OLIVIER LICHTARGE to Proteins
This is a "connection" page, showing publications OLIVIER LICHTARGE has written about Proteins.
Connection Strength
6.223
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Prediction and redesign of protein-protein interactions. Prog Biophys Mol Biol. 2014 Nov-Dec; 116(2-3):194-202.
Score: 0.313
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Function prediction from networks of local evolutionary similarity in protein structure. BMC Bioinformatics. 2013; 14 Suppl 3:S6.
Score: 0.288
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ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape. Bioinformatics. 2012 Aug 15; 28(16):2186-8.
Score: 0.274
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The use of evolutionary patterns in protein annotation. Curr Opin Struct Biol. 2012 Jun; 22(3):316-25.
Score: 0.273
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Evolutionary trace for prediction and redesign of protein functional sites. Methods Mol Biol. 2012; 819:29-42.
Score: 0.265
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Protein function prediction: towards integration of similarity metrics. Curr Opin Struct Biol. 2011 Apr; 21(2):180-8.
Score: 0.250
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Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities. PLoS One. 2010 Dec 13; 5(12):e14286.
Score: 0.247
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Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation. Protein Sci. 2010 Jul; 19(7):1296-311.
Score: 0.239
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Evolution: a guide to perturb protein function and networks. Curr Opin Struct Biol. 2010 Jun; 20(3):351-9.
Score: 0.236
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Evolutionary trace annotation of protein function in the structural proteome. J Mol Biol. 2010 Mar 12; 396(5):1451-73.
Score: 0.231
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Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates. Bioinformatics. 2009 Jun 01; 25(11):1426-7.
Score: 0.219
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Background frequencies for residue variability estimates: BLOSUM revisited. BMC Bioinformatics. 2007 Dec 27; 8:488.
Score: 0.201
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Graph sharpening plus graph integration: a synergy that improves protein functional classification. Bioinformatics. 2007 Dec 01; 23(23):3217-24.
Score: 0.199
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On itinerant water molecules and detectability of protein-protein interfaces through comparative analysis of homologues. J Mol Biol. 2007 Jun 01; 369(2):584-95.
Score: 0.191
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Rank information: a structure-independent measure of evolutionary trace quality that improves identification of protein functional sites. Proteins. 2006 Oct 01; 65(1):111-23.
Score: 0.184
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ET viewer: an application for predicting and visualizing functional sites in protein structures. Bioinformatics. 2006 Aug 15; 22(16):2049-50.
Score: 0.181
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Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity. Protein Sci. 2006 Jun; 15(6):1530-6.
Score: 0.179
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Evolutionary trace report_maker: a new type of service for comparative analysis of proteins. Bioinformatics. 2006 Jul 01; 22(13):1656-7.
Score: 0.179
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Evolutionary and structural feedback on selection of sequences for comparative analysis of proteins. Proteins. 2006 Apr 01; 63(1):87-99.
Score: 0.178
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Character and evolution of protein-protein interfaces. Phys Biol. 2005 Jun; 2(2):S36-43.
Score: 0.168
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An evolution based classifier for prediction of protein interfaces without using protein structures. Bioinformatics. 2005 May 15; 21(10):2496-501.
Score: 0.165
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Combining inference from evolution and geometric probability in protein structure evaluation. J Mol Biol. 2003 Aug 01; 331(1):263-79.
Score: 0.148
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An accurate, sensitive, and scalable method to identify functional sites in protein structures. J Mol Biol. 2003 Feb 07; 326(1):255-61.
Score: 0.143
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Accurate and scalable identification of functional sites by evolutionary tracing. J Struct Funct Genomics. 2003; 4(2-3):159-66.
Score: 0.142
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Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J Mol Biol. 2002 Feb 08; 316(1):139-54.
Score: 0.134
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Getting past appearances: the many-fold consequences of remote homology. Nat Struct Biol. 2001 Nov; 8(11):918-20.
Score: 0.131
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An Evolutionary Trace method defines functionally important bases and sites common to RNA families. PLoS Comput Biol. 2020 03; 16(3):e1007583.
Score: 0.117
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Identification of functional surfaces of the zinc binding domains of intracellular receptors. J Mol Biol. 1997 Dec 05; 274(3):325-37.
Score: 0.100
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An evolutionary trace method defines binding surfaces common to protein families. J Mol Biol. 1996 Mar 29; 257(2):342-58.
Score: 0.089
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Differential effects of collagen prolyl 3-hydroxylation on skeletal tissues. PLoS Genet. 2014 Jan; 10(1):e1004121.
Score: 0.077
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Accounting for epistatic interactions improves the functional analysis of protein structures. Bioinformatics. 2013 Nov 01; 29(21):2714-21.
Score: 0.075
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A large-scale evaluation of computational protein function prediction. Nat Methods. 2013 Mar; 10(3):221-7.
Score: 0.071
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De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features. PLoS One. 2008 May 07; 3(5):e2136.
Score: 0.052
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The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs. J Comput Biol. 2007 Jul-Aug; 14(6):791-816.
Score: 0.049
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Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction. J Bioinform Comput Biol. 2007 Apr; 5(2a):353-82.
Score: 0.048
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Composite motifs integrating multiple protein structures increase sensitivity for function prediction. Comput Syst Bioinformatics Conf. 2007; 6:343-55.
Score: 0.047
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Rapid detection of similarity in protein structure and function through contact metric distances. Nucleic Acids Res. 2006; 34(22):e152.
Score: 0.047
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Algorithms for structural comparison and statistical analysis of 3D protein motifs. Pac Symp Biocomput. 2005; 334-45.
Score: 0.041
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A family of evolution-entropy hybrid methods for ranking protein residues by importance. J Mol Biol. 2004 Mar 05; 336(5):1265-82.
Score: 0.039
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The structure of proteins and their binding sites: NMR and artificial intelligence. Prog Clin Biol Res. 1989; 289:145-56.
Score: 0.013