STEVEN LUDTKE to Cryoelectron Microscopy
This is a "connection" page, showing publications STEVEN LUDTKE has written about Cryoelectron Microscopy.
Connection Strength
7.758
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Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM. Nat Methods. 2021 08; 18(8):930-936.
Score: 0.605
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A complete data processing workflow for cryo-ET and subtomogram averaging. Nat Methods. 2019 11; 16(11):1161-1168.
Score: 0.534
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New software tools in EMAN2 inspired by EMDatabank map challenge. J Struct Biol. 2018 11; 204(2):283-290.
Score: 0.495
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Single-Particle Refinement and Variability Analysis in EMAN2.1. Methods Enzymol. 2016; 579:159-89.
Score: 0.425
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Single-particle cryo-EM of calcium release channels: structural validation. Curr Opin Struct Biol. 2013 Oct; 23(5):755-62.
Score: 0.346
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The 2010 cryo-EM modeling challenge. Biopolymers. 2012 Sep; 97(9):651-4.
Score: 0.326
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Flexible architecture of IP3R1 by Cryo-EM. Structure. 2011 Aug 10; 19(8):1192-9.
Score: 0.303
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Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Pac Symp Biocomput. 2011; 369-73.
Score: 0.291
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Single particle analysis at high resolution. Methods Enzymol. 2010; 482:211-35.
Score: 0.271
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Single-particle electron cryomicroscopy of the ion channels in the excitation-contraction coupling junction. Methods Cell Biol. 2007; 79:407-35.
Score: 0.220
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SPARX, a new environment for Cryo-EM image processing. J Struct Biol. 2007 Jan; 157(1):47-55.
Score: 0.213
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Electron cryomicroscopy of single particles at subnanometer resolution. Curr Opin Struct Biol. 2005 Oct; 15(5):571-7.
Score: 0.202
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Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy. Structure. 2004 Jul; 12(7):1129-36.
Score: 0.185
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Focal pair merging for contrast enhancement of single particles. J Struct Biol. 2003 Oct-Nov; 144(1-2):73-8.
Score: 0.176
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Precision requirements and data compression in CryoEM/CryoET. J Struct Biol. 2022 09; 214(3):107875.
Score: 0.161
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Improvement of cryo-EM maps by density modification. Nat Methods. 2020 09; 17(9):923-927.
Score: 0.142
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EMAN: semiautomated software for high-resolution single-particle reconstructions. J Struct Biol. 1999 Dec 01; 128(1):82-97.
Score: 0.135
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Visualizing Individual RuBisCO and Its Assembly into Carboxysomes in Marine Cyanobacteria by Cryo-Electron Tomography. J Mol Biol. 2018 10 19; 430(21):4156-4167.
Score: 0.123
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De Novo modeling in cryo-EM density maps with Pathwalking. J Struct Biol. 2016 12; 196(3):289-298.
Score: 0.107
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High resolution single particle refinement in EMAN2.1. Methods. 2016 05 01; 100:25-34.
Score: 0.104
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The Electron Microscopy eXchange (EMX) initiative. J Struct Biol. 2016 May; 194(2):156-63.
Score: 0.104
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Direct Measurement of the Structure of Reconstituted High-Density Lipoproteins by Cryo-EM. Biophys J. 2016 Feb 23; 110(4):810-6.
Score: 0.103
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Gating machinery of InsP3R channels revealed by electron cryomicroscopy. Nature. 2015 Nov 19; 527(7578):336-41.
Score: 0.101
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Single particle tomography in EMAN2. J Struct Biol. 2015 Jun; 190(3):279-90.
Score: 0.098
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MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography. J Struct Biol. 2015 Nov; 192(2):146-50.
Score: 0.098
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An atomic model of brome mosaic virus using direct electron detection and real-space optimization. Nat Commun. 2014 Sep 04; 5:4808.
Score: 0.094
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Visualizing virus assembly intermediates inside marine cyanobacteria. Nature. 2013 Oct 31; 502(7473):707-10.
Score: 0.088
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Domain organization of membrane-bound factor VIII. Biopolymers. 2013 Jul; 99(7):448-59.
Score: 0.086
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Validation of cryo-EM structure of IP3R1 channel. Structure. 2013 Jun 04; 21(6):900-9.
Score: 0.086
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EMEN2: an object oriented database and electronic lab notebook. Microsc Microanal. 2013 Feb; 19(1):1-10.
Score: 0.084
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Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy. J Am Chem Soc. 2010 Nov 24; 132(46):16352-3.
Score: 0.072
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EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res. 2011 Jan; 39(Database issue):D456-64.
Score: 0.071
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Cryo-EM of macromolecular assemblies at near-atomic resolution. Nat Protoc. 2010 Sep; 5(10):1697-708.
Score: 0.071
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4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proc Natl Acad Sci U S A. 2010 Mar 16; 107(11):4967-72.
Score: 0.069
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Model of human low-density lipoprotein and bound receptor based on cryoEM. Proc Natl Acad Sci U S A. 2010 Jan 19; 107(3):1059-64.
Score: 0.068
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Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A. 2008 Jul 15; 105(28):9610-5.
Score: 0.061
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An expanded conformation of single-ring GroEL-GroES complex encapsulates an 86 kDa substrate. Structure. 2006 Nov; 14(11):1711-22.
Score: 0.054
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The pore structure of the closed RyR1 channel. Structure. 2005 Aug; 13(8):1203-11.
Score: 0.050
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A 9 angstroms single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope. J Struct Biol. 2004 Aug; 147(2):116-27.
Score: 0.047
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Community recommendations on cryoEM data archiving and validation. IUCrJ. 2024 03 01; 11(Pt 2):140-151.
Score: 0.045
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Automatic particle selection: results of a comparative study. J Struct Biol. 2004 Jan-Feb; 145(1-2):3-14.
Score: 0.045
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HIV-1 Vpu protein forms stable oligomers in aqueous solution via its transmembrane domain self-association. Sci Rep. 2023 09 06; 13(1):14691.
Score: 0.044
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A 11.5 A single particle reconstruction of GroEL using EMAN. J Mol Biol. 2001 Nov 23; 314(2):253-62.
Score: 0.039
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In situ structure of the AcrAB-TolC efflux pump at subnanometer resolution. Structure. 2022 01 06; 30(1):107-113.e3.
Score: 0.038
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Fourier amplitude decay of electron cryomicroscopic images of single particles and effects on structure determination. J Struct Biol. 2001 Jan; 133(1):32-42.
Score: 0.036
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Structural Insights of Transcriptionally Active, Full-Length Androgen Receptor Coactivator Complexes. Mol Cell. 2020 09 03; 79(5):812-823.e4.
Score: 0.035
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Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nat Struct Mol Biol. 2019 12; 26(12):1094-1105.
Score: 0.034
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In situ structure and assembly of the multidrug efflux pump AcrAB-TolC. Nat Commun. 2019 06 14; 10(1):2635.
Score: 0.033
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Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating. Cell Res. 2018 12; 28(12):1158-1170.
Score: 0.031
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Structure of the 30?kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach. Structure. 2018 03 06; 26(3):490-498.e3.
Score: 0.030
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Structural and Functional Impacts of ER Coactivator Sequential Recruitment. Mol Cell. 2017 Sep 07; 67(5):733-743.e4.
Score: 0.029
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A Near-Atomic Structure of the Dark Apoptosome Provides Insight into Assembly and Activation. Structure. 2017 01 03; 25(1):40-52.
Score: 0.027
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Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography. J Struct Biol. 2016 06; 194(3):383-94.
Score: 0.026
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Structure of a biologically active estrogen receptor-coactivator complex on DNA. Mol Cell. 2015 Mar 19; 57(6):1047-1058.
Score: 0.024
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Zernike phase-contrast electron cryotomography applied to marine cyanobacteria infected with cyanophages. Nat Protoc. 2014 Nov; 9(11):2630-42.
Score: 0.024
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Cross-neutralizing human anti-poliovirus antibodies bind the recognition site for cellular receptor. Proc Natl Acad Sci U S A. 2013 Dec 10; 110(50):20242-7.
Score: 0.022
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Structure of the SecY channel during initiation of protein translocation. Nature. 2014 Feb 06; 506(7486):102-6.
Score: 0.022
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TRiC's tricks inhibit huntingtin aggregation. Elife. 2013 Jul 09; 2:e00710.
Score: 0.022
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Human CCT4 and CCT5 chaperonin subunits expressed in Escherichia coli form biologically active homo-oligomers. J Biol Chem. 2013 Jun 14; 288(24):17734-44.
Score: 0.021
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Cryo-EM structure of a molluscan hemocyanin suggests its allosteric mechanism. Structure. 2013 Apr 02; 21(4):604-13.
Score: 0.021
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Constructing and validating initial Ca models from subnanometer resolution density maps with pathwalking. Structure. 2012 Mar 07; 20(3):450-63.
Score: 0.020
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Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle. EMBO J. 2012 Feb 01; 31(3):720-30.
Score: 0.019
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Structure of the Drosophila apoptosome at 6.9?? resolution. Structure. 2011 Jan 12; 19(1):128-40.
Score: 0.018
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Mechanism of folding chamber closure in a group II chaperonin. Nature. 2010 Jan 21; 463(7279):379-83.
Score: 0.017
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Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy. Structure. 2009 May 13; 17(5):749-58.
Score: 0.016
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Interprotofilament interactions between Alzheimer's Abeta1-42 peptides in amyloid fibrils revealed by cryoEM. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4653-8.
Score: 0.016
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Disruption of human plasma high-density lipoproteins by streptococcal serum opacity factor requires labile apolipoprotein A-I. Biochemistry. 2009 Feb 24; 48(7):1481-7.
Score: 0.016
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Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol. 2008 Jul; 15(7):746-53.
Score: 0.015
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Ribosome binding of a single copy of the SecY complex: implications for protein translocation. Mol Cell. 2007 Dec 28; 28(6):1083-92.
Score: 0.015
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Cryoelectron microscopy structures of rotavirus NSP2-NSP5 and NSP2-RNA complexes: implications for genome replication. J Virol. 2006 Nov; 80(21):10829-35.
Score: 0.013
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Structural analysis of the anaphase-promoting complex reveals multiple active sites and insights into polyubiquitylation. Mol Cell. 2005 Dec 22; 20(6):855-66.
Score: 0.013
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Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer. EMBO J. 2004 Aug 04; 23(15):2963-71.
Score: 0.012
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Experimental verification of conformational variation of human fatty acid synthase as predicted by normal mode analysis. Structure. 2004 Feb; 12(2):185-91.
Score: 0.011
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Structure of the type 1 inositol 1,4,5-trisphosphate receptor revealed by electron cryomicroscopy. J Biol Chem. 2003 Jun 13; 278(24):21319-22.
Score: 0.011
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The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain. Proc Natl Acad Sci U S A. 2002 Sep 17; 99(19):12155-60.
Score: 0.010
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Structure of the voltage-gated L-type Ca2+ channel by electron cryomicroscopy. Proc Natl Acad Sci U S A. 2002 Aug 06; 99(16):10370-5.
Score: 0.010
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Quaternary structure of human fatty acid synthase by electron cryomicroscopy. Proc Natl Acad Sci U S A. 2002 Jan 08; 99(1):138-43.
Score: 0.010