STEVEN LUDTKE to Models, Molecular
This is a "connection" page, showing publications STEVEN LUDTKE has written about Models, Molecular.
Connection Strength
2.225
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The 2010 cryo-EM modeling challenge. Biopolymers. 2012 Sep; 97(9):651-4.
Score: 0.314
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3-D structures of macromolecules using single-particle analysis in EMAN. Methods Mol Biol. 2010; 673:157-73.
Score: 0.261
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High resolution single particle refinement in EMAN2.1. Methods. 2016 05 01; 100:25-34.
Score: 0.100
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Cross-neutralizing human anti-poliovirus antibodies bind the recognition site for cellular receptor. Proc Natl Acad Sci U S A. 2013 Dec 10; 110(50):20242-7.
Score: 0.086
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Single-particle cryo-EM of calcium release channels: structural validation. Curr Opin Struct Biol. 2013 Oct; 23(5):755-62.
Score: 0.083
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Cryo-EM structure of a molluscan hemocyanin suggests its allosteric mechanism. Structure. 2013 Apr 02; 21(4):604-13.
Score: 0.082
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Constructing and validating initial Ca models from subnanometer resolution density maps with pathwalking. Structure. 2012 Mar 07; 20(3):450-63.
Score: 0.076
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Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Pac Symp Biocomput. 2011; 369-73.
Score: 0.070
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Model of human low-density lipoprotein and bound receptor based on cryoEM. Proc Natl Acad Sci U S A. 2010 Jan 19; 107(3):1059-64.
Score: 0.065
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Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A. 2008 Jul 15; 105(28):9610-5.
Score: 0.059
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De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure. 2008 Mar; 16(3):441-8.
Score: 0.057
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An expanded conformation of single-ring GroEL-GroES complex encapsulates an 86 kDa substrate. Structure. 2006 Nov; 14(11):1711-22.
Score: 0.052
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Electron cryomicroscopy of single particles at subnanometer resolution. Curr Opin Struct Biol. 2005 Oct; 15(5):571-7.
Score: 0.049
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Structure of Ca2+ release channel at 14 A resolution. J Mol Biol. 2005 Jan 21; 345(3):427-31.
Score: 0.046
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Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis. Structure. 2004 Feb; 12(2):185-91.
Score: 0.043
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A 11.5 A single particle reconstruction of GroEL using EMAN. J Mol Biol. 2001 Nov 23; 314(2):253-62.
Score: 0.037
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In situ structure of the AcrAB-TolC efflux pump at subnanometer resolution. Structure. 2022 01 06; 30(1):107-113.e3.
Score: 0.037
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Bridging the information gap: computational tools for intermediate resolution structure interpretation. J Mol Biol. 2001 May 18; 308(5):1033-44.
Score: 0.036
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EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol. 1999 Dec 01; 128(1):82-97.
Score: 0.032
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Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nat Struct Mol Biol. 2019 12; 26(12):1094-1105.
Score: 0.032
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Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating. Cell Res. 2018 12; 28(12):1158-1170.
Score: 0.030
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Integrative structure and functional anatomy of a nuclear pore complex. Nature. 2018 03 22; 555(7697):475-482.
Score: 0.029
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Structure of the 30?kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach. Structure. 2018 03 06; 26(3):490-498.e3.
Score: 0.029
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Structural and Functional Impacts of ER Coactivator Sequential Recruitment. Mol Cell. 2017 Sep 07; 67(5):733-743.e4.
Score: 0.028
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A Near-Atomic Structure of the Dark Apoptosome Provides Insight into Assembly and Activation. Structure. 2017 01 03; 25(1):40-52.
Score: 0.026
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De Novo modeling in cryo-EM density maps with Pathwalking. J Struct Biol. 2016 12; 196(3):289-298.
Score: 0.026
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Direct Measurement of the Structure of Reconstituted High-Density Lipoproteins by Cryo-EM. Biophys J. 2016 Feb 23; 110(4):810-6.
Score: 0.025
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EMDataBank unified data resource for 3DEM. Nucleic Acids Res. 2016 Jan 04; 44(D1):D396-403.
Score: 0.025
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Gating machinery of InsP3R channels revealed by electron cryomicroscopy. Nature. 2015 Nov 19; 527(7578):336-41.
Score: 0.024
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An atomic model of brome mosaic virus using direct electron detection and real-space optimization. Nat Commun. 2014 Sep 04; 5:4808.
Score: 0.023
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Structure of the SecY channel during initiation of protein translocation. Nature. 2014 Feb 06; 506(7486):102-6.
Score: 0.021
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Details of ssDNA annealing revealed by an HSV-1 ICP8-ssDNA binary complex. Nucleic Acids Res. 2013 Jun; 41(11):5927-37.
Score: 0.021
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The molecular architecture of the eukaryotic chaperonin TRiC/CCT. Structure. 2012 May 09; 20(5):814-25.
Score: 0.019
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Outcome of the first electron microscopy validation task force meeting. Structure. 2012 Feb 08; 20(2):205-14.
Score: 0.019
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Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle. EMBO J. 2012 Feb 01; 31(3):720-30.
Score: 0.019
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The holo-apoptosome: activation of procaspase-9 and interactions with caspase-3. Structure. 2011 Aug 10; 19(8):1084-96.
Score: 0.018
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Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy. J Am Chem Soc. 2010 Nov 24; 132(46):16352-3.
Score: 0.017
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EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res. 2011 Jan; 39(Database issue):D456-64.
Score: 0.017
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Cryo-EM of macromolecular assemblies at near-atomic resolution. Nat Protoc. 2010 Sep; 5(10):1697-708.
Score: 0.017
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4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proc Natl Acad Sci U S A. 2010 Mar 16; 107(11):4967-72.
Score: 0.017
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Mechanism of folding chamber closure in a group II chaperonin. Nature. 2010 Jan 21; 463(7279):379-83.
Score: 0.016
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Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy. Structure. 2009 May 13; 17(5):749-58.
Score: 0.016
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Interprotofilament interactions between Alzheimer's Abeta1-42 peptides in amyloid fibrils revealed by cryoEM. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4653-8.
Score: 0.015
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Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol. 2008 Jul; 15(7):746-53.
Score: 0.015
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Ribosome binding of a single copy of the SecY complex: implications for protein translocation. Mol Cell. 2007 Dec 28; 28(6):1083-92.
Score: 0.014
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Cryoelectron microscopy structures of rotavirus NSP2-NSP5 and NSP2-RNA complexes: implications for genome replication. J Virol. 2006 Nov; 80(21):10829-35.
Score: 0.013
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Close membrane-membrane proximity induced by Ca(2+)-dependent multivalent binding of synaptotagmin-1 to phospholipids. Nat Struct Mol Biol. 2006 Mar; 13(3):209-17.
Score: 0.012
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Structural analysis of the anaphase-promoting complex reveals multiple active sites and insights into polyubiquitylation. Mol Cell. 2005 Dec 22; 20(6):855-66.
Score: 0.012
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Architecture of the ribosome-channel complex derived from native membranes. J Mol Biol. 2005 Apr 29; 348(2):445-57.
Score: 0.012
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Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer. EMBO J. 2004 Aug 04; 23(15):2963-71.
Score: 0.011
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Mitochondrial ATP synthasome: three-dimensional structure by electron microscopy of the ATP synthase in complex formation with carriers for Pi and ADP/ATP. J Biol Chem. 2004 Jul 23; 279(30):31761-8.
Score: 0.011
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The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain. Proc Natl Acad Sci U S A. 2002 Sep 17; 99(19):12155-60.
Score: 0.010