YIHANYI HAN0.000000000000000.000000000000003589HAN, YIAssociate Professorprns:coAuthorOfcoauthor ofFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionvivo:hasResearchArearesearch areasvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titlerdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonAuthorship 829836Authorship 132625Authorship 199714Authorship 1613386Authorship 1624631Authorship 162868625576662Han YWCurrent opinion in microbiologyFusobacterium nucleatum: a commensal-turned pathogen. Curr Opin Microbiol. 2015 Feb; 23:141-7.Curr Opin Microbiol2015-01-08T00:00:002015Fusobacterium nucleatum: a commensal-turned pathogen.25653408Nie S, Tian B, Wang X, Pincus DH, Welker M, Gilhuley K, Lu X, Han YW, Tang YWJournal of clinical microbiologyFusobacterium nucleatum subspecies identification by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2015 Apr; 53(4):1399-402.J Clin Microbiol2015-02-04T00:00:002015Fusobacterium nucleatum subspecies identification by matrix-assisted laser desorption ionization-time of flight mass spectrometry.25887218Wang M, Beck CR, English AC, Meng Q, Buhay C, Han Y, Doddapaneni HV, Yu F, Boerwinkle E, Lupski JR, Muzny DM, Gibbs RABMC genomicsPacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations. BMC Genomics. 2015 Mar 19; 16:214.BMC Genomics2015-03-19T00:00:002015PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations.Systems BiologyMD AndersonGORDON BMILLSGORDON B MILLS8620MILLS, GORDON BProfessorAuthorship 841029Authorship 29561620Authorship 3053101725886820English AC, Salerno WJ, Hampton OA, Gonzaga-Jauregui C, Ambreth S, Ritter DI, Beck CR, Davis CF, Dahdouli M, Ma S, Carroll A, Veeraraghavan N, Bruestle J, Drees B, Hastie A, Lam ET, White S, Mishra P, Wang M, Han Y, Zhang F, Stankiewicz P, Wheeler DA, Reid JG, Muzny DM, Rogers J, Sabo A, Worley KC, Lupski JR, Boerwinkle E, Gibbs RABMC genomicsAssessing structural variation in a personal genome-towards a human reference diploid genome. BMC Genomics. 2015 Apr 11; 16:286.BMC Genomics2015-04-11T00:00:002015Assessing structural variation in a personal genome-towards a human reference diploid genome.26051890Ostrowski EA, Shen Y, Tian X, Sucgang R, Jiang H, Qu J, Katoh-Kurasawa M, Brock DA, Dinh C, Lara-Garduno F, Lee SL, Kovar CL, Dinh HH, Korchina V, Jackson L, Patil S, Han Y, Chaboub L, Shaulsky G, Muzny DM, Worley KC, Gibbs RA, Richards S, Kuspa A, Strassmann JE, Queller DCCurrent biology : CBGenomic signatures of cooperation and conflict in the social amoeba. Curr Biol. 2015 Jun 15; 25(12):1661-5.Curr Biol2015-06-04T00:00:002015Genomic signatures of cooperation and conflict in the social amoeba.74Professor10Assistant Professor14Associate Professor42DirectorOne Baylor PlazaHouston, 77030TXAuthorship 3222422626804919Gingras MC, Covington KR, Chang DK, Donehower LA, Gill AJ, Ittmann MM, Creighton CJ, Johns AL, Shinbrot E, Dewal N, Fisher WE, Australian Pancreatic Cancer Genome Initiative, Pilarsky C, Gr?tzmann R, Overman MJ, Jamieson NB, Van Buren G, Drummond J, Walker K, Hampton OA, Xi L, Muzny DM, Doddapaneni H, Lee SL, Bellair M, Hu J, Han Y, Dinh HH, Dahdouli M, Samra JS, Bailey P, Waddell N, Pearson JV, Harliwong I, Wang H, Aust D, Oien KA, Hruban RH, Hodges SE, McElhany A, Saengboonmee C, Duthie FR, Grimmond SM, Biankin AV, Wheeler DA, Gibbs RACell reportsAmpullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation. Cell Rep. 2016 Feb 02; 14(4):907-919.Cell Rep2016-01-21T00:00:002016Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation.22028810Buhimschi CS, Bhandari V, Dulay AT, Nayeri UA, Abdel-Razeq SS, Pettker CM, Thung S, Zhao G, Han YW, Bizzarro M, Buhimschi IAPloS oneProteomics mapping of cord blood identifies haptoglobin "switch-on" pattern as biomarker of early-onset neonatal sepsis in preterm newborns. PLoS One. 2011; 6(10):e26111.PLoS One2011-10-10T00:00:002011Proteomics mapping of cord blood identifies haptoglobin "switch-on" pattern as biomarker of early-onset neonatal sepsis in preterm newborns.22040113Fardini Y, Wang X, T?moin S, Nithianantham S, Lee D, Shoham M, Han YWMolecular microbiologyFusobacterium nucleatum adhesin FadA binds vascular endothelial cadherin and alters endothelial integrity. Mol Microbiol. 2011 Dec; 82(6):1468-80.Mol Microbiol2011-11-15T00:00:002011Fusobacterium nucleatum adhesin FadA binds vascular endothelial cadherin and alters endothelial integrity.18670626Srivatsan A, Han Y, Peng J, Tehranchi AK, Gibbs R, Wang JD, Chen RPLoS geneticsHigh-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet. 2008 Aug 01; 4(8):e1000139.PLoS Genet2008-08-01T00:00:002008High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies.19528327Daines B, Wang H, Li Y, Han Y, Gibbs R, Chen RGeneticsHigh-throughput multiplex sequencing to discover copy number variants in Drosophila. Genetics. 2009 Aug; 182(4):935-41.Genetics2009-06-15T00:00:002009High-throughput multiplex sequencing to discover copy number variants in Drosophila.23437088Wang X, Buhimschi CS, Temoin S, Bhandari V, Han YW, Buhimschi IAPloS oneComparative microbial analysis of paired amniotic fluid and cord blood from pregnancies complicated by preterm birth and early-onset neonatal sepsis. PLoS One. 2013; 8(2):e56131.PLoS One2013-02-20T00:00:002013Comparative microbial analysis of paired amniotic fluid and cord blood from pregnancies complicated by preterm birth and early-onset neonatal sepsis.21177959Daines B, Wang H, Wang L, Li Y, Han Y, Emmert D, Gelbart W, Wang X, Li W, Gibbs R, Chen RGenome researchThe Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Res. 2011 Feb; 21(2):315-24.Genome Res2010-12-22T00:00:002010The Drosophila melanogaster transcriptome by paired-end RNA sequencing.23185243English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RAPloS oneMind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS One. 2012; 7(11):e47768.PLoS One2012-11-21T00:00:002012Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.Authorship 884771728984202Hampton OA, English AC, Wang M, Salerno WJ, Liu Y, Muzny DM, Han Y, Wheeler DA, Worley KC, Lupski JR, Gibbs RABMC genomicsSVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads. BMC Genomics. 2017 Oct 03; 18(Suppl 6):691.BMC Genomics2017-10-03T00:00:002017SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.true1ProfessorProfessortrue1Assistant ProfessorAssistant Professortrue1Assistant ProfessorAssistant Professortrue1Associate ProfessorAssociate Professortrue1ProfessorProfessortrue1Associate ProfessorAssociate ProfessorFRITZSEDLAZECKFRITZ SEDLAZECK14190SEDLAZECK, FRITZAssociate ProfessorD005674Disorders26280.978285Fusobacterium InfectionsD037521Chemicals & Drugs772130.861135Virulence FactorsD018829Chemicals & Drugs45850.938673Adhesins, BacterialD001421Living Beings880.994496Bacteria, AnaerobicD016967Living Beings26350.958279Fusobacterium nucleatumDepartment of MedicineDepartment of Molecular & Human GeneticsHuman Genome Sequencing CenterHuman Genome Sequencing CenterMedicine-Gastroenterology & HepatolMolecular & Human GeneticsBaylor College of MedicineWEIMINBIWEIMIN BI0.000000000000000.00000000000000241BI, WEIMINAssociate ProfessorRUICHENRUI CHEN0.000000000000000.000000000000002178CHEN, RUIProfessorMINGZHOUMING ZHOU0.000000000000000.000000000000004329ZHOU, MINGProfessorDONNAMUZNYDONNA MUZNY0.000000000000000.000000000000003166MUZNY, DONNAAssistant ProfessorJAMESLUPSKIJAMES LUPSKI29.71073630000000-95.396604500000003140LUPSKI, JAMESProfessorYOSHIOYAMAOKAYOSHIO YAMAOKA0.000000000000000.000000000000003531YAMAOKA, YOSHIOProfessorLORRAINEPOTOCKILORRAINE POTOCKI0.000000000000000.000000000000003446POTOCKI, LORRAINEProfessorSANDRADARILEKSANDRA DARILEK0.000000000000000.00000000000000602DARILEK, SANDRAAssociate ProfessorRICHARDGIBBSRICHARD GIBBS0.000000000000000.000000000000003131GIBBS, RICHARDDistinguished Service Professor1.985750.00444641127research areas0.6647340.028461628coauthor of15.20341.7972260similar to1120selected publicationsAuthorship 127281623954158Rubinstein MR, Wang X, Liu W, Hao Y, Cai G, Han YWCell host & microbeFusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/?-catenin signaling via its FadA adhesin. Cell Host Microbe. 2013 Aug 14; 14(2):195-206.Cell Host Microbe2013-08-14T00:00:002013Fusobacterium nucleatum promotes colorectal carcinogenesis by modulating E-cadherin/?-catenin signaling via its FadA adhesin.FANXIAFAN XIA0.000000000000000.000000000000006172XIA, FANAssociate Professortrue1ProfessorProfessorAuthorship 989862432433610Wang L, Qian H, Nian Y, Han Y, Ren Z, Zhang H, Hu L, Prasad BVV, Laganowsky A, Yan N, Zhou MNatureStructure and mechanism of human diacylglycerol O-acyltransferase?1. Nature. 2020 05; 581(7808):329-332.Nature2020-05-13T00:00:002020Structure and mechanism of human diacylglycerol O-acyltransferase?1.true1Associate ProfessorAssociate ProfessorYUEWANGYUE WANG0.000000000000000.000000000000006961WANG, YUEAssistant ProfessorAuthorship 10241111634184813Meng Q, Gao Q, Mehrazarin S, Tangwanichgapong K, Wang Y, Huang Y, Pan Y, Robinson S, Liu Z, Zangiabadi A, Lux R, Papapanou PN, Guo XE, Wang H, Berchowitz LE, Han YWEMBO reportsFusobacterium nucleatum secretes amyloid-like FadA to enhance pathogenicity. EMBO Rep. 2021 07 05; 22(7):e52891.EMBO Rep2021-06-29T00:00:002021Fusobacterium nucleatum secretes amyloid-like FadA to enhance pathogenicity.true1Distinguished Service ProfessorDistinguished Service ProfessorAuthorship 13763Authorship 1039943935166336Menon VK, Okhuysen PC, Chappell CL, Mahmoud M, Mahmoud M, Meng Q, Doddapaneni H, Vee V, Han Y, Salvi S, Bhamidipati S, Kottapalli K, Weissenberger G, Shen H, Ross MC, Hoffman KL, Cregeen SJ, Muzny DM, Metcalf GA, Gibbs RA, Petrosino JF, Sedlazeck FJGigaScienceFully resolved assembly of Cryptosporidium parvum. Gigascience. 2022 02 15; 11.Gigascience2022-02-15T00:00:002022Fully resolved assembly of Cryptosporidium parvum.Authorship 10469141035640223Harris RA, Raveendran M, Lyfoung DT, Sedlazeck FJ, Mahmoud M, Prall TM, Karl JA, Doddapaneni H, Meng Q, Han Y, Muzny D, Wiseman RW, O'Connor DH, Rogers JGigaScienceConstruction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus. Gigascience. 2022 05 28; 11.Gigascience2022-05-28T00:00:002022Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus.true1Associate ProfessorAssociate ProfessorAuthorship 1054395436413126Frank ML, Lu K, Erdogan C, Han Y, Hu J, Wang T, Heymach JV, Zhang J, Reuben AClinical cancer research : an official journal of the American Association for Cancer ResearchT-Cell Receptor Repertoire Sequencing in the Era of Cancer Immunotherapy. Clin Cancer Res. 2023 03 14; 29(6):994-1008.Clin Cancer Res2023-03-14T00:00:002023T-Cell Receptor Repertoire Sequencing in the Era of Cancer Immunotherapy.true1ProfessorProfessortrue1ProfessorProfessorDepartment of Biochemistry and Molecular PharmacologyBiochemistry & Mol Pharmacologytrue1Associate ProfessorAssociate Professor2Associate ProfessorAssociate Professortrue1ProfessorProfessorAuthorship 23672Authorship 836265