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Md. Abul Hassan Samee

TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular Physiology & Biophysics
DivisionMolecular Physiology & Biophysics
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Samee MAH, Bruneau BG, Pollard KS. A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs. Cell Syst. 2019 01 23; 8(1):27-42.e6. PMID: 30660610.
      View in: PubMed
    2. Samee MAH, Lydiard-Martin T, Biette KM, Vincent BJ, Bragdon MD, Eckenrode KB, Wunderlich Z, Estrada J, Sinha S, DePace AH. Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA. Cell Rep. 2017 Oct 03; 21(1):236-245. PMID: 28978476.
      View in: PubMed
    3. Luna-Zurita L, Stirnimann CU, Glatt S, Kaynak BL, Thomas S, Baudin F, Samee MA, He D, Small EM, Mileikovsky M, Nagy A, Holloway AK, Pollard KS, Müller CW, Bruneau BG. Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis. Cell. 2016 Feb 25; 164(5):999-1014. PMID: 26875865.
      View in: PubMed
    4. Samee MA, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Syst. 2015 Dec 23; 1(6):396-407. PMID: 27136354.
      View in: PubMed
    5. Kazemian M, Suryamohan K, Chen JY, Zhang Y, Samee MA, Halfon MS, Sinha S. Evidence for deep regulatory similarities in early developmental programs across highly diverged insects. Genome Biol Evol. 2014 Sep; 6(9):2301-20. PMID: 25173756.
      View in: PubMed
    6. Samee MA, Sinha S. Quantitative modeling of a gene's expression from its intergenic sequence. PLoS Comput Biol. 2014 Mar; 10(3):e1003467. PMID: 24604095.
      View in: PubMed
    7. Duque T, Samee MA, Kazemian M, Pham HN, Brodsky MH, Sinha S. Simulations of enhancer evolution provide mechanistic insights into gene regulation. Mol Biol Evol. 2014 Jan; 31(1):184-200. PMID: 24097306.
      View in: PubMed
    8. Suleimenov Y, Ay A, Samee MA, Dresch JM, Sinha S, Arnosti DN. Global parameter estimation for thermodynamic models of transcriptional regulation. Methods. 2013 Jul 15; 62(1):99-108. PMID: 23726942.
      View in: PubMed
    9. He X, Samee MA, Blatti C, Sinha S. Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression. PLoS Comput Biol. 2010 Sep 16; 6(9). PMID: 20862354.
      View in: PubMed
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