ANDREASTOLIASANDREAS TOLIAS0.000000000000000.000000000000001062TOLIAS, ANDREASProfessorprns:coAuthorOfcoauthor ofprns:endDateend dateFaculty Rankprns:fullNamefull nameprns:grantAwardedBygrant awarded byprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:principalInvestigatorNameprincipal investigator nameprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:startDatestart dateprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provinceAgreementvivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionGrantvivo:hasResearchArearesearch areasvivo:hasResearcherRoleresearch activitiesvivo:hrJobTitleHR job titleInformation Resourcevivo:linkAnchorTextlink anchor textvivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleResearcher Rolevivo:researcherRoleOfresearcher role ofRolevivo:roleContributesTocontributes tovivo:sponsorAwardIdsponsor award idURLLinkvivo:webpagewebpagerdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPerson25374359Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias ASNeuronPupil fluctuations track fast switching of cortical states during quiet wakefulness. Neuron. 2014 Oct 22; 84(2):355-62.Neuron2014-10-22T00:00:002014Pupil fluctuations track fast switching of cortical states during quiet wakefulness.Authorship 783775Authorship 853215Authorship 988701Authorship 119044FABIANSINZFABIAN SINZ8331SINZ, FABIANAdjunct Assistant ProfessorAuthorship 162804425826696Yatsenko D, Josic K, Ecker AS, Froudarakis E, Cotton RJ, Tolias ASPLoS computational biologyImproved estimation and interpretation of correlations in neural circuits. PLoS Comput Biol. 2015 Mar; 11(3):e1004083.PLoS Comput Biol2015-03-31T00:00:002015Improved estimation and interpretation of correlations in neural circuits.Authorship 366483Authorship 373103Anesthesiology & PeriOperative MedicineMD AndersonHUI-LINPANHUI-LIN PAN9317PAN, HUI-LINProfessorAuthorship 480564Authorship 523581Authorship 534334One Baylor PlazaHouston, 77030TXAuthorship 281343119671790Moore T, Tolias AS, Schiller PHProceedings of the National Academy of Sciences of the United States of AmericaVisual representations during saccadic eye movements. Proc Natl Acad Sci U S A. 1998 Jul 21; 95(15):8981-4.Proc Natl Acad Sci U S A1998-07-21T00:00:001998Visual representations during saccadic eye movements.26689543Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias ASNature biotechnologyElectrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq. Nat Biotechnol. 2016 Feb; 34(2):199-203.Nat Biotechnol2015-12-21T00:00:002015Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.Authorship 2965413Authorship 2982437Authorship 302240826238064Reddy GD, Cotton RJ, Tolias AS, Saggau PAdvances in experimental medicine and biologyRandom-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging. Adv Exp Med Biol. 2015; 859:455-72.Adv Exp Med Biol2015-01-01T00:00:002015Random-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging.26402600McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DANeuronWaking State: Rapid Variations Modulate Neural and Behavioral Responses. Neuron. 2015 Sep 23; 87(6):1143-1161.Neuron2015-09-23T00:00:002015Waking State: Rapid Variations Modulate Neural and Behavioral Responses.26612957Jiang X, Shen S, Cadwell CR, Berens P, Sinz F, Ecker AS, Patel S, Tolias ASScience (New York, N.Y.)Principles of connectivity among morphologically defined cell types in adult neocortex. Science. 2015 Nov 27; 350(6264):aac9462.Science2015-11-27T00:00:002015Principles of connectivity among morphologically defined cell types in adult neocortex.74Professor10Assistant Professor54Instructor14Associate Professor2Adjunct Assistant Professor3Adjunct Associate Professor47Distinguished Service Professor11606647Tolias AS, Smirnakis SM, Augath MA, Trinath T, Logothetis NKThe Journal of neuroscience : the official journal of the Society for NeuroscienceMotion processing in the macaque: revisited with functional magnetic resonance imaging. J Neurosci. 2001 Nov 01; 21(21):8594-601.J Neurosci2001-11-01T00:00:002001Motion processing in the macaque: revisited with functional magnetic resonance imaging.Authorship 3207604Authorship 3219848Authorship 3227901126843656Ecker AS, Denfield GH, Bethge M, Tolias ASThe Journal of neuroscience : the official journal of the Society for NeuroscienceOn the Structure of Neuronal Population Activity under Fluctuations in Attentional State. J Neurosci. 2016 Feb 03; 36(5):1775-89.J Neurosci2016-02-03T00:00:002016On the Structure of Neuronal Population Activity under Fluctuations in Attentional State.26974951Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KDNature neuroscienceSpike sorting for large, dense electrode arrays. Nat Neurosci. 2016 Apr; 19(4):634-641.Nat Neurosci2016-03-14T00:00:002016Spike sorting for large, dense electrode arrays.27151639Theis L, Berens P, Froudarakis E, Reimer J, Rom?n Ros?n M, Baden T, Euler T, Tolias AS, Bethge MNeuronBenchmarking Spike Rate Inference in Population Calcium Imaging. Neuron. 2016 05 04; 90(3):471-82.Neuron2016-05-04T00:00:002016Benchmarking Spike Rate Inference in Population Calcium Imaging.16835359Tehovnik EJ, Tolias AS, Sultan F, Slocum WM, Logothetis NKJournal of neurophysiologyDirect and indirect activation of cortical neurons by electrical microstimulation. J Neurophysiol. 2006 Aug; 96(2):512-21.J Neurophysiol2006-08-01T00:00:002006Direct and indirect activation of cortical neurons by electrical microstimulation.12546827Kourtzi Z, Tolias AS, Altmann CF, Augath M, Logothetis NKNeuronIntegration of local features into global shapes: monkey and human FMRI studies. Neuron. 2003 Jan 23; 37(2):333-46.Neuron2003-01-23T00:00:002003Integration of local features into global shapes: monkey and human FMRI studies.Authorship 32687813Authorship 326934427608758Denfield GH, Fahey PG, Reimer J, Tolias ASNeuronInvestigating the Limits of Neurovascular Coupling. Neuron. 2016 Sep 07; 91(5):954-956.Neuron2016-09-07T00:00:002016Investigating the Limits of Neurovascular Coupling.27609883Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Berens P, Ecker AS, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Tolias ASScience (New York, N.Y.)Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex". Science. 2016 09 09; 353(6304):1108.Science2016-09-09T00:00:002016Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex".18024083Goense JB, Ku SP, Merkle H, Tolias AS, Logothetis NKNeuroImagefMRI of the temporal lobe of the awake monkey at 7 T. Neuroimage. 2008 Feb 01; 39(3):1081-93.Neuroimage2007-09-29T00:00:002007fMRI of the temporal lobe of the awake monkey at 7 T.15525287Schiller PH, Slocum WM, Carvey C, Tolias ASThe European journal of neuroscienceAre express saccades generated under natural viewing conditions? Eur J Neurosci. 2004 Nov; 20(9):2467-73.Eur J Neurosci2004-11-01T00:00:002004Are express saccades generated under natural viewing conditions?19196233Macke JH, Berens P, Ecker AS, Tolias AS, Bethge MNeural computationGenerating spike trains with specified correlation coefficients. Neural Comput. 2009 Feb; 21(2):397-423.Neural Comput2009-02-01T00:00:002009Generating spike trains with specified correlation coefficients.15787672Meyer C, Tolias A, Platanisiotis D, Stumvoll M, Vlachos L, Mitrakou ADiabetic medicine : a journal of the British Diabetic AssociationIncreased renal glucose metabolism in Type 1 diabetes mellitus. Diabet Med. 2005 Apr; 22(4):453-9.Diabet Med2005-04-01T00:00:002005Increased renal glucose metabolism in Type 1 diabetes mellitus.15902248Smirnakis SM, Brewer AA, Schmid MC, Tolias AS, Sch?z A, Augath M, Inhoffen W, Wandell BA, Logothetis NKNatureLack of long-term cortical reorganization after macaque retinal lesions. Nature. 2005 May 19; 435(7040):300-7.Nature2005-05-19T00:00:002005Lack of long-term cortical reorganization after macaque retinal lesions.20844131Keliris GA, Logothetis NK, Tolias ASThe Journal of neuroscience : the official journal of the Society for NeuroscienceThe role of the primary visual cortex in perceptual suppression of salient visual stimuli. J Neurosci. 2010 Sep 15; 30(37):12353-65.J Neurosci2010-09-15T00:00:002010The role of the primary visual cortex in perceptual suppression of salient visual stimuli.22855811Berens P, Ecker AS, Cotton RJ, Ma WJ, Bethge M, Tolias ASThe Journal of neuroscience : the official journal of the Society for NeuroscienceA fast and simple population code for orientation in primate V1. J Neurosci. 2012 Aug 01; 32(31):10618-26.J Neurosci2012-08-01T00:00:002012A fast and simple population code for orientation in primate V1.17685814Hayashi R, Nishida S, Tolias A, Logothetis NKJournal of visionA method for generating a "purely first-order" dichoptic motion stimulus. J Vis. 2007 Jun 19; 7(8):7.J Vis2007-06-19T00:00:002007A method for generating a "purely first-order" dichoptic motion stimulus.17942615Tolias AS, Ecker AS, Siapas AG, Hoenselaar A, Keliris GA, Logothetis NKJournal of neurophysiologyRecording chronically from the same neurons in awake, behaving primates. J Neurophysiol. 2007 Dec; 98(6):3780-90.J Neurophysiol2007-10-17T00:00:002007Recording chronically from the same neurons in awake, behaving primates.18958246Berens P, Keliris GA, Ecker AS, Logothetis NK, Tolias ASFrontiers in systems neuroscienceComparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex. Front Syst Neurosci. 2008; 2:2.Front Syst Neurosci2008-06-17T00:00:002008Comparing the feature selectivity of the gamma-band of the local field potential and the underlying spiking activity in primate visual cortex.19225593Berens P, Keliris GA, Ecker AS, Logothetis NK, Tolias ASFrontiers in neuroscienceFeature selectivity of the gamma-band of the local field potential in primate primary visual cortex. Front Neurosci. 2008 Dec; 2(2):199-207.Front Neurosci2008-12-15T00:00:002008Feature selectivity of the gamma-band of the local field potential in primate primary visual cortex.Authorship 6527847Authorship 653341927824036Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias ASNature communicationsPupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex. Nat Commun. 2016 11 08; 7:13289.Nat Commun2016-11-08T00:00:002016Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.27990451Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes MLNeurophotonicsPatterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics. Neurophotonics. 2017 Jan; 4(1):011002.Neurophotonics2016-12-06T00:00:002016Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics.28024159Quast KB, Ung K, Froudarakis E, Huang L, Herman I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BRNature neuroscienceDevelopmental broadening of inhibitory sensory maps. Nat Neurosci. 2017 02; 20(2):189-199.Nat Neurosci2016-12-26T00:00:002016Developmental broadening of inhibitory sensory maps.Authorship 6783201021368193Berens P, Ecker AS, Gerwinn S, Tolias AS, Bethge MProceedings of the National Academy of Sciences of the United States of AmericaReassessing optimal neural population codes with neurometric functions. Proc Natl Acad Sci U S A. 2011 Mar 15; 108(11):4423-8.Proc Natl Acad Sci U S A2011-02-28T00:00:002011Reassessing optimal neural population codes with neurometric functions.21757310Sultan F, Augath M, Murayama Y, Tolias AS, Logothetis NMagnetic resonance imagingesfMRI of the upper STS: further evidence for the lack of electrically induced polysynaptic propagation of activity in the neocortex. Magn Reson Imaging. 2011 Dec; 29(10):1374-81.Magn Reson Imaging2011-07-14T00:00:002011esfMRI of the upper STS: further evidence for the lack of electrically induced polysynaptic propagation of activity in the neocortex.Authorship 756635828218900Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cruz-Hern?ndez JC, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu CNature methodsIn vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain. Nat Methods. 2017 Apr; 14(4):388-390.Nat Methods2017-02-20T00:00:002017In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.21521619Ku SP, Tolias AS, Logothetis NK, Goense JNeuronfMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques. Neuron. 2011 Apr 28; 70(2):352-62.Neuron2011-04-28T00:00:002011fMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques.22660480Beauchamp MS, Sun P, Baum SH, Tolias AS, Yoshor DNature neuroscienceElectrocorticography links human temporoparietal junction to visual perception. Nat Neurosci. 2012 Jun 03; 15(7):957-9.Nat Neurosci2012-06-03T00:00:002012Electrocorticography links human temporoparietal junction to visual perception.23527024Subramaniyan M, Ecker AS, Berens P, Tolias ASPloS oneMacaque monkeys perceive the flash lag illusion. PLoS One. 2013; 8(3):e58788.PLoS One2013-03-19T00:00:002013Macaque monkeys perceive the flash lag illusion.9061652Stromeyer CF, Chaparro A, Tolias AS, Kronauer REThe Journal of physiologyColour adaptation modifies the long-wave versus middle-wave cone weights and temporal phases in human luminance (but not red-green) mechanism. J Physiol. 1997 Feb 15; 499 ( Pt 1):227-54.J Physiol1997-02-15T00:00:001997Colour adaptation modifies the long-wave versus middle-wave cone weights and temporal phases in human luminance (but not red-green) mechanism.9622653Tehovnik EJ, Slocum WM, Tolias AS, Schiller PHBrain researchSaccades induced electrically from the dorsomedial frontal cortex: evidence for a head-centered representation. Brain Res. 1998 Jun 08; 795(1-2):287-91.Brain Res1998-06-08T00:00:001998Saccades induced electrically from the dorsomedial frontal cortex: evidence for a head-centered representation.28679385Cadwell CR, Sandberg R, Jiang X, Tolias ASBMC biologyQ&A: using Patch-seq to profile single cells. BMC Biol. 2017 07 06; 15(1):58.BMC Biol2017-07-06T00:00:002017Q&A: using Patch-seq to profile single cells.11301034Tolias AS, Moore T, Smirnakis SM, Tehovnik EJ, Siapas AG, Schiller PHNeuronEye movements modulate visual receptive fields of V4 neurons. Neuron. 2001 Mar; 29(3):757-67.Neuron2001-03-01T00:00:002001Eye movements modulate visual receptive fields of V4 neurons.Authorship 875353415834417Tolias AS, Keliris GA, Smirnakis SM, Logothetis NKNature neuroscienceNeurons in macaque area V4 acquire directional tuning after adaptation to motion stimuli. Nat Neurosci. 2005 May; 8(5):591-3.Nat Neurosci2005-04-17T00:00:002005Neurons in macaque area V4 acquire directional tuning after adaptation to motion stimuli.16364895Tolias AS, Sultan F, Augath M, Oeltermann A, Tehovnik EJ, Schiller PH, Logothetis NKNeuronMapping cortical activity elicited with electrical microstimulation using FMRI in the macaque. Neuron. 2005 Dec 22; 48(6):901-11.Neuron2005-12-22T00:00:002005Mapping cortical activity elicited with electrical microstimulation using FMRI in the macaque.17213863Smirnakis SM, Schmid MC, Weber B, Tolias AS, Augath M, Logothetis NKJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and MetabolismSpatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization. J Cereb Blood Flow Metab. 2007 Jun; 27(6):1248-61.J Cereb Blood Flow Metab2007-01-10T00:00:002007Spatial specificity of BOLD versus cerebral blood volume fMRI for mapping cortical organization.19660667Tehovnik EJ, Slocum WM, Smirnakis SM, Tolias ASProgress in brain researchMicrostimulation of visual cortex to restore vision. Prog Brain Res. 2009; 175:347-75.Prog Brain Res2009-01-01T00:00:002009Microstimulation of visual cortex to restore vision.20110506Ecker AS, Berens P, Keliris GA, Bethge M, Logothetis NK, Tolias ASScience (New York, N.Y.)Decorrelated neuronal firing in cortical microcircuits. Science. 2010 Jan 29; 327(5965):584-7.Science2010-01-29T00:00:002010Decorrelated neuronal firing in cortical microcircuits.21976512Ecker AS, Berens P, Tolias AS, Bethge MThe Journal of neuroscience : the official journal of the Society for NeuroscienceThe effect of noise correlations in populations of diversely tuned neurons. J Neurosci. 2011 Oct 05; 31(40):14272-83.J Neurosci2011-10-05T00:00:002011The effect of noise correlations in populations of diversely tuned neurons.Authorship 883401829189773Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias ASNature protocolsMultimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq. Nat Protoc. 2017 Dec; 12(12):2531-2553.Nat Protoc2017-11-16T00:00:002017Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.JEFFREYMAGEEJEFFREY MAGEE13708MAGEE, JEFFREYProfessortrue1Associate ProfessorAssociate Professortrue1Assistant ProfessorAssistant Professortrue1ProfessorProfessortrue1Distinguished Service ProfessorDistinguished Service ProfessorD009474Anatomy61422850.451917NeuronsD010775Procedures952600.888235Photic StimulationD014795Anatomy39880.922347Visual Pathwaystrue1ProfessorProfessorDAVIDRESSDAVID RESS0.000000000000000.000000000000005518RESS, DAVIDAssociate ProfessorD008959Concepts & Ideas1182290.87766Models, NeurologicalAuthorship 9206275Authorship 92415922Authorship 9373837D014793Anatomy461380.868287Visual Cortex29985411Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias ASNature communicationsAttentional fluctuations induce shared variability in macaque primary visual cortex. Nat Commun. 2018 07 09; 9(1):2654.Nat Commun2018-07-09T00:00:002018Attentional fluctuations induce shared variability in macaque primary visual cortex.29782491Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Rom?n Ros?n M, Theis L, Tolias AS, Bethge MPLoS computational biologyCommunity-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS Comput Biol. 2018 05; 14(5):e1006157.PLoS Comput Biol2018-05-21T00:00:002018Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.30365390Subramaniyan M, Ecker AS, Patel SS, Cotton RJ, Bethge M, Pitkow X, Berens P, Tolias ASJournal of neurophysiologyFaster processing of moving compared with flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion. J Neurophysiol. 2018 11 01; 120(5):2430-2452.J Neurophysiol2018-08-22T00:00:002018Faster processing of moving compared with flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion.ZACHARYPITKOWZACHARY PITKOW0.000000000000000.000000000000005607PITKOW, ZACHARYAdjunct Associate Professor2018-07-31NIHROUKES, MICHAEL L2014-09-30Modular nanophotonic probes for dense neural recording at single-cell resolutionU01NS0905961900-01-01NIHTOLIAS, ANDREAS SAVAS2001-01-01FMRI STUDIES;VISUAL EXPERIENCE AND NEURONAL CHANGESF32EY0070882012-07-31NIHTOLIAS, ANDREAS SAVAS2011-09-30Dissecting the Fabric of the Cerebral CortexDP1OD0083012017-07-31NIHTOLIAS, ANDREAS2011-09-30Dissecting the Fabric of the Cerebral CortexDP1EY0231762015-06-30NIHTOLIAS, ANDREAS2013-07-01ALL-OPTICAL HIGH-THROUGHPUT FUNCTIONAL CONNECTIVITY MAPPING USING ADVANCED MICROSR21EB0162232022-06-30NIHTOLIAS, ANDREAS2017-09-01Deciphering the building blocks of hippocampal circuitsR01MH1095562022-06-30NIHZENG, HONGKUI2017-09-20A comprehensive whole-brain atlas of cell types in the mouseU19MH1148302012-07-31NIHSAGGAU, PETER2009-08-15Optogenetic Tools for in vivo Analysis of Cortical Circuit PlasticityR01DA0285252022-03-31NIHTOLIAS, ANDREAS2017-04-01Probabilistic coding in cortical populationsR01EY0269272018-07-31NIHTOLIAS, ANDREAS2013-09-26A MOLECULAR CODE FOR CONNECTIVITY IN THE NEOCORTEXR01MH1031082014-08-31NIHTOLIAS, ANDREAS2008-09-01Mechanisms of Perceptual Learning in Primary Visual CortexR01EY018847Principal InvestigatorPrincipal InvestigatorCo-Principal InvestigatorPrincipal InvestigatorCo-Principal InvestigatorPrincipal InvestigatorPrincipal InvestigatorCo-Principal InvestigatorPrincipal InvestigatorPrincipal InvestigatorPrincipal InvestigatorDepartment of NeuroscienceDepartment of PediatricsDepartment of Molecular & Human GeneticsMolecular & Human GeneticsNeurosciencePediatrics-NeurologyBaylor College of Medicine7.708360.0063149241research areas4.045070.037805631coauthor of71.748810.586660similar to1199selected publicationsJOANNAJANKOWSKYJOANNA JANKOWSKY0.000000000000000.000000000000001407JANKOWSKY, JOANNAProfessorFABRIZIOGABBIANIFABRIZIO GABBIANI29.71073630000000-95.39660450000000157GABBIANI, FABRIZIOProfessorBENJAMINARENKIELBENJAMIN ARENKIEL29.70508570000000-95.401808700000001776ARENKIEL, BENJAMINProfessorHUDAZOGHBIHUDA ZOGHBI29.71010310000000-95.397396100000002830ZOGHBI, HUDADistinguished Service ProfessorXIAOLONGJIANGXIAOLONG JIANG0.000000000000000.000000000000004116JIANG, XIAOLONGAssociate ProfessorAuthorship 945852531013278Cadena SA, Denfield GH, Walker EY, Gatys LA, Tolias AS, Bethge M, Ecker ASPLoS computational biologyDeep convolutional models improve predictions of macaque V1 responses to natural images. PLoS Comput Biol. 2019 04; 15(4):e1006897.PLoS Comput Biol2019-04-23T00:00:002019Deep convolutional models improve predictions of macaque V1 responses to natural images.Authorship 128588524133414Cotton RJ, Froudarakis E, Storer P, Saggau P, Tolias ASFrontiers in neural circuitsThree-dimensional mapping of microcircuit correlation structure. Front Neural Circuits. 2013; 7:151.Front Neural Circuits2013-10-10T00:00:002013Three-dimensional mapping of microcircuit correlation structure.Authorship 947304931087036Egbert JR, Fahey PG, Reimer J, Owen CM, Evsikov AV, Nikolaev VO, Griesbeck O, Ray RS, Tolias AS, Jaffe LABiology of reproductionFollicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles?. Biol Reprod. 2019 08 01; 101(2):433-444.Biol Reprod2019-08-01T00:00:002019Follicle-stimulating hormone and luteinizing hormone increase Ca2+ in the granulosa cells of mouse ovarian follicles?.Authorship 9529241231358754Liu G, Froudarakis E, Patel JM, Kochukov MY, Pekarek B, Hunt PJ, Patel M, Ung K, Fu CH, Jo J, Lee HK, Tolias AS, Arenkiel BRNature communicationsTarget specific functions of EPL interneurons in olfactory circuits. Nat Commun. 2019 07 29; 10(1):3369.Nat Commun2019-07-29T00:00:002019Target specific functions of EPL interneurons in olfactory circuits.2022-07-31NIHST-PIERRE, FRANCOIS2019-08-15Designing and deploying an expanded color palette of voltage indicators engineered for multiphoton microscopyU01NS113294Co-Principal Investigator31519874Scala F, Kobak D, Shan S, Bernaerts Y, Laturnus S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH, Papadopoulos S, Patel SS, Sandberg R, Berens P, Jiang X, Tolias ASNature communicationsLayer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nat Commun. 2019 09 13; 10(1):4174.Nat Commun2019-09-13T00:00:002019Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas.Authorship 95555012Authorship 955600631525143Froudarakis E, Fahey PG, Reimer J, Smirnakis SM, Tehovnik EJ, Tolias ASAnnual review of vision scienceThe Visual Cortex in Context. Annu Rev Vis Sci. 2019 09 15; 5:317-339.Annu Rev Vis Sci2019-09-15T00:00:002019The Visual Cortex in Context.Authorship 956075331557461Sinz FH, Pitkow X, Reimer J, Bethge M, Tolias ASNeuronEngineering a Less Artificial Intelligence. Neuron. 2019 09 25; 103(6):967-979.Neuron2019-09-25T00:00:002019Engineering a Less Artificial Intelligence.true1ProfessorProfessorAuthorship 96051112Authorship 9605171031685814Scala F, Kobak D, Shan S, Bernaerts Y, Laturnus S, Cadwell CR, Hartmanis L, Froudarakis E, Castro JR, Tan ZH, Papadopoulos S, Patel SS, Sandberg R, Berens P, Jiang X, Tolias ASNature communicationsAuthor Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas. Nat Commun. 2019 Nov 04; 10(1):5075.Nat Commun2019-11-04T00:00:002019Author Correction: Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas.31686023Walker EY, Sinz FH, Cobos E, Muhammad T, Froudarakis E, Fahey PG, Ecker AS, Reimer J, Pitkow X, Tolias ASNature neuroscienceInception loops discover what excites neurons most using deep predictive models. Nat Neurosci. 2019 12; 22(12):2060-2065.Nat Neurosci2019-11-04T00:00:002019Inception loops discover what excites neurons most using deep predictive models.Authorship 974648431873286Walker EY, Cotton RJ, Ma WJ, Tolias ASNature neuroscienceA neural basis of probabilistic computation in visual cortex. Nat Neurosci. 2020 01; 23(1):122-129.Nat Neurosci2019-12-23T00:00:002019A neural basis of probabilistic computation in visual cortex.71Postdoc Fellows and AssociatesPostDocRICHARDDEWELLRICHARD DEWELL0.000000000000000.000000000000006024DEWELL, RICHARDAssistant ProfessorJACOBREIMERJACOB REIMER0.000000000000000.000000000000006089REIMER, JACOBAssistant ProfessorAuthorship 978167432080777Baker C, Froudarakis E, Yatsenko D, Tolias AS, Rosenbaum RJournal of computational neuroscienceInference of synaptic connectivity and external variability in neural microcircuits. J Comput Neurosci. 2020 05; 48(2):123-147.J Comput Neurosci2020-02-21T00:00:002020Inference of synaptic connectivity and external variability in neural microcircuits.true1InstructorInstructorAuthorship 9797971532134385Cadwell CR, Scala F, Fahey PG, Kobak D, Mulherkar S, Sinz FH, Papadopoulos S, Tan ZH, Johnsson P, Hartmanis L, Li S, Cotton RJ, Tolias KF, Sandberg R, Berens P, Jiang X, Tolias ASeLifeCell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex. Elife. 2020 03 05; 9.Elife2020-03-05T00:00:002020Cell type composition and circuit organization of clonally related excitatory neurons in the juvenile mouse neocortex.true1ProfessorProfessorAuthorship 9928472932592656Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OT, Gritton HJ, Romano MF, Gao R, Yu CJ, Tseng HA, Bensussen S, Narayan S, Yang CT, Freifeld L, Siciliano CA, Gupta I, Wang J, Pak N, Yoon YG, Ullmann JFP, Guner-Ataman B, Noamany H, Sheinkopf ZR, Park WM, Asano S, Keating AE, Trimmer JS, Reimer J, Tolias AS, Bear MF, Tye KM, Han X, Ahrens MB, Boyden ESNeuronPrecision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. 2020 08 05; 107(3):470-486.e11.Neuron2020-06-26T00:00:002020Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.Authorship 996966332792531van de Ven GM, Siegelmann HT, Tolias ASNature communicationsBrain-inspired replay for continual learning with artificial neural networks. Nat Commun. 2020 08 13; 11(1):4069.Nat Commun2020-08-13T00:00:002020Brain-inspired replay for continual learning with artificial neural networks.Authorship 9979425432839617Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arma?anzas R, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fi?th R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, G?nt?rk?n O, Hagihara K, Hall VJ, Helmstaedter M, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, K?hnemund M, Larra?aga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Chameh HM, Mohapatra AN, Munguba H, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann RH, Serrano-Saiz E, Staiger JF, Somogyi P, Tam?s G, Tolias AS, Tosches MA, Garc?a MT, Wozny C, Wuttke TV, Liu Y, Yuan J, Zeng H, Lein ENature neuroscienceA community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2020 12; 23(12):1456-1468.Nat Neurosci2020-12-01T00:00:002020A community-based transcriptomics classification and nomenclature of neocortical cell types.http://arenkiel-lab.orgArenkiel Lab WebsiteAuthorship 10028701133058767Moreaux LC, Yatsenko D, Sacher WD, Choi J, Lee C, Kubat NJ, Cotton RJ, Boyden ES, Lin MZ, Tian L, Tolias AS, Poon JKS, Shepard KL, Roukes MLNeuronIntegrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time. Neuron. 2020 10 14; 108(1):66-92.Neuron2020-10-14T00:00:002020Integrated Neurophotonics: Toward Dense Volumetric Interrogation of Brain Circuit Activity-at Depth and in Real Time.Authorship 10049851233184512Scala F, Kobak D, Bernabucci M, Bernaerts Y, Cadwell CR, Castro JR, Hartmanis L, Jiang X, Laturnus S, Miranda E, Mulherkar S, Tan ZH, Yao Z, Zeng H, Sandberg R, Berens P, Tolias ASNaturePhenotypic variation of transcriptomic cell types in mouse motor cortex. Nature. 2021 10; 598(7879):144-150.Nature2020-11-12T00:00:002020Phenotypic variation of transcriptomic cell types in mouse motor cortex.Authorship 10063935633277642Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fi?th R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, G?nt?rk?n O, Hagihara K, Hall VJ, Helmstaedter M, Herculano S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, K?hnemund M, Larra?aga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Moradi Chameh H, Nath A, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann R, Serrano-Saiz E, Steiger JF, Somogyi P, Tam?s G, Tolias AS, Tosches MA, Garc?a MT, Vieira HM, Wozny C, Wuttke TV, Yong L, Yuan J, Zeng H, Lein ENature neurosciencePublisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2021 Apr; 24(4):613.Nat Neurosci2021-04-01T00:00:002021Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types.true1Postdoc Fellows and AssociatesPostdoc Fellows and Associatestrue1Assistant ProfessorAssistant ProfessorAuthorship 10141835433742182Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arma?anzas R, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, DeFelipe J, Dos Santos SE, Dunville K, Feldmeyer D, Fi?th R, Fishell GJ, Foggetti A, Gao X, Ghaderi P, Goriounova NA, G?nt?rk?n O, Hagihara K, Hall VJ, Helmstaedter M, Herculano-Houzel S, Hilscher MM, Hirase H, Hjerling-Leffler J, Hodge R, Huang J, Huda R, Khodosevich K, Kiehn O, Koch H, Kuebler ES, K?hnemund M, Larra?aga P, Lelieveldt B, Louth EL, Lui JH, Mansvelder HD, Marin O, Martinez-Trujillo J, Chameh HM, Mohapatra AN, Munguba H, Nedergaard M, Nemec P, Ofer N, Pfisterer UG, Pontes S, Redmond W, Rossier J, Sanes JR, Scheuermann RH, Serrano-Saiz E, Staiger JF, Somogyi P, Tam?s G, Tolias AS, Tosches MA, Garc?a MT, Wozny C, Wuttke TV, Liu Y, Yuan J, Zeng H, Lein ENature neuroscienceAuthor Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nat Neurosci. 2021 Apr; 24(4):612.Nat Neurosci2021-04-01T00:00:002021Author Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types.Authorship 1219542Authorship 1020614534097695Burg MF, Cadena SA, Denfield GH, Walker EY, Tolias AS, Bethge M, Ecker ASPLoS computational biologyLearning divisive normalization in primary visual cortex. PLoS Comput Biol. 2021 06; 17(6):e1009028.PLoS Comput Biol2021-06-07T00:00:002021Learning divisive normalization in primary visual cortex.SUNITASINGHSUNITA SINGH0.000000000000000.000000000000006957SINGH, SUNITAInstructorAuthorship 1028654634416241Tehovnik EJ, Froudarakis E, Scala F, Smirnakis SM, Patel SS, Tolias ASNeuroscience and biobehavioral reviewsVisuomotor control in mice and primates. 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Biol Psychiatry. 2023 09 15; 94(6):445-453.Biol Psychiatry2023-02-02T00:00:002023Decoding Depression Severity From Intracranial Neural Activity.Authorship 10635584436747710Schneider-Mizell CM, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Gamlin C, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, Bae JA, Castro MA, Halageri A, Jia Z, Jordan C, Kemnitz N, Lee K, Li K, Lu R, Macrina T, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Silversmith W, Turner NL, Wong W, Wu J, MICrONS Consortium, Reimer J, Tolias AS, Seung HS, Reid RC, Collman F, Ma?arico da Costa NbioRxiv : the preprint server for biologyCell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex. bioRxiv. 2024 Jan 06.bioRxiv2024-01-06T00:00:002024Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex.Authorship 10660732636949048Zador A, Escola S, Richards B, ?lveczky B, Bengio Y, Boahen K, Botvinick M, Chklovskii D, Churchland A, Clopath C, DiCarlo J, Ganguli S, Hawkins J, K?rding K, Koulakov A, LeCun Y, Lillicrap T, Marblestone A, Olshausen B, Pouget A, Savin C, Sejnowski T, Simoncelli E, Solla S, Sussillo D, Tolias AS, Tsao DNature communicationsCatalyzing next-generation Artificial Intelligence through NeuroAI. 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IEEE Open J Eng Med Biol. 2024; 5:1-13.IEEE Open J Eng Med Biol2024-02-21T00:00:002024Grand Challenges at the Interface of Engineering and Medicine.true1Adjunct Assistant ProfessorAdjunct Assistant Professortrue1Associate ProfessorAssociate Professortrue1ProfessorProfessorAuthorship 182403Authorship 255623Authorship 305542Authorship 280272Authorship 279204Authorship 141783924698278Ecker AS, Berens P, Cotton RJ, Subramaniyan M, Denfield GH, Cadwell CR, Smirnakis SM, Bethge M, Tolias ASNeuronState dependence of noise correlations in macaque primary visual cortex. Neuron. 2014 Apr 02; 82(1):235-48.Neuron2014-04-02T00:00:002014State dependence of noise correlations in macaque primary visual cortex.Authorship 367581Authorship 1454659Authorship 147037224747577Froudarakis E, Berens P, Ecker AS, Cotton RJ, Sinz FH, Yatsenko D, Saggau P, Bethge M, Tolias ASNature neurosciencePopulation code in mouse V1 facilitates readout of natural scenes through increased sparseness. 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