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ANDREAS TOLIAS

TitleProfessor
InstitutionBaylor College of Medicine
DepartmentDepartment of Neuroscience
AddressOne Baylor Plaza
Houston, TX 77030
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    Collapse Research 
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    U01NS113294     (ST-PIERRE, FRANCOIS)Aug 15, 2019 - Jul 31, 2022
    NIH
    Designing and deploying an expanded color palette of voltage indicators engineered for multiphoton microscopy
    Role: Co-Principal Investigator
    U19MH114830     (ZENG, HONGKUI)Sep 20, 2017 - Jun 30, 2022
    NIH
    A comprehensive whole-brain atlas of cell types in the mouse
    Role: Co-Principal Investigator
    R01MH109556     (TOLIAS, ANDREAS)Sep 1, 2017 - Jun 30, 2022
    NIH
    Deciphering the building blocks of hippocampal circuits
    Role: Principal Investigator
    R01EY026927     (TOLIAS, ANDREAS)Apr 1, 2017 - Mar 31, 2022
    NIH
    Probabilistic coding in cortical populations
    Role: Principal Investigator
    U01NS090596     (ROUKES, MICHAEL L)Sep 30, 2014 - Jul 31, 2018
    NIH
    Modular nanophotonic probes for dense neural recording at single-cell resolution
    Role: Co-Principal Investigator
    R01MH103108     (TOLIAS, ANDREAS)Sep 26, 2013 - Jul 31, 2018
    NIH
    A MOLECULAR CODE FOR CONNECTIVITY IN THE NEOCORTEX
    Role: Principal Investigator
    R21EB016223     (TOLIAS, ANDREAS)Jul 1, 2013 - Jun 30, 2015
    NIH
    ALL-OPTICAL HIGH-THROUGHPUT FUNCTIONAL CONNECTIVITY MAPPING USING ADVANCED MICROS
    Role: Principal Investigator
    DP1EY023176     (TOLIAS, ANDREAS)Sep 30, 2011 - Jul 31, 2017
    NIH
    Dissecting the Fabric of the Cerebral Cortex
    Role: Principal Investigator
    DP1OD008301     (TOLIAS, ANDREAS SAVAS)Sep 30, 2011 - Jul 31, 2012
    NIH
    Dissecting the Fabric of the Cerebral Cortex
    Role: Principal Investigator
    R01DA028525     (SAGGAU, PETER)Aug 15, 2009 - Jul 31, 2012
    NIH
    Optogenetic Tools for in vivo Analysis of Cortical Circuit Plasticity
    Role: Co-Principal Investigator
    R01EY018847     (TOLIAS, ANDREAS)Sep 1, 2008 - Aug 31, 2014
    NIH
    Mechanisms of Perceptual Learning in Primary Visual Cortex
    Role: Principal Investigator
    F32EY007088     (TOLIAS, ANDREAS SAVAS)Jan 1, 2001
    NIH
    FMRI STUDIES;VISUAL EXPERIENCE AND NEURONAL CHANGES
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Wang EY, Fahey PG, Ponder K, Ding Z, Chang A, Muhammad T, Patel S, Ding Z, Tran DT, Fu J, Papadopoulos S, Franke K, Ecker AS, Reimer J, Pitkow X, Sinz FH, Tolias AS. Towards a Foundation Model of the Mouse Visual Cortex. bioRxiv. 2023 Apr 21. PMID: 36993435; PMCID: PMC10055288.
      Citations:    
    2. Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Muhammad T, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Froudarakis E, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS. Functional connectomics reveals general wiring rule in mouse visual cortex. bioRxiv. 2023 Mar 30. PMID: 36993398; PMCID: PMC10054929.
      Citations:    
    3. Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. NEURD: automated proofreading and feature extraction for connectomics. bioRxiv. 2023 Mar 29. PMID: 36993282; PMCID: PMC10055177.
      Citations:    
    4. Li Z, Ortega Caro J, Rusak E, Brendel W, Bethge M, Anselmi F, Patel AB, Tolias AS, Pitkow X. Robust deep learning object recognition models rely on low frequency information in natural images. PLoS Comput Biol. 2023 03; 19(3):e1010932. PMID: 36972288; PMCID: PMC10079058.
      Citations:    Fields:    Translation:Humans
    5. Zador A, Escola S, Richards B, ?lveczky B, Bengio Y, Boahen K, Botvinick M, Chklovskii D, Churchland A, Clopath C, DiCarlo J, Ganguli S, Hawkins J, K?rding K, Koulakov A, LeCun Y, Lillicrap T, Marblestone A, Olshausen B, Pouget A, Savin C, Sejnowski T, Simoncelli E, Solla S, Sussillo D, Tolias AS, Tsao D. Catalyzing next-generation Artificial Intelligence through NeuroAI. Nat Commun. 2023 03 22; 14(1):1597. PMID: 36949048; PMCID: PMC10033876.
      Citations:    Fields:    Translation:HumansAnimals
    6. Ding Z, Tran DT, Ponder K, Cobos E, Ding Z, Fahey PG, Wang E, Muhammad T, Fu J, Cadena SA, Papadopoulos S, Patel S, Franke K, Reimer J, Sinz FH, Ecker AS, Pitkow X, Tolias AS. Bipartite invariance in mouse primary visual cortex. bioRxiv. 2023 Mar 16. PMID: 36993218; PMCID: PMC10055119.
      Citations:    
    7. Fu J, Shrinivasan S, Ponder K, Muhammad T, Ding Z, Wang E, Ding Z, Tran DT, Fahey PG, Papadopoulos S, Patel S, Reimer J, Ecker AS, Pitkow X, Haefner RM, Sinz FH, Franke K, Tolias AS. Pattern completion and disruption characterize contextual modulation in mouse visual cortex. bioRxiv. 2023 Mar 14. PMID: 36993321; PMCID: PMC10054952.
      Citations:    
    8. Schneider-Mizell CM, Bodor A, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, Bae JA, Castro MA, Fahey PG, Froudakis E, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Papadopoulos S, Patel S, Pitkow X, Popovych S, Silversmith W, Sinz FH, Turner NL, Wong W, Wu J, Yu SC, MICrONS Consortium, Reimer J, Seung HS, Reid RC, Collman F, da Costa NM, Tolias AS. Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex. bioRxiv. 2023 Feb 14. PMID: 36747710; PMCID: PMC9900837.
      Citations:    
    9. Xiao J, Provenza NR, Asfouri J, Myers J, Mathura RK, Metzger B, Adkinson JA, Allawala AB, Pirtle V, Oswalt D, Shofty B, Robinson ME, Mathew SJ, Goodman WK, Pouratian N, Schrater PR, Patel AB, Tolias AS, Bijanki KR, Pitkow X, Sheth SA. Decoding Depression Severity From Intracranial Neural Activity. Biol Psychiatry. 2023 Feb 02. PMID: 36736418.
      Citations: 1     Fields:    
    10. van de Ven GM, Tuytelaars T, Tolias AS. Three types of incremental learning. Nat Mach Intell. 2022; 4(12):1185-1197. PMID: 36567959; PMCID: PMC9771807.
      Citations:    
    11. Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Wong W, Castro M, Jordan CS, Wilson AM, Froudarakis E, Buchanan J, Takeno MM, Torres R, Mahalingam G, Collman F, Schneider-Mizell CM, Bumbarger DJ, Li Y, Becker L, Suckow S, Reimer J, Tolias AS, Macarico da Costa N, Reid RC, Seung HS. Binary and analog variation of synapses between cortical pyramidal neurons. Elife. 2022 11 16; 11. PMID: 36382887; PMCID: PMC9704804.
      Citations:    
    12. Shen S, Jiang X, Scala F, Fu J, Fahey P, Kobak D, Tan Z, Zhou N, Reimer J, Sinz F, Tolias AS. Distinct organization of two cortico-cortical feedback pathways. Nat Commun. 2022 10 27; 13(1):6389. PMID: 36302912; PMCID: PMC9613627.
      Citations:    
    13. Franke K, Willeke KF, Ponder K, Galdamez M, Zhou N, Muhammad T, Patel S, Froudarakis E, Reimer J, Sinz FH, Tolias AS. State-dependent pupil dilation rapidly shifts visual feature selectivity. Nature. 2022 10; 610(7930):128-134. PMID: 36171291.
      Citations:    
    14. Liu Z, Lu X, Villette V, Gou Y, Colbert KL, Lai S, Guan S, Land MA, Lee J, Assefa T, Zollinger DR, Korympidou MM, Vlasits AL, Pang MM, Su S, Cai C, Froudarakis E, Zhou N, Patel SS, Smith CL, Ayon A, Bizouard P, Bradley J, Franke K, Clandinin TR, Giovannucci A, Tolias AS, Reimer J, Dieudonn? S, St-Pierre F. Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy. Cell. 2022 Sep 01; 185(18):3408-3425.e29. PMID: 35985322; PMCID: PMC9563101.
      Citations:    
    15. Ash RT, Palagina G, Fernandez-Leon JA, Park J, Seilheimer R, Lee S, Sabharwal J, Reyes F, Wang J, Lu D, Sarfraz M, Froudarakis E, Tolias AS, Wu SM, Smirnakis SM. Increased Reliability of Visually-Evoked Activity in Area V1 of the MECP2-Duplication Mouse Model of Autism. J Neurosci. 2022 08 17; 42(33):6469-6482. PMID: 35831173; PMCID: PMC9398540.
      Citations:    Fields:    
    16. Karantzas N, Besier E, Ortega Caro J, Pitkow X, Tolias AS, Patel AB, Anselmi F. Understanding Robustness and Generalization of Artificial Neural Networks Through Fourier Masks. Front Artif Intell. 2022; 5:890016. PMID: 35903397; PMCID: PMC9314860.
      Citations:    
    17. Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, Seung HS, da Costa NM. Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity. Cell. 2022 03 17; 185(6):1082-1100.e24. PMID: 35216674; PMCID: PMC9337909.
      Citations:    Fields:    Translation:AnimalsCells
    18. Lusk SJ, McKinney A, Hunt PJ, Fahey PG, Patel J, Chang A, Sun JJ, Martinez VK, Zhu PJ, Egbert JR, Allen G, Jiang X, Arenkiel BR, Tolias AS, Costa-Mattioli M, Ray RS. A CRISPR toolbox for generating intersectional genetic mouse models for functional, molecular, and anatomical circuit mapping. BMC Biol. 2022 01 28; 20(1):28. PMID: 35086530; PMCID: PMC8796356.
      Citations: 1     Fields:    Translation:AnimalsCells
    19. Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert A, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Zhuang J, Nandi A, Hu B, Buchanan J, Takeno MM, Torres R, Mahalingam G, Bumbarger DJ, Li Y, Chartrand T, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Popovych S, Wong W, Castro M, Jordan CS, Froudarakis E, Becker L, Suckow S, Reimer J, Tolias AS, Anastassiou CA, Seung HS, Reid RC, Costa NMD. Structure and function of axo-axonic inhibition. Elife. 2021 12 01; 10. PMID: 34851292; PMCID: PMC8758143.
      Citations: 4     Fields:    Translation:AnimalsCells
    20. Yang Q, Walker E, Cotton RJ, Tolias AS, Pitkow X. Revealing nonlinear neural decoding by analyzing choices. Nat Commun. 2021 11 16; 12(1):6557. PMID: 34785652; PMCID: PMC8595442.
      Citations:    Fields:    Translation:AnimalsCells
    21. Tehovnik EJ, Froudarakis E, Scala F, Smirnakis SM, Patel SS, Tolias AS. Visuomotor control in mice and primates. Neurosci Biobehav Rev. 2021 11; 130:185-200. PMID: 34416241.
      Citations:    Fields:    Translation:AnimalsCells
    22. Denfield GH, Walker EY, Burg MF, Cadena SA, Tolias AS, Bethge M, Ecker AS. Learning divisive normalization in primary visual cortex. PLoS Comput Biol. 2021 06; 17(6):e1009028. PMID: 34097695; PMCID: PMC8211272.
      Citations: 1     Fields:    Translation:AnimalsCells
    23. Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fishell GJ, Foggetti A, Gao X, Goriounova NA, Hagihara K, Hall VJ, Helmstaedter M, Herculano S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Moradi Chameh H, Nath A, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann R, Serrano-Saiz E, Somogyi P, Tolias AS, Tosches MA, Vieira HM, Wozny C, Yong L, Yuan J, Zeng H, Lein E, Bokharaie V, Fi?th R, Ghaderi P, G?nt?rk?n O, K?hnemund M, Larra?aga P, Steiger JF, Tam?s G, Garc?a MT, Wuttke TV. Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2021 Apr; 24(4):613. PMID: 33277642; PMCID: PMC8182769.
      Citations: 1     Fields:    
    24. Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Ascoli GA, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Fishell GJ, Foggetti A, Gao X, Goriounova NA, Hagihara K, Hall VJ, Helmstaedter M, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Chameh HM, Mohapatra AN, Munguba H, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann RH, Serrano-Saiz E, Somogyi P, Tolias AS, Tosches MA, Wozny C, Liu Y, Yuan J, Zeng H, Lein E, Arma?anzas R, Bielza C, Bokharaie V, Feldmeyer D, Fi?th R, Ghaderi P, G?nt?rk?n O, K?hnemund M, Larra?aga P, Staiger JF, Tam?s G, Garc?a MT, Wuttke TV. Author Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2021 Apr; 24(4):612. PMID: 33742182; PMCID: PMC8012203.
      Citations: 1     Fields:    
    25. Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Ascoli GA, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Fishell GJ, Foggetti A, Gao X, Goriounova NA, Hagihara K, Hall VJ, Helmstaedter M, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Chameh HM, Mohapatra AN, Munguba H, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann RH, Serrano-Saiz E, Somogyi P, Tolias AS, Tosches MA, Wozny C, Liu Y, Yuan J, Zeng H, Lein E, Arma?anzas R, Bielza C, Bokharaie V, Feldmeyer D, Fi?th R, Ghaderi P, G?nt?rk?n O, K?hnemund M, Larra?aga P, Staiger JF, Tam?s G, Garc?a MT, Wuttke TV. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2020 12; 23(12):1456-1468. PMID: 32839617; PMCID: PMC7683348.
      Citations: 55     Fields:    Translation:HumansAnimalsCells
    26. Scala F, Bernabucci M, Castro JR, Hartmanis L, Jiang X, Miranda E, Mulherkar S, Tan ZH, Yao Z, Zeng H, Sandberg R, Tolias AS, Kobak D, Bernaerts Y, Cadwell CR, Laturnus S, Berens P. Phenotypic variation of transcriptomic cell types in mouse motor cortex. Nature. 2021 10; 598(7879):144-150. PMID: 33184512; PMCID: PMC8113357.
      Citations: 31     Fields:    Translation:AnimalsCells
    27. Moreaux LC, Yatsenko D, Sacher WD, Choi J, Lee C, Kubat NJ, Cotton RJ, Boyden ES, Lin MZ, Tian L, Tolias AS, Poon JKS, Shepard KL, Roukes ML. Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time. Neuron. 2020 10 14; 108(1):66-92. PMID: 33058767; PMCID: PMC8061790.
      Citations: 7     Fields:    Translation:AnimalsCells
    28. van de Ven GM, Siegelmann HT, Tolias AS. Brain-inspired replay for continual learning with artificial neural networks. Nat Commun. 2020 08 13; 11(1):4069. PMID: 32792531; PMCID: PMC7426273.
      Citations: 8     Fields:    
    29. Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OT, Gritton HJ, Romano MF, Gao R, Yu CJ, Tseng HA, Bensussen S, Narayan S, Yang CT, Freifeld L, Siciliano CA, Gupta I, Wang J, Pak N, Yoon YG, Ullmann JFP, Guner-Ataman B, Noamany H, Sheinkopf ZR, Park WM, Asano S, Keating AE, Trimmer JS, Reimer J, Tolias AS, Bear MF, Tye KM, Han X, Ahrens MB, Boyden ES. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. 2020 08 05; 107(3):470-486.e11. PMID: 32592656; PMCID: PMC7415598.
      Citations: 19     Fields:    Translation:AnimalsCells
    30. Cadwell CR, Scala F, Fahey PG, Mulherkar S, Sinz FH, Papadopoulos S, Tan ZH, Johnsson P, Hartmanis L, Li S, Cotton RJ, Tolias KF, Sandberg R, Jiang X, Tolias AS, Kobak D, Berens P. Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex. Elife. 2020 03 05; 9. PMID: 32134385; PMCID: PMC7162653.
      Citations: 12     Fields:    Translation:AnimalsCells
    31. Baker C, Froudarakis E, Yatsenko D, Tolias AS, Rosenbaum R. Inference of synaptic connectivity and external variability in neural microcircuits. J Comput Neurosci. 2020 05; 48(2):123-147. PMID: 32080777.
      Citations: 2     Fields:    Translation:HumansCells
    32. Walker EY, Cotton RJ, Ma WJ, Tolias AS. A neural basis of probabilistic computation in visual cortex. Nat Neurosci. 2020 01; 23(1):122-129. PMID: 31873286.
      Citations: 20     Fields:    Translation:AnimalsCells
    33. Scala F, Shan S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH, Papadopoulos S, Patel SS, Sandberg R, Jiang X, Tolias AS, Kobak D, Bernaerts Y, Laturnus S, Berens P. Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nat Commun. 2019 Nov 04; 10(1):5075. PMID: 31685814; PMCID: PMC6828750.
      Citations:    Fields:    
    34. Walker EY, Sinz FH, Cobos E, Muhammad T, Froudarakis E, Fahey PG, Ecker AS, Reimer J, Pitkow X, Tolias AS. Inception loops discover what excites neurons most using deep predictive models. Nat Neurosci. 2019 12; 22(12):2060-2065. PMID: 31686023.
      Citations: 15     Fields:    Translation:AnimalsCells
    35. Pitkow X, Reimer J, Tolias AS, Sinz FH, Bethge M. Engineering a Less Artificial Intelligence. Neuron. 2019 09 25; 103(6):967-979. PMID: 31557461.
      Citations: 25     Fields:    Translation:Humans
    36. Froudarakis E, Fahey PG, Reimer J, Smirnakis SM, Tehovnik EJ, Tolias AS. The Visual Cortex in Context. Annu Rev Vis Sci. 2019 09 15; 5:317-339. PMID: 31525143; PMCID: PMC7485906.
      Citations: 12     Fields:    Translation:HumansAnimals
    37. Scala F, Shan S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH, Papadopoulos S, Patel SS, Sandberg R, Jiang X, Tolias AS, Kobak D, Bernaerts Y, Laturnus S, Berens P. Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nat Commun. 2019 09 13; 10(1):4174. PMID: 31519874; PMCID: PMC6744474.
      Citations: 27     Fields:    Translation:AnimalsCells
    38. Egbert JR, Fahey PG, Reimer J, Owen CM, Evsikov AV, Nikolaev VO, Griesbeck O, Ray RS, Tolias AS, Jaffe LA. Follicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles?. Biol Reprod. 2019 08 01; 101(2):433-444. PMID: 31087036; PMCID: PMC7302518.
      Citations: 6     Fields:    Translation:AnimalsCells
    39. Liu G, Froudarakis E, Patel JM, Kochukov MY, Pekarek B, Hunt PJ, Patel M, Ung K, Fu CH, Jo J, Lee HK, Tolias AS, Arenkiel BR. Target specific functions of EPL interneurons in olfactory circuits. Nat Commun. 2019 07 29; 10(1):3369. PMID: 31358754; PMCID: PMC6662826.
      Citations: 6     Fields:    Translation:AnimalsCells
    40. Denfield GH, Walker EY, Cadena SA, Gatys LA, Tolias AS, Bethge M, Ecker AS. Deep convolutional models improve predictions of macaque V1 responses to natural images. PLoS Comput Biol. 2019 04; 15(4):e1006897. PMID: 31013278; PMCID: PMC6499433.
      Citations: 41     Fields:    Translation:AnimalsCells
    41. Subramaniyan M, Ecker AS, Patel SS, Cotton RJ, Pitkow X, Berens P, Tolias AS, Bethge M. Faster processing of moving compared with flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion. J Neurophysiol. 2018 11 01; 120(5):2430-2452. PMID: 30365390; PMCID: PMC6295525.
      Citations: 8     Fields:    Translation:AnimalsCells
    42. Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias AS. Attentional fluctuations induce shared variability in macaque primary visual cortex. Nat Commun. 2018 07 09; 9(1):2654. PMID: 29985411; PMCID: PMC6037755.
      Citations: 17     Fields:    Translation:AnimalsCells
    43. Freeman J, Deneux T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Sofroniew NJ, Reimer J, Froudarakis E, Theis L, Tolias AS, Berens P, Chenkov N, McColgan T, Rogerson LE, Euler T, Rom?n Ros?n M, Bethge M. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS Comput Biol. 2018 05; 14(5):e1006157. PMID: 29782491; PMCID: PMC5997358.
      Citations: 37     Fields:    Translation:AnimalsCells
    44. Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias AS. Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq. Nat Protoc. 2017 Dec; 12(12):2531-2553. PMID: 29189773; PMCID: PMC6422019.
      Citations: 44     Fields:    Translation:AnimalsCells
    45. Cadwell CR, Sandberg R, Jiang X, Tolias AS. Q&A: using Patch-seq to profile single cells. BMC Biol. 2017 07 06; 15(1):58. PMID: 28679385; PMCID: PMC5499043.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    46. Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu C, Cruz-Hern?ndez JC. In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nat Methods. 2017 Apr; 14(4):388-390. PMID: 28218900; PMCID: PMC6441362.
      Citations: 153     Fields:    Translation:AnimalsCells
    47. Quast KB, Ung K, Froudarakis E, Huang L, Herman I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR. Developmental broadening of inhibitory sensory maps. Nat Neurosci. 2017 02; 20(2):189-199. PMID: 28024159; PMCID: PMC5510602.
      Citations: 22     Fields:    Translation:AnimalsCells
    48. Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes ML. Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics. Neurophotonics. 2017 Jan; 4(1):011002. PMID: 27990451; PMCID: PMC5136672.
      Citations: 23     
    49. Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias AS. Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex. Nat Commun. 2016 11 08; 7:13289. PMID: 27824036; PMCID: PMC5105162.
      Citations: 228     Fields:    Translation:HumansAnimalsCells
    50. Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Berens P, Ecker AS, Tolias AS. Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex". Science. 2016 09 09; 353(6304):1108. PMID: 27609883.
      Citations: 8     Fields:    Translation:HumansCells
    51. Denfield GH, Fahey PG, Reimer J, Tolias AS. Investigating the Limits of Neurovascular Coupling. Neuron. 2016 Sep 07; 91(5):954-956. PMID: 27608758.
      Citations: 1     Fields:    Translation:Animals
    52. Froudarakis E, Reimer J, Theis L, Berens P, Rom?n Ros?n M, Baden T, Euler T, Tolias AS, Bethge M. Benchmarking Spike Rate Inference in Population Calcium Imaging. Neuron. 2016 05 04; 90(3):471-82. PMID: 27151639; PMCID: PMC4888799.
      Citations: 62     Fields:    Translation:AnimalsCells
    53. Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KD. Spike sorting for large, dense electrode arrays. Nat Neurosci. 2016 Apr; 19(4):634-641. PMID: 26974951; PMCID: PMC4817237.
      Citations: 233     Fields:    Translation:Animals
    54. Denfield GH, Ecker AS, Bethge M, Tolias AS. On the Structure of Neuronal Population Activity under Fluctuations in Attentional State. J Neurosci. 2016 Feb 03; 36(5):1775-89. PMID: 26843656; PMCID: PMC4737784.
      Citations: 41     Fields:    Translation:HumansCells
    55. Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Tolias KF, Sandberg R, Tolias AS, Bethge M. Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq. Nat Biotechnol. 2016 Feb; 34(2):199-203. PMID: 26689543; PMCID: PMC4840019.
      Citations: 183     Fields:    Translation:AnimalsCells
    56. Jiang X, Shen S, Cadwell CR, Sinz F, Patel S, Berens P, Ecker AS, Tolias AS. Principles of connectivity among morphologically defined cell types in adult neocortex. Science. 2015 Nov 27; 350(6264):aac9462. PMID: 26612957; PMCID: PMC4809866.
      Citations: 313     Fields:    Translation:AnimalsCells
    57. McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DA. Waking State: Rapid Variations Modulate Neural and Behavioral Responses. Neuron. 2015 Sep 23; 87(6):1143-1161. PMID: 26402600; PMCID: PMC4718218.
      Citations: 253     Fields:    Translation:HumansAnimalsCells
    58. Yatsenko D, Froudarakis E, Cotton RJ, Tolias AS, Josic K, Ecker AS. Improved estimation and interpretation of correlations in neural circuits. PLoS Comput Biol. 2015 Mar; 11(3):e1004083. PMID: 25826696; PMCID: PMC4380429.
      Citations: 27     Fields:    Translation:AnimalsCells
    59. Reddy GD, Cotton RJ, Tolias AS, Saggau P. Random-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging. Adv Exp Med Biol. 2015; 859:455-72. PMID: 26238064.
      Citations: 2     Fields:    Translation:AnimalsCells
    60. Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias AS. Pupil fluctuations track fast switching of cortical states during quiet wakefulness. Neuron. 2014 Oct 22; 84(2):355-62. PMID: 25374359; PMCID: PMC4323337.
      Citations: 247     Fields:    Translation:AnimalsCells
    61. Ecker AS, Tolias AS. Is there signal in the noise? Nat Neurosci. 2014 Jun; 17(6):750-1. PMID: 24866037.
      Citations: 7     Fields:    Translation:AnimalsCells
    62. Froudarakis E, Cotton RJ, Yatsenko D, Saggau P, Berens P, Ecker AS, Sinz FH, Bethge M, Tolias AS. Population code in mouse V1 facilitates readout of natural scenes through increased sparseness. Nat Neurosci. 2014 Jun; 17(6):851-7. PMID: 24747577; PMCID: PMC4106281.
      Citations: 74     Fields:    Translation:Animals
    63. Cotton RJ, Subramaniyan M, Denfield GH, Cadwell CR, Smirnakis SM, Ecker AS, Berens P, Bethge M, Tolias AS. State dependence of noise correlations in macaque primary visual cortex. Neuron. 2014 Apr 02; 82(1):235-48. PMID: 24698278; PMCID: PMC3990250.
      Citations: 163     Fields:    Translation:AnimalsCells
    64. Qamar AT, Cotton RJ, George RG, Beck JM, Prezhdo E, Laudano A, Tolias AS, Ma WJ. Trial-to-trial, uncertainty-based adjustment of decision boundaries in visual categorization. Proc Natl Acad Sci U S A. 2013 Dec 10; 110(50):20332-7. PMID: 24272938; PMCID: PMC3864339.
      Citations: 19     Fields:    Translation:HumansAnimals
    65. Cotton RJ, Froudarakis E, Storer P, Saggau P, Tolias AS. Three-dimensional mapping of microcircuit correlation structure. Front Neural Circuits. 2013; 7:151. PMID: 24133414; PMCID: PMC3794294.
      Citations: 30     Fields:    Translation:AnimalsCells
    66. Subramaniyan M, Ecker AS, Berens P, Tolias AS. Macaque monkeys perceive the flash lag illusion. PLoS One. 2013; 8(3):e58788. PMID: 23527024; PMCID: PMC3602542.
      Citations: 6     Fields:    Translation:HumansAnimals
    67. Ecker AS, Cotton RJ, Ma WJ, Bethge M, Tolias AS, Berens P. A fast and simple population code for orientation in primate V1. J Neurosci. 2012 Aug 01; 32(31):10618-26. PMID: 22855811; PMCID: PMC3506189.
      Citations: 52     Fields:    Translation:AnimalsCells
    68. Beauchamp MS, Sun P, Baum SH, Tolias AS, Yoshor D. Electrocorticography links human temporoparietal junction to visual perception. Nat Neurosci. 2012 Jun 03; 15(7):957-9. PMID: 22660480; PMCID: PMC3386474.
      Citations: 32     Fields:    Translation:Humans
    69. Berens P, Tolias AS, Bethge M, Ecker AS. The effect of noise correlations in populations of diversely tuned neurons. J Neurosci. 2011 Oct 05; 31(40):14272-83. PMID: 21976512; PMCID: PMC3221941.
      Citations: 116     Fields:    Translation:AnimalsCells
    70. Sultan F, Augath M, Murayama Y, Tolias AS, Logothetis N. esfMRI of the upper STS: further evidence for the lack of electrically induced polysynaptic propagation of activity in the neocortex. Magn Reson Imaging. 2011 Dec; 29(10):1374-81. PMID: 21757310.
      Citations: 8     Fields:    Translation:AnimalsCells
    71. Tolias AS, Logothetis NK, Goense J, Ku SP. fMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques. Neuron. 2011 Apr 28; 70(2):352-62. PMID: 21521619.
      Citations: 66     Fields:    Translation:Animals
    72. Ecker AS, Gerwinn S, Tolias AS, Bethge M, Berens P. Reassessing optimal neural population codes with neurometric functions. Proc Natl Acad Sci U S A. 2011 Mar 15; 108(11):4423-8. PMID: 21368193; PMCID: PMC3060259.
      Citations: 25     Fields:    Translation:Cells
    73. Logothetis NK, Tolias AS, Keliris GA. The role of the primary visual cortex in perceptual suppression of salient visual stimuli. J Neurosci. 2010 Sep 15; 30(37):12353-65. PMID: 20844131; PMCID: PMC2962415.
      Citations: 30     Fields:    Translation:AnimalsCells
    74. Berens P, Keliris GA, Bethge M, Logothetis NK, Tolias AS, Ecker AS. Decorrelated neuronal firing in cortical microcircuits. Science. 2010 Jan 29; 327(5965):584-7. PMID: 20110506.
      Citations: 307     Fields:    Translation:AnimalsCells
    75. Berens P, Ecker AS, Tolias AS, Bethge M, Macke JH. Generating spike trains with specified correlation coefficients. Neural Comput. 2009 Feb; 21(2):397-423. PMID: 19196233.
      Citations: 55     Fields:    Translation:AnimalsCells
    76. Tehovnik EJ, Slocum WM, Smirnakis SM, Tolias AS. Microstimulation of visual cortex to restore vision. Prog Brain Res. 2009; 175:347-75. PMID: 19660667; PMCID: PMC7485627.
      Citations: 23     Fields:    Translation:HumansAnimals
    77. Keliris GA, Ecker AS, Logothetis NK, Tolias AS, Berens P. Feature selectivity of the gamma-band of the local field potential in primate primary visual cortex. Front Neurosci. 2008 Dec; 2(2):199-207. PMID: 19225593; PMCID: PMC2622750.
      Citations: 72     
    78. Keliris GA, Ecker AS, Logothetis NK, Tolias AS, Berens P. Comparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex. Front Syst Neurosci. 2008; 2:2. PMID: 18958246; PMCID: PMC2526275.
      Citations: 74     
    79. Ecker AS, Siapas AG, Hoenselaar A, Keliris GA, Logothetis NK, Tolias AS. Recording chronically from the same neurons in awake, behaving primates. J Neurophysiol. 2007 Dec; 98(6):3780-90. PMID: 17942615.
      Citations: 80     Fields:    Translation:AnimalsCells
    80. Ku SP, Merkle H, Tolias AS, Logothetis NK, Goense JB. fMRI of the temporal lobe of the awake monkey at 7 T. Neuroimage. 2008 Feb 01; 39(3):1081-93. PMID: 18024083.
      Citations: 14     Fields:    Translation:Animals
    81. Hayashi R, Nishida S, Tolias A, Logothetis NK. A method for generating a "purely first-order" dichoptic motion stimulus. J Vis. 2007 Jun 19; 7(8):7. PMID: 17685814.
      Citations: 3     Fields:    Translation:Humans
    82. Schmid MC, Weber B, Tolias AS, Augath M, Logothetis NK, Smirnakis SM. Spatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization. J Cereb Blood Flow Metab. 2007 Jun; 27(6):1248-61. PMID: 17213863.
      Citations: 40     Fields:    Translation:Animals
    83. Tehovnik EJ, Tolias AS, Sultan F, Slocum WM, Logothetis NK. Direct and indirect activation of cortical neurons by electrical microstimulation. J Neurophysiol. 2006 Aug; 96(2):512-21. PMID: 16835359.
      Citations: 139     Fields:    Translation:HumansAnimalsCells
    84. Tolias AS, Sultan F, Augath M, Oeltermann A, Tehovnik EJ, Schiller PH, Logothetis NK. Mapping cortical activity elicited with electrical microstimulation using FMRI in the macaque. Neuron. 2005 Dec 22; 48(6):901-11. PMID: 16364895.
      Citations: 116     Fields:    Translation:AnimalsCells
    85. Brewer AA, Schmid MC, Tolias AS, Augath M, Inhoffen W, Wandell BA, Logothetis NK, Smirnakis SM, Sch?z A. Lack of long-term cortical reorganization after macaque retinal lesions. Nature. 2005 May 19; 435(7040):300-7. PMID: 15902248.
      Citations: 81     Fields:    Translation:Animals
    86. Tolias AS, Keliris GA, Smirnakis SM, Logothetis NK. Neurons in macaque area V4 acquire directional tuning after adaptation to motion stimuli. Nat Neurosci. 2005 May; 8(5):591-3. PMID: 15834417.
      Citations: 51     Fields:    Translation:AnimalsCells
    87. Meyer C, Tolias A, Platanisiotis D, Stumvoll M, Vlachos L, Mitrakou A. Increased renal glucose metabolism in Type 1 diabetes mellitus. Diabet Med. 2005 Apr; 22(4):453-9. PMID: 15787672.
      Citations: 1     Fields:    Translation:Humans
    88. Schiller PH, Slocum WM, Carvey C, Tolias AS. Are express saccades generated under natural viewing conditions? Eur J Neurosci. 2004 Nov; 20(9):2467-73. PMID: 15525287.
      Citations: 8     Fields:    Translation:Animals
    89. Kourtzi Z, Tolias AS, Altmann CF, Augath M, Logothetis NK. Integration of local features into global shapes: monkey and human FMRI studies. Neuron. 2003 Jan 23; 37(2):333-46. PMID: 12546827.
      Citations: 105     Fields:    Translation:HumansAnimalsCTClinical Trials
    90. Tolias AS, Smirnakis SM, Augath MA, Trinath T, Logothetis NK. Motion processing in the macaque: revisited with functional magnetic resonance imaging. J Neurosci. 2001 Nov 01; 21(21):8594-601. PMID: 11606647; PMCID: PMC6762813.
      Citations: 24     Fields:    Translation:Animals
    91. Tolias AS, Moore T, Smirnakis SM, Tehovnik EJ, Siapas AG, Schiller PH. Eye movements modulate visual receptive fields of V4 neurons. Neuron. 2001 Mar; 29(3):757-67. PMID: 11301034.
      Citations: 123     Fields:    Translation:AnimalsCells
    92. Moore T, Tolias AS, Schiller PH. Visual representations during saccadic eye movements. Proc Natl Acad Sci U S A. 1998 Jul 21; 95(15):8981-4. PMID: 9671790; PMCID: PMC21188.
      Citations: 47     Fields:    Translation:AnimalsCells
    93. Tehovnik EJ, Slocum WM, Tolias AS, Schiller PH. Saccades induced electrically from the dorsomedial frontal cortex: evidence for a head-centered representation. Brain Res. 1998 Jun 08; 795(1-2):287-91. PMID: 9622653.
      Citations: 3     Fields:    Translation:Animals
    94. Stromeyer CF, Chaparro A, Tolias AS, Kronauer RE. Colour adaptation modifies the long-wave versus middle-wave cone weights and temporal phases in human luminance (but not red-green) mechanism. J Physiol. 1997 Feb 15; 499 ( Pt 1):227-54. PMID: 9061652; PMCID: PMC1159349.
      Citations: 6     Fields:    Translation:HumansCells
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