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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Midani FS, David LA. Tracking defined microbial communities by multicolor flow cytometry reveals tradeoffs between productivity and diversity. Front Microbiol. 2022; 13:910390. PMID: 36687598; PMCID: PMC9849913.
    2. Norsigian CJ, Danhof HA, Brand CK, Midani FS, Broddrick JT, Savidge TC, Britton RA, Palsson BO, Spinler JK, Monk JM. Systems biology approach to functionally assess the Clostridioides difficile pangenome reveals genetic diversity with discriminatory power. Proc Natl Acad Sci U S A. 2022 05 03; 119(18):e2119396119. PMID: 35476524; PMCID: PMC9170149.
      Citations:    Fields:    Translation:HumansCells
    3. Barrasso K, Chac D, Debela MD, Geigel C, Steenhaut A, Rivera Seda A, Dunmire CN, Harris JB, Larocque RC, Midani FS, Qadri F, Yan J, Weil AA, Ng WL. Impact of a human gut microbe on Vibrio cholerae host colonization through biofilm enhancement. Elife. 2022 03 28; 11. PMID: 35343438; PMCID: PMC8993218.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    4. Schaefer L, Trujillo-Vargas CM, Midani FS, Pflugfelder SC, Britton RA, de Paiva CS. Gut Microbiota From Sj?gren syndrome Patients Causes Decreased T Regulatory Cells in the Lymphoid Organs and Desiccation-Induced Corneal Barrier Disruption in Mice. Front Med (Lausanne). 2022; 9:852918. PMID: 35355610; PMCID: PMC8959809.
    5. Midani FS, Collins J, Britton RA. AMiGA: Software for Automated Analysis of Microbial Growth Assays. mSystems. 2021 Aug 31; 6(4):e0050821. PMID: 34254821; PMCID: PMC8409736.
      Citations: 1     
    6. Saber MM, Midani FS, Chowdhury F, Khan AI, Begum YA, Ryan ET, David LA, Calderwood SB, Harris JB, LaRocque RC, Qadri F, Shapiro BJ, Weil AA, Levade I. Predicting Vibrio cholerae Infection and Disease Severity Using Metagenomics in a Prospective Cohort Study. J Infect Dis. 2021 02 03; 223(2):342-351. PMID: 32610345; PMCID: PMC7857355.
      Citations: 7     Fields:    Translation:Cells
    7. Norsigian CJ, Danhof HA, Brand CK, Oezguen N, Midani FS, Palsson BO, Savidge TC, Britton RA, Spinler JK, Monk JM. Systems biology analysis of the Clostridioides difficile core-genome contextualizes microenvironmental evolutionary pressures leading to genotypic and phenotypic divergence. NPJ Syst Biol Appl. 2020 10 20; 6(1):31. PMID: 33082337; PMCID: PMC7576604.
      Citations: 8     Fields:    Translation:Cells
    8. Bornbusch SL, Greene LK, McKenney EA, Volkoff SJ, Midani FS, Joseph G, Gerhard WA, Iloghalu U, Granek J, Gunsch CK. A comparative study of gut microbiomes in captive nocturnal strepsirrhines. Am J Primatol. 2019 10; 81(10-11):e22986. PMID: 31081142.
      Citations: 4     Fields:    Translation:AnimalsCells
    9. Rocca JD, Simonin M, Blaszczak JR, Ernakovich JG, Gibbons SM, Midani FS, Washburne AD. The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities. Front Microbiol. 2018; 9:3272. PMID: 30687263; PMCID: PMC6335337.
      Citations: 23     
    10. Midani FS, Weil AA, Chowdhury F, Begum YA, Khan AI, Debela MD, Durand HK, Reese AT, Nimmagadda SN, Silverman JD, Ellis CN, Ryan ET, Calderwood SB, Harris JB, Qadri F, David LA, LaRocque RC. Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection. J Infect Dis. 2018 07 13; 218(4):645-653. PMID: 29659916; PMCID: PMC6047457.
      Citations: 25     Fields:    Translation:HumansCells
    11. Reese AT, Cho EH, Klitzman B, Nichols SP, Wisniewski NA, Villa MM, Durand HK, Jiang S, Midani FS, Nimmagadda SN, O'Connell TM, Wright JP, Deshusses MA, David LA. Antibiotic-induced changes in the microbiota disrupt redox dynamics in the gut. Elife. 2018 06 19; 7. PMID: 29916366; PMCID: PMC6008055.
      Citations: 44     Fields:    Translation:HumansAnimalsCells
    12. Midani FS, Wynn ML, Schnell S. The importance of accurately correcting for the natural abundance of stable isotopes. Anal Biochem. 2017 03 01; 520:27-43. PMID: 27989585; PMCID: PMC5343595.
      Citations: 15     Fields:    
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