CHAO CHENG to Algorithms
This is a "connection" page, showing publications CHAO CHENG has written about Algorithms.
Connection Strength
1.026
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Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics. 2007 Nov 16; 8:452.
Score: 0.134
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MARD: a new method to detect differential gene expression in treatment-control time courses. Bioinformatics. 2006 Nov 01; 22(21):2650-7.
Score: 0.123
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BioMethyl: an R package for biological interpretation of DNA methylation data. Bioinformatics. 2019 10 01; 35(19):3635-3641.
Score: 0.077
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Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PLoS Comput Biol. 2017 01; 13(1):e1005340.
Score: 0.063
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Application of pharmacologically induced transcriptomic profiles to interrogate PI3K-Akt-mTOR pathway activity associated with cancer patient prognosis. Oncotarget. 2016 Dec 20; 7(51):84142-84154.
Score: 0.063
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iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data. BMC Genomics. 2016 08 12; 17(1):632.
Score: 0.062
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Integrative Genomic Analyses Yield Cell-Cycle Regulatory Programs with Prognostic Value. Mol Cancer Res. 2016 Apr; 14(4):332-43.
Score: 0.059
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An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome. Genome Biol. 2015 Mar 31; 16:63.
Score: 0.056
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Integrative analysis of survival-associated gene sets in breast cancer. BMC Med Genomics. 2015 Mar 12; 8:11.
Score: 0.056
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DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data. Nucleic Acids Res. 2014 Jan; 42(Database issue):D178-83.
Score: 0.051
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REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer. BMC Genomics. 2013 Jul 26; 14:504.
Score: 0.050
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Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors. Genome Biol. 2011 Nov 07; 12(11):R111.
Score: 0.044
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A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. Genome Biol. 2011; 12(2):R15.
Score: 0.042
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mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. Genome Biol. 2009; 10(9):R90.
Score: 0.038
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Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics. 2008 Mar 03; 9:116.
Score: 0.034
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Loregic: a method to characterize the cooperative logic of regulatory factors. PLoS Comput Biol. 2015 Apr; 11(4):e1004132.
Score: 0.014
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Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders. Pac Symp Biocomput. 2015; 132-43.
Score: 0.014
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OrthoClust: an orthology-based network framework for clustering data across multiple species. Genome Biol. 2014 Aug 28; 15(8):R100.
Score: 0.013
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Machine learning and genome annotation: a match meant to be? Genome Biol. 2013 May 29; 14(5):205.
Score: 0.012
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Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 2011 Feb; 21(2):276-85.
Score: 0.010
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A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays. BMC Bioinformatics. 2008 Apr 14; 9:194.
Score: 0.009