. J Mol Biol. 1999 Mar 26; 287(2):331-46.
    View in: PubMed
    Score: 0.036
  53. Formylglycine-generating enzyme binds substrate directly at a mononuclear Cu(I) center to initiate O2 activation. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5370-5375.
    View in: PubMed
    Score: 0.036
  54. Crystallographic structure reveals phosphorylated pilin from Neisseria: phosphoserine sites modify type IV pilus surface chemistry and fibre morphology. Mol Microbiol. 1999 Feb; 31(3):743-52.
    View in: PubMed
    Score: 0.036
  55. MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nat Struct Biol. 1998 Dec; 5(12):1058-64.
    View in: PubMed
    Score: 0.035
  56. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J. 1998 Sep 01; 17(17):5214-26.
    View in: PubMed
    Score: 0.034
  57. Characterization of Y122F R2 of Escherichia coli ribonucleotide reductase by time-resolved physical biochemical methods and X-ray crystallography. Biochemistry. 1998 Apr 28; 37(17):5840-8.
    View in: PubMed
    Score: 0.034
  58. Crystal structure of Y34F mutant human mitochondrial manganese superoxide dismutase and the functional role of tyrosine 34. Biochemistry. 1998 Apr 07; 37(14):4722-30.
    View in: PubMed
    Score: 0.034
  59. Structure of nitric oxide synthase oxygenase dimer with pterin and substrate. Science. 1998 Mar 27; 279(5359):2121-6.
    View in: PubMed
    Score: 0.033
  60. Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding. Nat Commun. 2018 02 06; 9(1):512.
    View in: PubMed
    Score: 0.033
  61. Base excision repair enzyme family portrait: integrating the structure and chemistry of an entire DNA repair pathway. Structure. 1997 Dec 15; 5(12):1543-50.
    View in: PubMed
    Score: 0.033
  62. The structure of nitric oxide synthase oxygenase domain and inhibitor complexes. Science. 1997 Oct 17; 278(5337):425-31.
    View in: PubMed
    Score: 0.032
  63. Type-4 pilus-structure: outside to inside and top to bottom--a minireview. Gene. 1997 Jun 11; 192(1):165-9.
    View in: PubMed
    Score: 0.032
  64. Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome. Structure. 2017 01 03; 25(1):157-166.
    View in: PubMed
    Score: 0.031
  65. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA. Nature. 1996 Nov 07; 384(6604):87-92.
    View in: PubMed
    Score: 0.030
  66. Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN. Mol Cell. 2016 11 17; 64(4):688-703.
    View in: PubMed
    Score: 0.030
  67. HU multimerization shift controls nucleoid compaction. Sci Adv. 2016 07; 2(7):e1600650.
    View in: PubMed
    Score: 0.030
  68. RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity That Is Essential for DNA Double Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment. J Biol Chem. 2016 Apr 29; 291(18):9396-410.
    View in: PubMed
    Score: 0.029
  69. Unusual trigonal-planar copper configuration revealed in the atomic structure of yeast copper-zinc superoxide dismutase. Biochemistry. 1996 Feb 20; 35(7):2316-21.
    View in: PubMed
    Score: 0.029
  70. Exploring the repeat protein universe through computational protein design. Nature. 2015 Dec 24; 528(7583):580-4.
    View in: PubMed
    Score: 0.029
  71. The nucleotide-dependent interaction of FlaH and FlaI is essential for assembly and function of the archaellum motor. Mol Microbiol. 2016 Feb; 99(4):674-85.
    View in: PubMed
    Score: 0.028
  72. Structure of the fibre-forming protein pilin at 2.6 A resolution. Nature. 1995 Nov 02; 378(6552):32-8.
    View in: PubMed
    Score: 0.028
  73. Crystal structure of the cell cycle-regulatory protein suc1 reveals a beta-hinge conformational switch. Proc Natl Acad Sci U S A. 1995 Oct 24; 92(22):10232-6.
    View in: PubMed
    Score: 0.028
  74. Structural, Functional, and Immunogenic Insights on Cu,Zn Superoxide Dismutase Pathogenic Virulence Factors from Neisseria meningitidis and Brucella abortus. J Bacteriol. 2015 Dec; 197(24):3834-47.
    View in: PubMed
    Score: 0.028
  75. Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure. EMBO J. 1995 Aug 15; 14(16):4108-20.
    View in: PubMed
    Score: 0.028
  76. Crystal structure of the human cell cycle protein CksHs1: single domain fold with similarity to kinase N-lobe domain. J Mol Biol. 1995 Jun 23; 249(5):835-42.
    View in: PubMed
    Score: 0.028
  77. Purification and crystallization of a schistosomal glutathione S-transferase. Proteins. 1995 May; 22(1):55-7.
    View in: PubMed
    Score: 0.027
  78. FlaF Is a ?-Sandwich Protein that Anchors the Archaellum in the Archaeal Cell Envelope by Binding the S-Layer Protein. Structure. 2015 May 05; 23(5):863-872.
    View in: PubMed
    Score: 0.027
  79. Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis. Cell. 1995 Mar 24; 80(6):869-78.
    View in: PubMed
    Score: 0.027
  80. Structure and function of the multifunctional DNA-repair enzyme exonuclease III. Nature. 1995 Mar 23; 374(6520):381-6.
    View in: PubMed
    Score: 0.027
  81. Crystal structures of a schistosomal drug and vaccine target: glutathione S-transferase from Schistosoma japonica and its complex with the leading antischistosomal drug praziquantel. J Mol Biol. 1995 Feb 10; 246(1):21-7.
    View in: PubMed
    Score: 0.027
  82. Structure of a designed protein cage that self-assembles into a highly porous cube. Nat Chem. 2014 Dec; 6(12):1065-71.
    View in: PubMed
    Score: 0.026
  83. Aggregation propensities of superoxide dismutase G93 hotspot mutants mirror ALS clinical phenotypes. Proc Natl Acad Sci U S A. 2014 Oct 28; 111(43):E4568-76.
    View in: PubMed
    Score: 0.026
  84. Structure and function of the DNA repair enzyme exonuclease III from E. coli. Ann N Y Acad Sci. 1994 Jul 29; 726:223-34; discussion 234-5.
    View in: PubMed
    Score: 0.026
  85. Intact functional fourteen-subunit respiratory membrane-bound [NiFe]-hydrogenase complex of the hyperthermophilic archaeon Pyrococcus furiosus. J Biol Chem. 2014 Jul 11; 289(28):19364-72.
    View in: PubMed
    Score: 0.026
  86. RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response. EMBO Rep. 2014 May; 15(5):601-8.
    View in: PubMed
    Score: 0.025
  87. Interfacial residues promote an optimal alignment of the catalytic center in human soluble guanylate cyclase: heterodimerization is required but not sufficient for activity. Biochemistry. 2014 Apr 08; 53(13):2153-65.
    View in: PubMed
    Score: 0.025
  88. ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. EMBO J. 2014 Mar 03; 33(5):482-500.
    View in: PubMed
    Score: 0.025
  89. Human CksHs2 atomic structure: a role for its hexameric assembly in cell cycle control. Science. 1993 Oct 15; 262(5132):387-95.
    View in: PubMed
    Score: 0.025
  90. Structural insights into the interaction of IL-33 with its receptors. Proc Natl Acad Sci U S A. 2013 Sep 10; 110(37):14918-23.
    View in: PubMed
    Score: 0.024
  91. Sculpting of DNA at abasic sites by DNA glycosylase homolog mag2. Structure. 2013 Jan 08; 21(1):154-166.
    View in: PubMed
    Score: 0.023
  92. Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-p interactions. Proc Natl Acad Sci U S A. 2012 Nov 13; 109(46):18755-60.
    View in: PubMed
    Score: 0.023
  93. Atl1 regulates choice between global genome and transcription-coupled repair of O(6)-alkylguanines. Mol Cell. 2012 Jul 13; 47(1):50-60.
    View in: PubMed
    Score: 0.022
  94. Structure of mammalian poly(ADP-ribose) glycohydrolase reveals a flexible tyrosine clasp as a substrate-binding element. Nat Struct Mol Biol. 2012 May 20; 19(6):653-6.
    View in: PubMed
    Score: 0.022
  95. Structural tuning of the fluorescent protein iLOV for improved photostability. J Biol Chem. 2012 Jun 22; 287(26):22295-304.
    View in: PubMed
    Score: 0.022
  96. Combining H/D exchange mass spectroscopy and computational docking reveals extended DNA-binding surface on uracil-DNA glycosylase. Nucleic Acids Res. 2012 Jul; 40(13):6070-81.
    View in: PubMed
    Score: 0.022
  97. Structure of an essential type IV pilus biogenesis protein provides insights into pilus and type II secretion systems. J Mol Biol. 2012 May 25; 419(1-2):110-24.
    View in: PubMed
    Score: 0.022
  98. Eukaryotic class II cyclobutane pyrimidine dimer photolyase structure reveals basis for improved ultraviolet tolerance in plants. J Biol Chem. 2012 Apr 06; 287(15):12060-9.
    View in: PubMed
    Score: 0.022
  99. DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes. Mol Cell Biol. 2011 Jun; 31(11):2299-310.
    View in: PubMed
    Score: 0.021
  100. The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. J Mol Biol. 2011 Jan 28; 405(4):939-55.
    View in: PubMed
    Score: 0.020
  101. Human DNA ligase III recognizes DNA ends by dynamic switching between two DNA-bound states. Biochemistry. 2010 Jul 27; 49(29):6165-76.
    View in: PubMed
    Score: 0.020
  102. Nitric-oxide synthase forms N-NO-pterin and S-NO-cys: implications for activity, allostery, and regulation. J Biol Chem. 2010 Oct 08; 285(41):31581-9.
    View in: PubMed
    Score: 0.020
  103. Crystal structure of the first eubacterial Mre11 nuclease reveals novel features that may discriminate substrates during DNA repair. J Mol Biol. 2010 Apr 02; 397(3):647-63.
    View in: PubMed
    Score: 0.019
  104. gammaH2A binds Brc1 to maintain genome integrity during S-phase. EMBO J. 2010 Mar 17; 29(6):1136-48.
    View in: PubMed
    Score: 0.019
  105. Contribution of human manganese superoxide dismutase tyrosine 34 to structure and catalysis. Biochemistry. 2009 Apr 21; 48(15):3417-24.
    View in: PubMed
    Score: 0.018
  106. Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009 May; 16(5):509-16.
    View in: PubMed
    Score: 0.018
  107. Functional motifs in the (6-4) photolyase crystal structure make a comparative framework for DNA repair photolyases and clock cryptochromes. Proc Natl Acad Sci U S A. 2009 Apr 28; 106(17):6962-7.
    View in: PubMed
    Score: 0.018
  108. The structure of the MAP2K MEK6 reveals an autoinhibitory dimer. Structure. 2009 Jan 14; 17(1):96-104.
    View in: PubMed
    Score: 0.018
  109. Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair. Nat Struct Mol Biol. 2009 Feb; 16(2):138-43.
    View in: PubMed
    Score: 0.018
  110. Anchored plasticity opens doors for selective inhibitor design in nitric oxide synthase. Nat Chem Biol. 2008 Nov; 4(11):700-7.
    View in: PubMed
    Score: 0.017
  111. The BARD1 C-terminal domain structure and interactions with polyadenylation factor CstF-50. Biochemistry. 2008 Nov 04; 47(44):11446-56.
    View in: PubMed
    Score: 0.017
  112. Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1. J Mol Biol. 2008 Jul 25; 380(5):828-43.
    View in: PubMed
    Score: 0.017
  113. DNA apurinic-apyrimidinic site binding and excision by endonuclease IV. Nat Struct Mol Biol. 2008 May; 15(5):515-22.
    View in: PubMed
    Score: 0.017
  114. Structural characterization of zinc-deficient human superoxide dismutase and implications for ALS. J Mol Biol. 2007 Nov 02; 373(4):877-90.
    View in: PubMed
    Score: 0.016
  115. The case of the missing ring: radical cleavage of a carbon-carbon bond and implications for GFP chromophore biosynthesis. J Am Chem Soc. 2007 Mar 21; 129(11):3118-26.
    View in: PubMed
    Score: 0.016
  116. The C-terminal domain of yeast PCNA is required for physical and functional interactions with Cdc9 DNA ligase. Nucleic Acids Res. 2007; 35(5):1624-37.
    View in: PubMed
    Score: 0.016
  117. Unraveling the three-metal-ion catalytic mechanism of the DNA repair enzyme endonuclease IV. Proc Natl Acad Sci U S A. 2007 Jan 30; 104(5):1465-70.
    View in: PubMed
    Score: 0.015
  118. Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage. EMBO J. 2006 Jul 26; 25(14):3389-97.
    View in: PubMed
    Score: 0.015
  119. Understanding GFP posttranslational chemistry: structures of designed variants that achieve backbone fragmentation, hydrolysis, and decarboxylation. J Am Chem Soc. 2006 Apr 12; 128(14):4685-93.
    View in: PubMed
    Score: 0.015
  120. Structural evidence for an enolate intermediate in GFP fluorophore biosynthesis. J Am Chem Soc. 2006 Mar 15; 128(10):3166-8.
    View in: PubMed
    Score: 0.015
  121. A novel processive mechanism for DNA synthesis revealed by structure, modeling and mutagenesis of the accessory subunit of human mitochondrial DNA polymerase. J Mol Biol. 2006 May 19; 358(5):1229-43.
    View in: PubMed
    Score: 0.015
  122. Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis. Biochemistry. 2005 Dec 13; 44(49):16211-20.
    View in: PubMed
    Score: 0.014
  123. Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome. Mol Cell. 2005 Oct 28; 20(2):187-98.
    View in: PubMed
    Score: 0.014
  124. Biochemical characterization and crystal structure of a Dim1 family associated protein: Dim2. Biochemistry. 2005 Sep 13; 44(36):11997-2008.
    View in: PubMed
    Score: 0.014
  125. Crystallographic structures of Discosoma red fluorescent protein with immature and mature chromophores: linking peptide bond trans-cis isomerization and acylimine formation in chromophore maturation. Biochemistry. 2005 Jul 26; 44(29):9833-40.
    View in: PubMed
    Score: 0.014
  126. Understanding GFP chromophore biosynthesis: controlling backbone cyclization and modifying post-translational chemistry. Biochemistry. 2005 Feb 15; 44(6):1960-70.
    View in: PubMed
    Score: 0.013
  127. Synthesis of oligonucleotides containing 2'-fluorinated thymidine glycol as mechanism-based inhibitors of endonuclease III. Nucleic Acids Symp Ser (Oxf). 2005; (49):195-6.
    View in: PubMed
    Score: 0.013
  128. Reaction intermediates in the catalytic mechanism of Escherichia coli MutY DNA glycosylase. J Biol Chem. 2004 Nov 05; 279(45):46930-9.
    View in: PubMed
    Score: 0.013
  129. Nickel superoxide dismutase structure and mechanism. Biochemistry. 2004 Jun 29; 43(25):8038-47.
    View in: PubMed
    Score: 0.013
  130. Role of hydrogen bonding in the active site of human manganese superoxide dismutase. Biochemistry. 2004 Jun 08; 43(22):7038-45.
    View in: PubMed
    Score: 0.013
  131. 2-aminopyridines as highly selective inducible nitric oxide synthase inhibitors. Differential binding modes dependent on nitrogen substitution. J Med Chem. 2004 Jun 03; 47(12):3320-3.
    View in: PubMed
    Score: 0.013
  132. The rad50 signature motif: essential to ATP binding and biological function. J Mol Biol. 2004 Jan 23; 335(4):937-51.
    View in: PubMed
    Score: 0.013
  133. Amino acid substitution at the dimeric interface of human manganese superoxide dismutase. J Biol Chem. 2004 Feb 13; 279(7):5861-6.
    View in: PubMed
    Score: 0.012
  134. Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proc Natl Acad Sci U S A. 2003 Oct 14; 100(21):12111-6.
    View in: PubMed
    Score: 0.012
  135. Catalytic and structural effects of amino acid substitution at histidine 30 in human manganese superoxide dismutase: insertion of valine C gamma into the substrate access channel. Biochemistry. 2003 Mar 18; 42(10):2781-9.
    View in: PubMed
    Score: 0.012
  136. Structural basis for endothelial nitric oxide synthase binding to calmodulin. EMBO J. 2003 Feb 17; 22(4):766-75.
    View in: PubMed
    Score: 0.012
  137. Identification of a new cryptochrome class. Structure, function, and evolution. Mol Cell. 2003 Jan; 11(1):59-67.
    View in: PubMed
    Score: 0.012
  138. Conformational changes in nitric oxide synthases induced by chlorzoxazone and nitroindazoles: crystallographic and computational analyses of inhibitor potency. Biochemistry. 2002 Nov 26; 41(47):13915-25.
    View in: PubMed
    Score: 0.012
  139. Structures of tetrahydrobiopterin binding-site mutants of inducible nitric oxide synthase oxygenase dimer and implicated roles of Trp457. Biochemistry. 2001 Oct 30; 40(43):12826-32.
    View in: PubMed
    Score: 0.011
  140. Kinetic analysis of product inhibition in human manganese superoxide dismutase. Biochemistry. 2001 Oct 09; 40(40):12051-8.
    View in: PubMed
    Score: 0.011
  141. Multiple replacements of glutamine 143 in human manganese superoxide dismutase: effects on structure, stability, and catalysis. Biochemistry. 2000 Jun 20; 39(24):7131-7.
    View in: PubMed
    Score: 0.010
  142. N-terminal domain swapping and metal ion binding in nitric oxide synthase dimerization. EMBO J. 1999 Nov 15; 18(22):6271-81.
    View in: PubMed
    Score: 0.009
  143. Interrupting the hydrogen bond network at the active site of human manganese superoxide dismutase. J Biol Chem. 1999 Sep 24; 274(39):27711-6.
    View in: PubMed
    Score: 0.009
  144. Role of tryptophan 161 in catalysis by human manganese superoxide dismutase. Biochemistry. 1999 Sep 07; 38(36):11686-92.
    View in: PubMed
    Score: 0.009
  145. Human glutathione transferase A4-4 crystal structures and mutagenesis reveal the basis of high catalytic efficiency with toxic lipid peroxidation products. J Mol Biol. 1999 May 07; 288(3):427-39.
    View in: PubMed
    Score: 0.009
  146. The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J. 1997 Nov 03; 16(21):6548-58.
    View in: PubMed
    Score: 0.008
  147. Exon 5 encoded domain is not required for the toxic function of mutant SOD1 but essential for the dismutase activity: identification and characterization of two new SOD1 mutations associated with familial amyotrophic lateral sclerosis. Neurogenetics. 1997 May; 1(1):65-71.
    View in: PubMed
    Score: 0.008
  148. Novel dimeric interface and electrostatic recognition in bacterial Cu,Zn superoxide dismutase. Proc Natl Acad Sci U S A. 1996 Nov 12; 93(23):12774-9.
    View in: PubMed
    Score: 0.008
  149. Atomic and residue hydrophilicity in the context of folded protein structures. Proteins. 1995 Dec; 23(4):536-47.
    View in: PubMed
    Score: 0.007
  150. Identification of critical active-site residues in the multifunctional human DNA repair enzyme HAP1. Nat Struct Biol. 1995 Jul; 2(7):561-8.
    View in: PubMed
    Score: 0.007
  151. The D90A mutation results in a polymorphism of Cu,Zn superoxide dismutase that is prevalent in northern Sweden and Finland. Hum Mol Genet. 1995 Jun; 4(6):1105-8.
    View in: PubMed
    Score: 0.007
  152. Two novel SOD1 mutations in patients with familial amyotrophic lateral sclerosis. Hum Mol Genet. 1995 Jun; 4(6):1113-6.
    View in: PubMed
    Score: 0.007
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.