OLGADUDCHENKOOLGA DUDCHENKO0.000000000000000.000000000000006786DUDCHENKO, OLGAAssistant Professorprns:coAuthorOfcoauthor ofFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionvivo:hasResearchArearesearch areasvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titlerdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonIvanBochkovIvan Dmitrievich Bochkov10041Bochkov, IvanGraduate Student74Professor10Assistant Professor54Instructor14Associate Professor42Director6Adjunct Professor53Graduate StudentAuthorship 8682263Authorship 868364127432957Darrow EM, Huntley MH, Dudchenko O, Stamenova EK, Durand NC, Sun Z, Huang SC, Sanborn AL, Machol I, Shamim M, Seberg AP, Lander ES, Chadwick BP, Aiden ELProceedings of the National Academy of Sciences of the United States of AmericaDeletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture. Proc Natl Acad Sci U S A. 2016 08 02; 113(31):E4504-12.Proc Natl Acad Sci U S A2016-07-18T00:00:002016Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture.28336562Dudchenko O, Batra SS, Omer AD, Nyquist SK, Hoeger M, Durand NC, Shamim MS, Machol I, Lander ES, Aiden AP, Aiden ELScience (New York, N.Y.)De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science. 2017 04 07; 356(6333):92-95.Science2017-03-23T00:00:002017De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.PerAdastraPer Aspera Adastra13052Adastra, PerPostdoc Fellows and AssociatesAuthorship 8845211129145861Larsen PA, Harris RA, Liu Y, Murali SC, Campbell CR, Brown AD, Sullivan BA, Shelton J, Brown SJ, Raveendran M, Dudchenko O, Machol I, Durand NC, Shamim MS, Aiden EL, Muzny DM, Gibbs RA, Yoder AD, Rogers J, Worley KCBMC biologyHybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus). BMC Biol. 2017 Nov 16; 15(1):110.BMC Biol2017-11-16T00:00:002017Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus).AVIVAAIDENAVIVA AIDEN13510AIDEN, AVIVAAssistant Professortrue1ProfessorProfessortrue1Assistant ProfessorAssistant Professortrue1Assistant ProfessorAssistant ProfessorD000330Living Beings19920.919939AedesD008322Living Beings2473520.849322MammalsD002875Anatomy1492460.907224ChromosomesD049750Genes & Molecular Sequences25980.930658Genome, InsectD016678Genes & Molecular Sequences2816730.734014GenomeAuthorship 916099230429615Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, Campbell CL, Chan S, Cox E, Evans BR, Fansiri T, Filipovic I, Fontaine A, Gloria-Soria A, Hall R, Joardar VS, Jones AK, Kay RGG, Kodali VK, Lee J, Lycett GJ, Mitchell SN, Muehling J, Murphy MR, Omer AD, Partridge FA, Peluso P, Aiden AP, Ramasamy V, Ra?ic G, Roy S, Saavedra-Rodriguez K, Sharan S, Sharma A, Smith ML, Turner J, Weakley AM, Zhao Z, Akbari OS, Black WC, Cao H, Darby AC, Hill CA, Johnston JS, Murphy TD, Raikhel AS, Sattelle DB, Sharakhov IV, White BJ, Zhao L, Aiden EL, Mann RS, Lambrechts L, Powell JR, Sharakhova MV, Tu Z, Robertson HM, McBride CS, Hastie AR, Korlach J, Neafsey DE, Phillippy AM, Vosshall LBNatureImproved reference genome of Aedes aegypti informs arbovirus vector control. Nature. 2018 11; 563(7732):501-507.Nature2018-11-14T00:00:002018Improved reference genome of Aedes aegypti informs arbovirus vector control.Department of MedicineDepartment of PediatricsDepartment of Molecular & Human GeneticsMedicine-Athero & LipoproteinsMolecular & Human GeneticsPediatrics-NewbornBaylor College of MedicineKIMWORLEYKIM WORLEY29.70508570000000-95.401808700000003243WORLEY, KIMProfessorXIANGQINXIANG QIN0.000000000000000.00000000000000245QIN, XIANGAssistant ProfessorERICBOERWINKLEERIC BOERWINKLE0.000000000000000.000000000000002653BOERWINKLE, ERICAdjunct ProfessorDONNAMUZNYDONNA MUZNY0.000000000000000.000000000000003166MUZNY, DONNAAssistant ProfessorJAMESLUPSKIJAMES LUPSKI29.71073630000000-95.396604500000003140LUPSKI, JAMESProfessorHUIZHENGHUI ZHENG0.000000000000000.000000000000003105ZHENG, HUIProfessorRICHARDGIBBSRICHARD GIBBS0.000000000000000.000000000000003131GIBBS, RICHARDDistinguished Service ProfessorAuthorship 946100431043755Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ball?n-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz JNature geneticsThe genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet. 2019 05; 51(5):877-884.Nat Genet2019-05-01T00:00:002019The genome sequence of segmental allotetraploid peanut Arachis hypogaea.true1ProfessorProfessortrue1Graduate StudentGraduate StudentGenetics & Genomics71Postdoc Fellows and AssociatesOne Baylor PlazaHouston, 77030TXPostDocJUNHYOUNGPARKJUNHYOUNG PARK0.000000000000000.000000000000006530PARK, JUNHYOUNGInstructor1.413680.0204134159research areas0.5005120.04022610coauthor of18.0392.1002860similar to1146selected publicationsLINYANMENGLINYAN MENG0.000000000000000.000000000000005916MENG, LINYANAssociate ProfessorDIMOSGKOUNTAROULISDIMOS GKOUNTAROULIS15539GKOUNTAROULIS, DIMOSInstructortrue1Adjunct ProfessorAdjunct ProfessorAuthorship 986259332236524Field MA, Rosen BD, Dudchenko O, Chan EKF, Minoche AE, Edwards RJ, Barton K, Lyons RJ, Tuipulotu DE, Hayes VM, D Omer A, Colaric Z, Keilwagen J, Skvortsova K, Bogdanovic O, Smith MA, Aiden EL, Smith TPL, Zammit RA, Ballard JWOGigaScienceCanfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C. Gigascience. 2020 04 01; 9(4).Gigascience2020-04-01T00:00:002020Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.Authorship 9866441132258427Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, Howe K, Sims Y, Torrance J, Tracey A, Challis R, Durbin R, Blaxter MWellcome open researchThe genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758. Wellcome Open Res. 2020; 5:33.Wellcome Open Res2020-02-19T00:00:002020The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758.Authorship 988385332352532Kenny NJ, McCarthy SA, Dudchenko O, James K, Betteridge E, Corton C, Dolucan J, Mead D, Oliver K, Omer AD, Pelan S, Ryan Y, Sims Y, Skelton J, Smith M, Torrance J, Weisz D, Wipat A, Aiden EL, Howe K, Williams STGigaScienceThe gene-rich genome of the scallop Pecten maximus. Gigascience. 2020 05 01; 9(5).Gigascience2020-05-01T00:00:002020The gene-rich genome of the scallop Pecten maximus.Authorship 988659732365406Humble E, Dobrynin P, Senn H, Chuven J, Scott AF, Mohr DW, Dudchenko O, Omer AD, Colaric Z, Lieberman Aiden E, Al Dhaheri SS, Wildt D, Oliaji S, Tamazian G, Pukazhenthi B, Ogden R, Koepfli KPMolecular ecology resourcesChromosomal-level genome assembly of the scimitar-horned oryx: Insights into diversity and demography of a species extinct in the wild. Mol Ecol Resour. 2020 Nov; 20(6):1668-1681.Mol Ecol Resour2020-06-07T00:00:002020Chromosomal-level genome assembly of the scimitar-horned oryx: Insights into diversity and demography of a species extinct in the wild.Authorship 9926891132587897Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Sims Y, Torrance J, Tracey A, Howe K, Challis R, Durbin R, Blaxter MWellcome open researchThe genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758. Wellcome Open Res. 2020; 5:18.Wellcome Open Res2020-02-03T00:00:002020The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758.true1InstructorInstructorAuthorship 10133669Authorship 1013482333677057Young ND, Stroehlein AJ, Kinkar L, Wang T, Sohn WM, Chang BCH, Kaur P, Weisz D, Dudchenko O, Aiden EL, Korhonen PK, Gasser RBGenomicsHigh-quality reference genome for Clonorchis sinensis. Genomics. 2021 05; 113(3):1605-1615.Genomics2021-03-04T00:00:002021High-quality reference genome for Clonorchis sinensis.33686424Colella JP, Tigano A, Dudchenko O, Omer AD, Khan R, Bochkov ID, Aiden EL, MacManes MDThe Journal of heredityLimited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice. J Hered. 2021 05 24; 112(3):286-302.J Hered2021-05-24T00:00:002021Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice.Authorship 1013894433726677Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier D, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWOBMC genomicsChromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome. BMC Genomics. 2021 Mar 16; 22(1):188.BMC Genomics2021-03-16T00:00:002021Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.Authorship 1017310333919286Kaur P, Lui C, Dudchenko O, Nandety RS, Hurgobin B, Pham M, Lieberman Aiden E, Wen J, Mysore KInternational journal of molecular sciencesDelineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly. Int J Mol Sci. 2021 Apr 21; 22(9).Int J Mol Sci2021-04-21T00:00:002021Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly.Authorship 1018413333989525Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JDCurrent biology : CBGenome-wide diversity in the California condor tracks its prehistoric abundance and decline. Curr Biol. 2021 07 12; 31(13):2939-2946.e5.Curr Biol2021-05-13T00:00:002021Genome-wide diversity in the California condor tracks its prehistoric abundance and decline.Authorship 1019504234045355Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Sede?o Cacciatore ?, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei PJ, Kornberg RD, Warren WC, Cary G, G?mez-Skarmeta JL, Hinman V, Lindblad-Toh K, Di Palma F, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, Medema RH, van Steensel B, de Wit E, Onuchic JN, Di Pierro M, Lieberman Aiden E, Rowland BDScience (New York, N.Y.)3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science. 2021 05 28; 372(6545):984-989.Science2021-05-28T00:00:0020213D genomics across the tree of life reveals condensin II as a determinant of architecture type.Authorship 1028754634460814Van Dam MH, Cabras AA, Henderson JB, Rominger AJ, P?rez Estrada C, Omer AD, Dudchenko O, Lieberman Aiden E, Lam AWPLoS geneticsThe Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution. PLoS Genet. 2021 08; 17(8):e1009745.PLoS Genet2021-08-30T00:00:002021The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution.true1ProfessorProfessortrue1Distinguished Service ProfessorDistinguished Service ProfessorAuthorship 10381375Authorship 10384073Authorship 103996010Authorship 1041636435294470Davik J, R?en D, Lys?e E, Buti M, Rossman S, Alsheikh M, Aiden EL, Dudchenko O, Sargent DJPloS oneA chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.). PLoS One. 2022; 17(3):e0265096.PLoS One2022-03-16T00:00:002022A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.).35271737Tigano A, Khan R, Omer AD, Weisz D, Dudchenko O, Multani AS, Pathak S, Behringer RR, Aiden EL, Fisher H, MacManes MDEvolution; international journal of organic evolutionChromosome size affects sequence divergence between species through the interplay of recombination and selection. Evolution. 2022 Apr; 76(4):782-798.Evolution2022-03-23T00:00:002022Chromosome size affects sequence divergence between species through the interplay of recombination and selection.35348671Robledo-Ruiz DA, Gan HM, Kaur P, Dudchenko O, Weisz D, Khan R, Lieberman Aiden E, Osipova E, Hiller M, Morales HE, Magrath MJL, Clarke RH, Sunnucks P, Pavlova AGigaScienceChromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater. Gigascience. 2022 03 29; 11.Gigascience2022-03-29T00:00:002022Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater.35167626Stroehlein AJ, Korhonen PK, Lee VV, Ralph SA, Mentink-Kane M, You H, McManus DP, Tchuent? LT, Stothard JR, Kaur P, Dudchenko O, Aiden EL, Yang B, Yang H, Emery AM, Webster BL, Brindley PJ, Rollinson D, Chang BCH, Gasser RB, Young NDPLoS pathogensChromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation. PLoS Pathog. 2022 02; 18(2):e1010288.PLoS Pathog2022-02-15T00:00:002022Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation.Authorship 10443333Authorship 1044526335452284Field MA, Yadav S, Dudchenko O, Esvaran M, Rosen BD, Skvortsova K, Edwards RJ, Keilwagen J, Cochran BJ, Manandhar B, Bustamante S, Rasmussen JA, Melvin RG, Chernoff B, Omer A, Colaric Z, Chan EKF, Minoche AE, Smith TPL, Gilbert MTP, Bogdanovic O, Zammit RA, Thomas T, Aiden EL, Ballard JWOScience advancesThe Australian dingo is an early offshoot of modern breed dogs. Sci Adv. 2022 04 22; 8(16):eabm5944.Sci Adv2022-04-22T00:00:002022The Australian dingo is an early offshoot of modern breed dogs.35472421Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JDCurrent biology : CBResponse to Bakker et al. Curr Biol. 2022 04 25; 32(8):R358-R359.Curr Biol2022-04-25T00:00:002022Response to Bakker et al.Authorship 1049831535779281Garg G, Kamphuis LG, Bayer PE, Kaur P, Dudchenko O, Taylor CM, Frick KM, Foley RC, Gao LL, Aiden EL, Edwards D, Singh KBThe Plant journal : for cell and molecular biologyA pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits. Plant J. 2022 09; 111(5):1252-1266.Plant J2022-08-11T00:00:002022A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits.Authorship 10514666Authorship 1051489235886053Mohr DW, Gaughran SJ, Paschall J, Naguib A, Pang AWC, Dudchenko O, Aiden EL, Church DM, Scott AFGenesA Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of "Genetic Purging" and Genomic Stability. Genes (Basel). 2022 07 18; 13(7).Genes (Basel)2022-07-18T00:00:002022A Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of "Genetic Purging" and Genomic Stability.35894178Wilder AP, Dudchenko O, Curry C, Korody M, Turbek SP, Daly M, Misuraca A, Wang G, Khan R, Weisz D, Fronczek J, Aiden EL, Houck ML, Shier DM, Ryder OA, Steiner CCGenome biology and evolutionA Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biol Evol. 2022 08 03; 14(8).Genome Biol Evol2022-08-03T00:00:002022A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population.Authorship 10558582Authorship 10586205Authorship 10573084Authorship 105768621Authorship 105548417Authorship 1061721236283406Mohajeri K, Yadav R, D'haene E, Boone PM, Erdin S, Gao D, Moyses-Oliveira M, Bhavsar R, Currall BB, O'Keefe K, Burt ND, Lowther C, Lucente D, Salani M, Larson M, Redin C, Dudchenko O, Aiden EL, Menten B, Tai DJC, Gusella JF, Vergult S, Talkowski MEAmerican journal of human geneticsTranscriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models. Am J Hum Genet. 2022 11 03; 109(11):2049-2067.Am J Hum Genet2022-10-24T00:00:002022Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models.36513421Garg V, Dudchenko O, Wang J, Khan AW, Gupta S, Kaur P, Han K, Saxena RK, Kale SM, Pham M, Yu J, Chitikineni A, Zhang Z, Fan G, Lui C, Valluri V, Meng F, Bhandari A, Liu X, Yang T, Chen H, Valliyodan B, Roorkiwal M, Shi C, Yang HB, Durand NC, Pandey MK, Li G, Barmukh R, Wang X, Chen X, Lam HM, Jiang H, Zong X, Liang X, Liu X, Liao B, Guo B, Jackson S, Nguyen HT, Zhuang W, Shubo W, Wang X, Aiden EL, Bennetzen JL, Varshney RKJournal of advanced researchChromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement. J Adv Res. 2022 12; 42:315-329.J Adv Res2021-11-03T00:00:002021Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement.36590460Bursell MG, Dikow RB, Figueir? HV, Dudchenko O, Flanagan JP, Aiden EL, Goossens B, Nathan SKSS, Johnson WE, Koepfli KP, Frandsen PBiScienceWhole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories. iScience. 2022 Dec 22; 25(12):105647.iScience2022-12-09T00:00:002022Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories.36331334Bruna T, Aryal R, Dudchenko O, Sargent DJ, Mead D, Buti M, Cavallini A, Hyt?nen T, Andr?s J, Pham M, Weisz D, Mascagni F, Usai G, Natali L, Bassil N, Fernandez GE, Lomsadze A, Armour M, Olukolu B, Poorten T, Britton C, Davik J, Ashrafi H, Aiden EL, Borodovsky M, Worthington MG3 (Bethesda, Md.)A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. "Hillquist"). G3 (Bethesda). 2023 02 09; 13(2).G3 (Bethesda)2023-02-09T00:00:002023A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. "Hillquist").36658127Contessoto VG, Dudchenko O, Aiden EL, Wolynes PG, Onuchic JN, Di Pierro MNature communicationsInterphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. Nat Commun. 2023 01 19; 14(1):326.Nat Commun2023-01-19T00:00:002023Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues.36683094Karawita AC, Cheng Y, Chew KY, Challagulla A, Kraus R, Mueller RC, Tong MZW, Hulme KD, Bielefeldt-Ohmann H, Steele LE, Wu M, Sng J, Noye E, Bruxner TJ, Au GG, Lowther S, Blommaert J, Suh A, McCauley AJ, Kaur P, Dudchenko O, Aiden E, Fedrigo O, Formenti G, Mountcastle J, Chow W, Martin FJ, Ogeh DN, Thiaud-Nissen F, Howe K, Tracey A, Smith J, Kuo RI, Renfree MB, Kimura T, Sakoda Y, McDougall M, Spencer HG, Pyne M, Tolf C, Waldenstr?m J, Jarvis ED, Baker ML, Burt DW, Short KRGenome biologyThe swan genome and transcriptome, it is not all black and white. Genome Biol. 2023 Jan 23; 24(1):13.Genome Biol2023-01-23T00:00:002023The swan genome and transcriptome, it is not all black and white.Authorship 1063689836747621Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden ELbioRxiv : the preprint server for biologyThe Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology. bioRxiv. 2023 Jan 27.bioRxiv2023-01-27T00:00:002023The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology.true1Assistant ProfessorAssistant ProfessorAuthorship 1063955736792983Hassan SU, Chua EG, Paz EA, Tay CY, Greeff JC, Palmer DG, Dudchenko O, Aiden EL, Martin GB, Kaur PBMC genomicsChromosome-length genome assembly of Teladorsagia circumcincta - a globally important helminth parasite in livestock. BMC Genomics. 2023 Feb 15; 24(1):74.BMC Genomics2023-02-15T00:00:002023Chromosome-length genome assembly of Teladorsagia circumcincta - a globally important helminth parasite in livestock.Authorship 10642598Authorship 10643201136824347Lamb S, Taylor AM, Hughes TA, McMillan BR, Larsen RT, Khan R, Weisz D, Dudchenko O, Aiden EL, Edelman NB, Frandsen PBGigaByte (Hong Kong, China)De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome. GigaByte. 2021; 2021:gigabyte34.GigaByte2021-11-22T00:00:002021De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome.36807678Tolman ER, Beatty CD, Bush J, Kohli M, Moreno CM, Ware JL, Weber KS, Khan R, Maheshwari C, Weisz D, Dudchenko O, Aiden EL, Frandsen PBGenome biology and evolutionA Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly. Genome Biol Evol. 2023 03 03; 15(3).Genome Biol Evol2023-03-03T00:00:002023A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly.Authorship 1066180336941345Jones BM, Rubin BER, Dudchenko O, Kingwell CJ, Traniello IM, Wang ZY, Kapheim KM, Wyman ES, Adastra PA, Liu W, Parsons LR, Jackson SR, Goodwin K, Davidson SM, McBride MJ, Webb AE, Omufwoko KS, Van Dorp N, Ot?rola MF, Pham M, Omer AD, Weisz D, Schraiber J, Villanea F, Wcislo WT, Paxton RJ, Hunt BG, Aiden EL, Kocher SDNature ecology & evolutionConvergent and complementary selection shaped gains and losses of eusociality in sweat bees. Nat Ecol Evol. 2023 04; 7(4):557-569.Nat Ecol Evol2023-03-20T00:00:002023Convergent and complementary selection shaped gains and losses of eusociality in sweat bees.Authorship 1067511836994871Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden ELGigaScienceThe Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. 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Chromosome Res. 2023 04 12; 31(2):13.Chromosome Res2023-04-12T00:00:002023Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity.true1Associate ProfessorAssociate Professortrue1Postdoc Fellows and AssociatesPostdoc Fellows and AssociatesAuthorship 107296713Authorship 1073974737280210Harris HL, Gu H, Olshansky M, Wang A, Farabella I, Eliaz Y, Kalluchi A, Krishna A, Jacobs M, Cauer G, Pham M, Rao SSP, Dudchenko O, Omer A, Mohajeri K, Kim S, Nichols MH, Davis ES, Gkountaroulis D, Udupa D, Aiden AP, Corces VG, Phanstiel DH, Noble WS, Nir G, Di Pierro M, Seo JS, Talkowski ME, Aiden EL, Rowley MJNature communicationsChromatin alternates between A and B compartments at kilobase scale for subgenic organization. Nat Commun. 2023 06 06; 14(1):3303.Nat Commun2023-06-06T00:00:002023Chromatin alternates between A and B compartments at kilobase scale for subgenic organization.37249392Kliver S, Houck ML, Perelman PL, Totikov A, Tomarovsky A, Dudchenko O, Omer AD, Colaric Z, Weisz D, Aiden EL, Chan S, Hastie A, Komissarov A, Ryder OA, Graphodatsky A, Johnson WE, Maldonado JE, Pukazhenthi BS, Marinari PE, Wildt DE, Koepfli KPThe Journal of heredityChromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes). J Hered. 2023 08 23; 114(5):539-548.J Hered2023-08-23T00:00:002023Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes).true1InstructorInstructortrue1Assistant ProfessorAssistant ProfessorAuthorship 107552340Authorship 10757311637497741Hu H, Wang P, Angessa TT, Zhang XQ, Chalmers KJ, Zhou G, Hill CB, Jia Y, Simpson C, Fuller J, Saxena A, Al Shamaileh H, Iqbal M, Chapman B, Kaur P, Dudchenko O, Aiden EL, Keeble-Gagnere G, Westcott S, Leah D, Tibbits JF, Waugh R, Langridge P, Varshney R, He T, Li CPlant biotechnology journalGenomic signatures of barley breeding for environmental adaptation to the new continents. 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Res Sq. 2023 Jul 19.Res Sq2023-07-19T00:00:002023The ENCODE Uniform Analysis Pipelines.Authorship 10840531038032990Adastra PA, Durand NC, Mitra N, Pulido SG, Mahajan R, Blackburn A, Colaric ZL, Theisen JWM, Weisz D, Dudchenko O, Gnirke A, Rao SSP, Kaur P, Aiden EL, Aiden APPloS oneA rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing. PLoS One. 2023; 18(11):e0294283.PLoS One2023-11-30T00:00:002023A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing.Authorship 1086605838190231Bush J, Webster C, Wegrzyn J, Simon C, Wilcox E, Khan R, Weisz D, Dudchenko O, Aiden EL, Frandsen PGenome biology and evolutionChromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula. Genome Biol Evol. 2024 Jan 05; 16(1).Genome Biol Evol2024-01-05T00:00:002024Chromosome-Level Genome Assembly and Annotation of a Periodical Cicada Species: Magicicada septendecula.