JOHN TAINER to X-Ray Diffraction
This is a "connection" page, showing publications JOHN TAINER has written about X-Ray Diffraction.
Connection Strength
7.117
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Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology. Curr Opin Struct Biol. 2019 10; 58:197-213.
Score: 0.640
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Modeling macromolecular motions by x-ray-scattering-constrained molecular dynamics. Biophys J. 2015 May 19; 108(10):2421-2423.
Score: 0.483
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DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals. Proc Natl Acad Sci U S A. 2013 Oct 22; 110(43):17308-13.
Score: 0.432
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Comprehensive macromolecular conformations mapped by quantitative SAXS analyses. Nat Methods. 2013 Jun; 10(6):453-4.
Score: 0.421
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Super-resolution in solution X-ray scattering and its applications to structural systems biology. Annu Rev Biophys. 2013; 42:415-41.
Score: 0.415
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Developing advanced X-ray scattering methods combined with crystallography and computation. Methods. 2013 Mar; 59(3):363-71.
Score: 0.412
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Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers. 2011 Aug; 95(8):559-71.
Score: 0.364
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Improving small-angle X-ray scattering data for structural analyses of the RNA world. RNA. 2010 Mar; 16(3):638-46.
Score: 0.334
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Bridging the solution divide: comprehensive structural analyses of dynamic RNA, DNA, and protein assemblies by small-angle X-ray scattering. Curr Opin Struct Biol. 2010 Feb; 20(1):128-37.
Score: 0.334
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Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS). Nat Methods. 2009 Aug; 6(8):606-12.
Score: 0.322
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Structural analysis of flexible proteins in solution by small angle X-ray scattering combined with crystallography. J Struct Biol. 2007 May; 158(2):214-23.
Score: 0.267
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Chemical screening by time-resolved X-ray scattering to discover allosteric probes. Nat Chem Biol. 2024 Sep; 20(9):1199-1209.
Score: 0.224
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Applying HT-SAXS to chemical ligand screening. Methods Enzymol. 2023; 678:331-350.
Score: 0.203
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Visualizing functional dynamicity in the DNA-dependent protein kinase holoenzyme DNA-PK complex by integrating SAXS with cryo-EM. Prog Biophys Mol Biol. 2021 08; 163:74-86.
Score: 0.175
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2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update. Acta Crystallogr D Struct Biol. 2017 Sep 01; 73(Pt 9):710-728.
Score: 0.141
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High Resolution Distance Distributions Determined by X-Ray and Neutron Scattering. Adv Exp Med Biol. 2017; 1009:167-181.
Score: 0.135
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An Intrinsically Disordered APLF Links Ku, DNA-PKcs, and XRCC4-DNA Ligase IV in an Extended Flexible Non-homologous End Joining Complex. J Biol Chem. 2016 12 30; 291(53):26987-27006.
Score: 0.134
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Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor. Structure. 2016 12 06; 24(12):2067-2079.
Score: 0.134
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FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles. Nucleic Acids Res. 2016 Jul 08; 44(W1):W424-9.
Score: 0.129
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High-throughput SAXS for the characterization of biomolecules in solution: a practical approach. Methods Mol Biol. 2014; 1091:245-58.
Score: 0.110
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Methods for using new conceptual tools and parameters to assess RNA structure by small-angle X-ray scattering. Methods Enzymol. 2014; 549:235-63.
Score: 0.110
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Accurate SAXS profile computation and its assessment by contrast variation experiments. Biophys J. 2013 Aug 20; 105(4):962-74.
Score: 0.107
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Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell. 2008 Oct 03; 135(1):97-109.
Score: 0.076
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Combining small angle X-ray scattering (SAXS) with protein structure predictions to characterize conformations in solution. Methods Enzymol. 2023; 678:351-376.
Score: 0.051
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Universally Accessible Structural Data on Macromolecular Conformation, Assembly, and Dynamics by Small Angle X-Ray Scattering for DNA Repair Insights. Methods Mol Biol. 2022; 2444:43-68.
Score: 0.048
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Monitoring Nuclease Activity by X-Ray Scattering Interferometry Using Gold Nanoparticle-Conjugated DNA. Methods Mol Biol. 2022; 2444:183-205.
Score: 0.048
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Heparin-mediated dimerization of follistatin. Exp Biol Med (Maywood). 2021 02; 246(4):467-482.
Score: 0.044
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Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences. Proteins. 2019 12; 87(12):1298-1314.
Score: 0.041
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Flexible Tethering of ASPP Proteins Facilitates PP-1c Catalysis. Structure. 2019 10 01; 27(10):1485-1496.e4.
Score: 0.040
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Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy. Proteins. 2018 03; 86 Suppl 1:202-214.
Score: 0.036
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Pro-metastatic collagen lysyl hydroxylase dimer assemblies stabilized by Fe2+-binding. Nat Commun. 2018 02 06; 9(1):512.
Score: 0.036
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Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex. Nucleic Acids Res. 2017 Jun 02; 45(10):6238-6251.
Score: 0.035
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Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome. Structure. 2017 01 03; 25(1):157-166.
Score: 0.034
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HU multimerization shift controls nucleoid compaction. Sci Adv. 2016 07; 2(7):e1600650.
Score: 0.033
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Crystallization and preliminary crystallographic study of human CksHs1: a cell cycle regulatory protein. Proteins. 1995 Jan; 21(1):70-3.
Score: 0.029
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A structure-specific nucleic acid-binding domain conserved among DNA repair proteins. Proc Natl Acad Sci U S A. 2014 May 27; 111(21):7618-23.
Score: 0.028
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ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. EMBO J. 2014 Mar 03; 33(5):482-500.
Score: 0.028
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ModBase, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 2014 Jan; 42(Database issue):D336-46.
Score: 0.027
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Structural insights into the interaction of IL-33 with its receptors. Proc Natl Acad Sci U S A. 2013 Sep 10; 110(37):14918-23.
Score: 0.027
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A new structural framework for integrating replication protein A into DNA processing machinery. Nucleic Acids Res. 2013 Feb 01; 41(4):2313-27.
Score: 0.026
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Purification, crystallization and space group determination of DNA repair enzyme exonuclease III from E. coli. J Mol Biol. 1993 Jan 05; 229(1):239-42.
Score: 0.026
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The interdependence of protein surface topography and bound water molecules revealed by surface accessibility and fractal density measures. J Mol Biol. 1992 Nov 05; 228(1):13-22.
Score: 0.025
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Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III. Science. 1992 Oct 16; 258(5081):434-40.
Score: 0.025
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The structure of human mitochondrial manganese superoxide dismutase reveals a novel tetrameric interface of two 4-helix bundles. Cell. 1992 Oct 02; 71(1):107-18.
Score: 0.025
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Atomic structures of wild-type and thermostable mutant recombinant human Cu,Zn superoxide dismutase. Proc Natl Acad Sci U S A. 1992 Jul 01; 89(13):6109-13.
Score: 0.025
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Mechanism and atomic structure of superoxide dismutase. Free Radic Res Commun. 1991; 12-13 Pt 1:269-78.
Score: 0.022
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The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. J Mol Biol. 2011 Jan 28; 405(4):939-55.
Score: 0.022
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Changes in crystallographic structure and thermostability of a Cu,Zn superoxide dismutase mutant resulting from the removal of a buried cysteine. J Biol Chem. 1990 Aug 25; 265(24):14234-41.
Score: 0.022
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Crystallographic characterization of a Cu,Zn superoxide dismutase from Photobacterium leiognathi. J Mol Biol. 1990 Apr 05; 212(3):449-51.
Score: 0.021
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Biochemical purification and crystallographic characterization of the fiber-forming protein pilin from Neisseria gonorrhoeae. J Biol Chem. 1990 Feb 05; 265(4):2278-85.
Score: 0.021
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The BARD1 C-terminal domain structure and interactions with polyadenylation factor CstF-50. Biochemistry. 2008 Nov 04; 47(44):11446-56.
Score: 0.019
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Understanding the structure and antigenicity of gonococcal pili. Rev Infect Dis. 1988 Jul-Aug; 10 Suppl 2:S296-9.
Score: 0.019
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Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1. J Mol Biol. 2008 Jul 25; 380(5):828-43.
Score: 0.019
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Probing enzyme-substrate recognition and catalytic mechanism in Cu,Zn superoxide dismutase. Basic Life Sci. 1988; 49:635-40.
Score: 0.018
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Three dimensional structure of bacterial pili. Antonie Van Leeuwenhoek. 1987; 53(6):447-53.
Score: 0.017
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A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA. Mol Cell. 2006 Oct 20; 24(2):279-91.
Score: 0.017
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The reactivity of anti-peptide antibodies is a function of the atomic mobility of sites in a protein. Nature. 1984 Nov 8-14; 312(5990):127-34.
Score: 0.015
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Structural basis for isozyme-specific regulation of electron transfer in nitric-oxide synthase. J Biol Chem. 2004 Sep 03; 279(36):37918-27.
Score: 0.014
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Amino acid substitution at the dimeric interface of human manganese superoxide dismutase. J Biol Chem. 2004 Feb 13; 279(7):5861-6.
Score: 0.014
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Amyotrophic lateral sclerosis and structural defects in Cu,Zn superoxide dismutase. Science. 1993 Aug 20; 261(5124):1047-51.
Score: 0.007
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Probing the structural basis for enzyme-substrate recognition in Cu,Zn superoxide dismutase. Free Radic Res Commun. 1991; 12-13 Pt 1:287-96.
Score: 0.006
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Crystallographic structure of a photoreceptor protein at 2.4 A resolution. Proc Natl Acad Sci U S A. 1989 Sep; 86(17):6533-7.
Score: 0.005
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Evolution of CuZn superoxide dismutase and the Greek key beta-barrel structural motif. Proteins. 1989; 5(4):322-36.
Score: 0.005