CHAO CHENG to Transcription Factors
This is a "connection" page, showing publications CHAO CHENG has written about Transcription Factors.
Connection Strength
2.233
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DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data. Nucleic Acids Res. 2014 Jan; 42(Database issue):D178-83.
Score: 0.167
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REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer. BMC Genomics. 2013 Jul 26; 14:504.
Score: 0.163
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Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs. PLoS Comput Biol. 2013; 9(7):e1003132.
Score: 0.163
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Understanding transcriptional regulation by integrative analysis of transcription factor binding data. Genome Res. 2012 Sep; 22(9):1658-67.
Score: 0.153
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Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors. Genome Biol. 2011 Nov 07; 12(11):R111.
Score: 0.145
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TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles. Bioinformatics. 2011 Dec 01; 27(23):3221-7.
Score: 0.144
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Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells. Nucleic Acids Res. 2012 Jan; 40(2):553-68.
Score: 0.143
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Systematic identification of transcription factors associated with patient survival in cancers. BMC Genomics. 2009 May 15; 10:225.
Score: 0.122
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Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics. 2008 Mar 03; 9:116.
Score: 0.112
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Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics. 2007 Nov 16; 8:452.
Score: 0.110
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Cloning and characterization of a novel human transcription factor AP-2 beta like gene (TFAP2BL1). Int J Biochem Cell Biol. 2002 Jan; 34(1):78-86.
Score: 0.073
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Intestinal stem cell overproliferation resulting from inactivation of the APC tumor suppressor requires the transcription cofactors Earthbound and Erect wing. PLoS Genet. 2017 Jul; 13(7):e1006870.
Score: 0.054
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Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data. BMC Genomics. 2017 01 10; 18(1):61.
Score: 0.052
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Complex Patterns of Association between Pleiotropy and Transcription Factor Evolution. Genome Biol Evol. 2016 10 23; 8(10):3159-3170.
Score: 0.051
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Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer. PLoS Comput Biol. 2015 May; 11(5):e1004269.
Score: 0.046
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Loregic: a method to characterize the cooperative logic of regulatory factors. PLoS Comput Biol. 2015 Apr; 11(4):e1004132.
Score: 0.046
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p53 and ?Np63a Coregulate the Transcriptional and Cellular Response to TGF? and BMP Signals. Mol Cancer Res. 2015 Apr; 13(4):732-42.
Score: 0.045
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Comparative analysis of regulatory information and circuits across distant species. Nature. 2014 Aug 28; 512(7515):453-6.
Score: 0.044
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Effect of estrogen receptor a binding on functional DNA methylation in breast cancer. Epigenetics. 2014 Apr; 9(4):523-32.
Score: 0.042
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Identification of yeast cell cycle regulated genes based on genomic features. BMC Syst Biol. 2013 Jul 29; 7:70.
Score: 0.041
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Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol. 2012 Sep 26; 13(9):R48.
Score: 0.038
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An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 06; 489(7414):57-74.
Score: 0.038
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Architecture of the human regulatory network derived from ENCODE data. Nature. 2012 Sep 06; 489(7414):91-100.
Score: 0.038
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Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. PLoS Comput Biol. 2011 Nov; 7(11):e1002190.
Score: 0.036
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Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Res. 2011 Feb; 21(2):245-54.
Score: 0.034
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Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9. PLoS Genet. 2008 Jan; 4(1):e13.
Score: 0.028
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Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics. 2007 Jul 06; 8:219.
Score: 0.027
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Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nat Genet. 2017 Oct; 49(10):1428-1436.
Score: 0.014
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The histone methyltransferase activity of MLL1 is dispensable for hematopoiesis and leukemogenesis. Cell Rep. 2014 May 22; 7(4):1239-47.
Score: 0.011
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Discovering chromatin motifs using FAIRE sequencing and the human diploid genome. BMC Genomics. 2013 May 08; 14:310.
Score: 0.010
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A comprehensive nuclear receptor network for breast cancer cells. Cell Rep. 2013 Feb 21; 3(2):538-51.
Score: 0.010
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A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24; 471(7339):527-31.
Score: 0.009
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Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 2011 Feb; 21(2):276-85.
Score: 0.009
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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87.
Score: 0.009
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Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant. Nucleic Acids Res. 2010 Jan; 38(1):143-58.
Score: 0.008