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Xuesen Cheng

TitlePostdoc Fellows and Associates
InstitutionBaylor College of Medicine
DepartmentPostDoc
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Tian A, Kim S, Baidouri H, Li J, Cheng X, Vranka J, Li Y, Chen R, Raghunathan V. Divergence in cellular markers observed in single-cell transcriptomics datasets between cultured primary trabecular meshwork cells and tissues. Sci Data. 2025 Feb 14; 12(1):264. PMID: 39952952; PMCID: PMC11829053.
      Citations:    Fields:    
    2. Guo S, Liu X, Cheng X, Jiang Y, Ji S, Liang Q, Koval A, Li Y, Owen LA, Kim IK, Aparicio A, Lee S, Sood AK, Kopetz S, Shen JP, Weinstein JN, DeAngelis MM, Chen R, Wang W, Guo S, Liu X, Cheng X, Jiang Y, Ji S, Liang Q, Koval A, Li Y, Owen LA, Kim IK, Aparicio A, Lee S, Sood AK, Kopetz S, Shen JP, Weinstein JN, DeAngelis MM, Chen R, Wang W. A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples. Genome Res. 2025 Jan 22; 35(1):147-161. PMID: 39586714; PMCID: PMC11789644.
      Citations:    Fields:    
    3. Zuo Z, Cheng X, Ferdous S, Shao J, Li J, Bao Y, Li J, Lu J, Jacobo Lopez A, Wohlschlegel J, Prieve A, Thomas MG, Reh TA, Li Y, Moshiri A, Chen R. Single cell dual-omic atlas of the human developing retina. Nat Commun. 2024 Aug 09; 15(1):6792. PMID: 39117640; PMCID: PMC11310509.
      Citations: 1     Fields:    Translation:HumansCells
    4. Li J, Choi J, Cheng X, Ma J, Pema S, Sanes JR, Mardon G, Frankfort BJ, Tran NM, Li Y, Chen R. Comprehensive single-cell atlas of the mouse retina. iScience. 2024 Jun 21; 27(6):109916. PMID: 38812536; PMCID: PMC11134544.
      Citations: 8     
    5. Tian A, Baidouri H, Kim S, Li J, Cheng X, Li Y, Chen R, Raghunathan V. To be or not to be - Decoding the Trabecular Meshwork Cell Identity. bioRxiv. 2024 Apr 29. PMID: 38746421; PMCID: PMC11092480.
      Citations:    
    6. Li J, Choi J, Cheng X, Ma J, Pema S, Sanes JR, Mardon G, Frankfort BJ, Tran NM, Li Y, Chen R. Comprehensive single-cell atlas of the mouse retina. bioRxiv. 2024 Jan 28. PMID: 38328114; PMCID: PMC10849744.
      Citations:    
    7. Wang J, Cheng X, Liang Q, Owen LA, Lu J, Zheng Y, Wang M, Chen S, DeAngelis MM, Li Y, Chen R. Single-cell multiomics of the human retina reveals hierarchical transcription factor collaboration in mediating cell type-specific effects of genetic variants on gene regulation. Genome Biol. 2023 11 27; 24(1):269. PMID: 38012720; PMCID: PMC10680294.
      Citations:    Fields:    Translation:HumansCells
    8. Li J, Wang J, Ibarra IL, Cheng X, Luecken MD, Lu J, Monavarfeshani A, Yan W, Zheng Y, Zuo Z, Colborn SLZ, Cortez BS, Owen LA, Tran NM, Shekhar K, Sanes JR, Stout JT, Chen S, Li Y, DeAngelis MM, Theis FJ, Chen R. Integrated multi-omics single cell atlas of the human retina. Res Sq. 2023 Nov 17. PMID: 38014002; PMCID: PMC10680922.
      Citations:    
    9. Guo S, Liu X, Cheng X, Jiang Y, Ji S, Liang Q, Koval A, Li Y, Owen LA, Kim IK, Aparicio A, Shen JP, Kopetz S, Weinstein JN, DeAngelis MM, Chen R, Wang W. DeMixSC: a deconvolution framework that uses single-cell sequencing plus a small benchmark dataset for improved analysis of cell-type ratios in complex tissue samples. bioRxiv. 2023 Nov 11. PMID: 37873318; PMCID: PMC10592762.
      Citations:    
    10. Dou J, Tan Y, Kock KH, Wang J, Cheng X, Tan LM, Han KY, Hon CC, Park WY, Shin JW, Jin H, Wang Y, Chen H, Ding L, Prabhakar S, Navin N, Chen R, Chen K. Single-nucleotide variant calling in single-cell sequencing data with Monopogen. Nat Biotechnol. 2024 May; 42(5):803-812. PMID: 37592035; PMCID: PMC11098741.
      Citations: 3     Fields:    
    11. Liang Q, Cheng X, Wang J, Owen L, Shakoor A, Lillvis JL, Zhang C, Farkas M, Kim IK, Li Y, DeAngelis M, Chen R. A multi-omics atlas of the human retina at single-cell resolution. Cell Genom. 2023 Jun 14; 3(6):100298. PMID: 37388908; PMCID: PMC10300490.
      Citations: 10     
    12. Dou J, Liang S, Mohanty V, Miao Q, Huang Y, Liang Q, Cheng X, Kim S, Choi J, Li Y, Li L, Daher M, Basar R, Rezvani K, Chen R, Chen K. Bi-order multimodal integration of single-cell data. Genome Biol. 2022 05 09; 23(1):112. PMID: 35534898; PMCID: PMC9082907.
      Citations:    Fields:    
    13. Bertrand RE, Wang J, Li Y, Cheng X, Wang K, Stoilov P, Chen R. Cwc27, associated with retinal degeneration, functions as a splicing factor in vivo. Hum Mol Genet. 2022 04 22; 31(8):1278-1292. PMID: 34726245; PMCID: PMC9029344.
      Citations: 1     Fields:    Translation:AnimalsCells
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