TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Integrative Physiology
AddressOne Baylor Plaza
Houston, TX 77030
vCardDownload vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Subasinghe SAAS, Pautler RG, Samee MAH, Yustein JT, Allen MJ. Dual-Mode Tumor Imaging Using Probes That Are Responsive to Hypoxia-Induced Pathological Conditions. Biosensors (Basel). 2022 Jun 30; 12(7). PMID: 35884281.
      Citations:    Fields:    Translation:Humans
    2. Steimle JD, Grisanti Canozo FJ, Park M, Kadow ZA, Samee MAH, Martin JF. Decoding the PITX2-controlled genetic network in atrial fibrillation. JCI Insight. 2022 06 08; 7(11). PMID: 35471998.
      Citations:    Fields:    Translation:Humans
    3. Samee MAH. Approaching deconvolution with Fermi's mindset. Cell Syst. 2022 05 18; 13(5):351-352. PMID: 35588698.
      Citations:    Fields:    Translation:Cells
    4. Grisanti Canozo FJ, Zuo Z, Martin JF, Samee MAH. Cell-type modeling in spatial transcriptomics data elucidates spatially variable colocalization and communication between cell-types in mouse brain. Cell Syst. 2022 01 19; 13(1):58-70.e5. PMID: 34626538.
      Citations: 1     Fields:    Translation:AnimalsCells
    5. Chumpitaz-Diaz L, Samee MAH, Pollard KS. Systematic identification of non-canonical transcription factor motifs. BMC Mol Cell Biol. 2021 Aug 31; 22(1):44. PMID: 34465294.
      Citations:    Fields:    Translation:HumansCells
    6. Samee MAH, Bruneau BG, Pollard KS. A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence Motifs. Cell Syst. 2019 01 23; 8(1):27-42.e6. PMID: 30660610.
      Citations: 20     Fields:    Translation:HumansCells
    7. Samee MAH, Lydiard-Martin T, Biette KM, Vincent BJ, Bragdon MD, Eckenrode KB, Wunderlich Z, Estrada J, Sinha S, DePace AH. Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA. Cell Rep. 2017 Oct 03; 21(1):236-245. PMID: 28978476.
      Citations: 7     Fields:    Translation:AnimalsCells
    8. Luna-Zurita L, Stirnimann CU, Glatt S, Kaynak BL, Thomas S, Baudin F, Samee MA, He D, Small EM, Mileikovsky M, Nagy A, Holloway AK, Pollard KS, Müller CW, Bruneau BG. Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis. Cell. 2016 Feb 25; 164(5):999-1014. PMID: 26875865.
      Citations: 85     Fields:    Translation:AnimalsCells
    9. Samee MA, Lim B, Samper N, Lu H, Rushlow CA, Jiménez G, Shvartsman SY, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Syst. 2015 Dec 23; 1(6):396-407. PMID: 27136354.
      Citations: 18     Fields:    
    10. Kazemian M, Suryamohan K, Chen JY, Zhang Y, Samee MA, Halfon MS, Sinha S. Evidence for deep regulatory similarities in early developmental programs across highly diverged insects. Genome Biol Evol. 2014 Sep; 6(9):2301-20. PMID: 25173756.
      Citations: 21     Fields:    Translation:AnimalsCells
    11. Samee MA, Sinha S. Quantitative modeling of a gene's expression from its intergenic sequence. PLoS Comput Biol. 2014 Mar; 10(3):e1003467. PMID: 24604095.
      Citations: 18     Fields:    Translation:AnimalsCells
    12. Duque T, Samee MA, Kazemian M, Pham HN, Brodsky MH, Sinha S. Simulations of enhancer evolution provide mechanistic insights into gene regulation. Mol Biol Evol. 2014 Jan; 31(1):184-200. PMID: 24097306.
      Citations: 15     Fields:    Translation:AnimalsCells
    13. Suleimenov Y, Ay A, Samee MA, Dresch JM, Sinha S, Arnosti DN. Global parameter estimation for thermodynamic models of transcriptional regulation. Methods. 2013 Jul 15; 62(1):99-108. PMID: 23726942.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    14. He X, Samee MA, Blatti C, Sinha S. Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression. PLoS Comput Biol. 2010 Sep 16; 6(9). PMID: 20862354.
      Citations: 88     Fields:    Translation:AnimalsCells
    SAMEE's Networks
    Click the
    buttons for more information and interactive visualizations!
    Concepts (72)
    Co-Authors (5)
    Similar People (60)
    Same Department Expand Description