OLIVIER LICHTARGE to Algorithms
This is a "connection" page, showing publications OLIVIER LICHTARGE has written about Algorithms.
Connection Strength
2.256
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Multimodal network diffusion predicts future disease-gene-chemical associations. Bioinformatics. 2019 05 01; 35(9):1536-1543.
Score: 0.388
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Background frequencies for residue variability estimates: BLOSUM revisited. BMC Bioinformatics. 2007 Dec 27; 8:488.
Score: 0.177
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Graph sharpening plus graph integration: a synergy that improves protein functional classification. Bioinformatics. 2007 Dec 01; 23(23):3217-24.
Score: 0.175
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A structure and evolution-guided Monte Carlo sequence selection strategy for multiple alignment-based analysis of proteins. Bioinformatics. 2006 Jan 15; 22(2):149-56.
Score: 0.153
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An evolution based classifier for prediction of protein interfaces without using protein structures. Bioinformatics. 2005 May 15; 21(10):2496-501.
Score: 0.145
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Graph-based information diffusion method for prioritizing functionally related genes in protein-protein interaction networks. Pac Symp Biocomput. 2020; 25:439-450.
Score: 0.102
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Objective assessment of the evolutionary action equation for the fitness effect of missense mutations across CAGI-blinded contests. Hum Mutat. 2017 09; 38(9):1072-1084.
Score: 0.085
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DISCOVERY OF FUNCTIONAL AND DISEASE PATHWAYS BY COMMUNITY DETECTION IN PROTEIN-PROTEIN INTERACTION NETWORKS. Pac Symp Biocomput. 2017; 22:336-347.
Score: 0.083
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Intramolecular allosteric communication in dopamine D2 receptor revealed by evolutionary amino acid covariation. Proc Natl Acad Sci U S A. 2016 Mar 29; 113(13):3539-44.
Score: 0.078
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COMPUTING THERAPY FOR PRECISION MEDICINE: COLLABORATIVE FILTERING INTEGRATES AND PREDICTS MULTI-ENTITY INTERACTIONS. Pac Symp Biocomput. 2016; 21:21-32.
Score: 0.077
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A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness. Genome Res. 2014 Dec; 24(12):2050-8.
Score: 0.070
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Accounting for epistatic interactions improves the functional analysis of protein structures. Bioinformatics. 2013 Nov 01; 29(21):2714-21.
Score: 0.066
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Function prediction from networks of local evolutionary similarity in protein structure. BMC Bioinformatics. 2013; 14 Suppl 3:S6.
Score: 0.063
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Accurate protein structure annotation through competitive diffusion of enzymatic functions over a network of local evolutionary similarities. PLoS One. 2010 Dec 13; 5(12):e14286.
Score: 0.054
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Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation. Protein Sci. 2010 Jul; 19(7):1296-311.
Score: 0.053
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Evolutionary trace annotation of protein function in the structural proteome. J Mol Biol. 2010 Mar 12; 396(5):1451-73.
Score: 0.051
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De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features. PLoS One. 2008 May 07; 3(5):e2136.
Score: 0.045
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The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs. J Comput Biol. 2007 Jul-Aug; 14(6):791-816.
Score: 0.043
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Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction. J Bioinform Comput Biol. 2007 Apr; 5(2a):353-82.
Score: 0.042
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Rapid detection of similarity in protein structure and function through contact metric distances. Nucleic Acids Res. 2006; 34(22):e152.
Score: 0.041
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Rank information: a structure-independent measure of evolutionary trace quality that improves identification of protein functional sites. Proteins. 2006 Oct 01; 65(1):111-23.
Score: 0.041
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Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity. Protein Sci. 2006 Jun; 15(6):1530-6.
Score: 0.039
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Evolutionary trace report_maker: a new type of service for comparative analysis of proteins. Bioinformatics. 2006 Jul 01; 22(13):1656-7.
Score: 0.039
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Assessing the predicted impact of single amino acid substitutions in calmodulin for CAGI6 challenges. Hum Genet. 2025 Mar; 144(2-3):113-125.
Score: 0.036
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Assessing predictions on fitness effects of missense variants in HMBS in CAGI6. Hum Genet. 2025 Mar; 144(2-3):173-189.
Score: 0.035
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Assessing predictions on fitness effects of missense variants in calmodulin. Hum Mutat. 2019 09; 40(9):1463-1473.
Score: 0.025
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Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge. Hum Mutat. 2019 09; 40(9):1392-1399.
Score: 0.025
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A large-scale evaluation of computational protein function prediction. Nat Methods. 2013 Mar; 10(3):221-7.
Score: 0.016
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Cavity-aware motifs reduce false positives in protein function prediction. Comput Syst Bioinformatics Conf. 2006; 311-23.
Score: 0.010