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AWDHESH KALIA

TitleAssistant Professor - SHP
InstitutionMD Anderson
DepartmentSchool of Health Professions
Address1515 Holcombe Blvd
Houston TX 77030-4009
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Wu CT, Shropshire WC, Bhatti MM, Cantu S, Glover IK, Anand SS, Liu X, Kalia A, Treangen TJ, Chemaly RF, Spallone A, Shelburne S. Rapid Whole Genome Characterization of High-Risk Pathogens Using Long-Read Sequencing to Identify Potential Healthcare Transmission. medRxiv. 2024 Aug 20. PMID: 39228727; PMCID: PMC11370528.
      Citations:    
    2. Shropshire WC, Song X, Bremer J, Seo S, Rodriguez S, Anand SS, Dinh AQ, Bhatti MM, Konovalova A, Arias CA, Kalia A, Shamoo Y, Shelburne SA. Comprehensive Assessment of Initial Adaptation of ESBL Positive ST131 Escherichia coli to Carbapenem Exposure. bioRxiv. 2024 Jul 31. PMID: 39211100; PMCID: PMC11360896.
      Citations:    
    3. Selvaraj Anand S, Wu CT, Bremer J, Bhatti M, Treangen TJ, Kalia A, Shelburne SA, Shropshire WC. Identification of a novel CG307 sub-clade in third-generation-cephalosporin-resistant Klebsiella pneumoniae causing invasive infections in the USA. Microb Genom. 2024 Feb; 10(2). PMID: 38407244; PMCID: PMC10926705.
      Citations:    Fields:    Translation:HumansCells
    4. Esplen HP, Yang RK, Kalia A, Tang Z, Tang G, Medeiros LJ, Toruner GA. Recurrent Somatic Copy Number Alterations and Their Association with Oncogene Expression Levels in High-Grade Ovarian Serous Carcinoma. Life (Basel). 2023 Nov 10; 13(11). PMID: 38004332; PMCID: PMC10672014.
      Citations: 1     
    5. Shropshire WC, Strope B, Selvaraj Anand S, Bremer J, McDaneld P, Bhatti MM, Flores AR, Kalia A, Shelburne SA. Temporal dynamics of genetically heterogeneous extended-spectrum cephalosporin-resistant Escherichia coli bloodstream infections. mSphere. 2023 08 24; 8(4):e0018323. PMID: 37427953; PMCID: PMC10449519.
      Citations: 1     Fields:    Translation:HumansCells
    6. Shropshire WC, Strope B, Anand SS, Bremer J, McDaneld P, Bhatti MM, Flores AR, Kalia A, Shelburne SA. Temporal Dynamics of Genetically Heterogeneous Extended-Spectrum Cephalosporin Resistant Escherichia coli Bloodstream Infections. bioRxiv. 2023 Apr 11. PMID: 36798241; PMCID: PMC9934547.
      Citations:    
    7. Shropshire WC, Aitken SL, Pifer R, Kim J, Bhatti MM, Li X, Kalia A, Sahasrabhojane P, Arias CA, Greenberg DE, Hanson BM, Shelburne SA, Galloway-Pe?a J. IS26-mediated amplification of blaOXA-1 and blaCTX-M-15 with concurrent outer membrane porin disruption associated with de novo carbapenem resistance in a recurrent bacteraemia cohort. J Antimicrob Chemother. 2021 01 19; 76(2):385-395. PMID: 33164081; PMCID: PMC7816169.
      Citations: 7     Fields:    Translation:Humans
    8. Shelburne SA, Dib RW, Endres BT, Reitzel R, Li X, Kalia A, Sahasrabhojane P, Chaftari AM, Hachem R, Vargas-Cruz NS, Jiang Y, Garey K, Fowler VG, Holland TL, Gu J, Miller W, Sakurai A, Arias CA, Aitken SL, Greenberg DE, Kim J, Flores AR, Raad I. Whole-genome sequencing of Staphylococcus epidermidis bloodstream isolates from a prospective clinical trial reveals that complicated bacteraemia is caused by a limited number of closely related sequence types. Clin Microbiol Infect. 2020 May; 26(5):646.e1-646.e8. PMID: 31639470.
      Citations: 6     Fields:    Translation:HumansCells
    9. Donaldson K, Buchanich JM, Grigson PS, Deneke E, Vrana KE, Sacks DB, Kuehn GJ, Cardamone D, Pesce A, Smiley S, Nickley J, Krock K, Thomas R, Wilkerson ML, Farag HA, Challa SR, Tice AM, Wolk DM, Prichard J, Grant ML, Regmi S, Kerbacher B, Quinton LE, Tice AM, Olson J, Haynes A, Yu E, McCully KS, Assi J, Wong M, Zarrin-Khameh N, Nifong TP, Hawker CD, Carlton GT, Rivera JM, Foulis PR, Zuraw A, Morlote D, Peker D, Reddy V, Harada S, Crutchfield C, Zander D, Barbhuiya MA, Pederson EC, Straub ML, Scott SC, Neibauer TL, Salter WF, Creer MH, Zhu Y, Bornhorst JA, Theobald JP, Algeciras-Schimnich A, Cao L, Knox J, Hardy R, Texas HJ, McGuire MF, Hunter RL, Brown RE, Hicks J, Cai Z, Brown RE, Ali Y, Cheng KC, Katz SR, Ding Y, Vanselow DJ, Yakovlev MA, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, Newell J, Hossler C, Roche M, Warrick J, Phaeton R, Kesterson J, Myers C, Barrios R, Mintz P, Robyak K, Hamilton C, McGhee P, Pederson C, Straub M, Scott S, Neibauer T, Salter W, Creer M, Singh N, Morlote D, Vnencak-Jones C, Yemelyanova A, Harada S, Shah M, Moghadamtousi SZ, Lan C, Duose D, Hu P, Esquenazi Y, Luthra R, Ballester LY, Koenig AN, Liu CG, Zhang J, Kalia A, Al-Habib A, Van Arsdall M, Dhingra S, Patel K, Tatevian N, La Rivi?re PJ. Abstracts of Presentations at the Association of Clinical Scientists 139th Meeting Hershey, PA, May 15-18, 2019. Ann Clin Lab Sci. 2019 05; 49(3):403-416. PMID: 31308044.
      Citations:    Fields:    
    10. Aryal NK, Pant V, Wasylishen AR, Parker-Thornburg J, Baseler L, El-Naggar AK, Liu B, Kalia A, Lozano G, Arur S. Constitutive Dicer1 phosphorylation accelerates metabolism and aging in vivo. Proc Natl Acad Sci U S A. 2019 01 15; 116(3):960-969. PMID: 30593561; PMCID: PMC6338878.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    11. DebRoy S, Brumlow C, Li X, Tran TT, Horstmann N, Yao H, Chen K, Wang F, Pan BF, Hawke DH, Thompson EJ, Arias CA, Fowler VG, Bhatti MM, Kalia A, Flores AR, Shelburne SA, Galloway-Pe?a J. Hypervirulent group A Streptococcus emergence in an acaspular background is associated with marked remodeling of the bacterial cell surface. PLoS One. 2018; 13(12):e0207897. PMID: 30517150; PMCID: PMC6281247.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    12. DebRoy S, Li X, Kalia A, Galloway-Pena J, Shah BJ, Fowler VG, Flores AR, Shelburne SA. Identification of a chimeric emm gene and novel emm pattern in currently circulating strains of emm4 Group A Streptococcus. Microb Genom. 2018 11; 4(11). PMID: 30412460; PMCID: PMC6321872.
      Citations: 6     Fields:    Translation:HumansCells
    13. Li X, Arias CA, Aitken SL, Panesso D, Chang M, Diaz L, Rios R, Numan Y, Ghaoui S, DebRoy S, Bhatti MM, Simmons DE, Raad I, Hachem R, Folan SA, Sahasarabhojane P, Kalia A, Shelburne SA, Galloway Pe?a J. Clonal Emergence of Invasive Multidrug-Resistant Staphylococcus epidermidis Deconvoluted via a Combination of Whole-Genome Sequencing and Microbiome Analyses. Clin Infect Dis. 2018 07 18; 67(3):398-406. PMID: 29546356; PMCID: PMC6051468.
      Citations: 13     Fields:    Translation:HumansCells
    14. Perpich JD, Kalia A, Price CTD, Jones SC, Kwaik YA, Wong K, Gehring K. Divergent evolution of Di-lysine ER retention vs. farnesylation motif-mediated anchoring of the AnkB virulence effector to the Legionella-containing vacuolar membrane. Sci Rep. 2017 07 11; 7(1):5123. PMID: 28698607; PMCID: PMC5506055.
      Citations: 4     Fields:    Translation:HumansCells
    15. Bhatti MD, Kalia A, Sahasrabhojane P, Kim J, Greenberg DE, Shelburne SA. Identification and Whole Genome Sequencing of the First Case of Kosakonia radicincitans Causing a Human Bloodstream Infection. Front Microbiol. 2017; 8:62. PMID: 28174569; PMCID: PMC5258702.
      Citations: 3     
    16. Petrosyan V, Holder M, Ajami NJ, Petrosino JF, Sahasrabhojane P, Thompson EJ, Kalia A, Shelburne SA. Complete Genome Sequence of Streptococcus mitis Strain SVGS_061 Isolated from a Neutropenic Patient with Viridans Group Streptococcal Shock Syndrome. Genome Announc. 2016 Apr 07; 4(2). PMID: 27056234; PMCID: PMC4824267.
      Citations: 3     
    17. Evers C, Patel K, Petrosyan V, Morrison C, Varghese V, Chu RA, Baig A, Thompson EJ, Chase M, Hu PC, Kalia A. Draft Genome Sequences of Four Genetically Distinct Human Isolates of Streptococcus dysgalactiae subsp. equisimilis. Genome Announc. 2015 Oct 01; 3(5). PMID: 26430051; PMCID: PMC4591323.
      Citations:    
    18. Drake M, Furuta T, Suen KM, Gonzalez G, Liu B, Kalia A, Ladbury JE, Fire AZ, Skeath JB, Arur S. A requirement for ERK-dependent Dicer phosphorylation in coordinating oocyte-to-embryo transition in C. elegans. Dev Cell. 2014 Dec 08; 31(5):614-28. PMID: 25490268; PMCID: PMC4261158.
      Citations: 40     Fields:    Translation:AnimalsCells
    19. Putty K, Marcus SA, Mittl PR, Bogadi LE, Hunter AM, Arur S, Berg DE, Sethu P, Kalia A. Robustness of Helicobacter pylori infection conferred by context-variable redundancy among cysteine-rich paralogs. PLoS One. 2013; 8(3):e59560. PMID: 23555707; PMCID: PMC3608669.
      Citations: 3     Fields:    Translation:HumansCells
    20. Kersulyte D, Kalia A, Gilman RH, Mendez M, Herrera P, Cabrera L, Balqui J, Paredes Puente de la Vega F, Rodriguez Ulloa CA, Cok J, Hooper CC, Dailide G, Tamma S, Berg DE, Velapati?o B. Helicobacter pylori from Peruvian amerindians: traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain. PLoS One. 2010 Nov 29; 5(11):e15076. PMID: 21124785; PMCID: PMC2993954.
      Citations: 52     Fields:    Translation:HumansCells
    21. Price CT, Al-Khodor S, Al-Quadan T, Santic M, Habyarimana F, Kalia A, Kwaik YA. Molecular mimicry by an F-box effector of Legionella pneumophila hijacks a conserved polyubiquitination machinery within macrophages and protozoa. PLoS Pathog. 2009 Dec; 5(12):e1000704. PMID: 20041211; PMCID: PMC2790608.
      Citations: 102     Fields:    Translation:HumansAnimalsCells
    22. Al-Khodor S, Price CT, Kalia A, Abu Kwaik Y. Functional diversity of ankyrin repeats in microbial proteins. Trends Microbiol. 2010 Mar; 18(3):132-9. PMID: 19962898; PMCID: PMC2834824.
      Citations: 108     Fields:    Translation:Cells
    23. Kersulyte D, Lee W, Subramaniam D, Anant S, Herrera P, Cabrera L, Balqui J, Barabas O, Kalia A, Gilman RH, Berg DE. Helicobacter Pylori's plasticity zones are novel transposable elements. PLoS One. 2009 Sep 03; 4(9):e6859. PMID: 19727398; PMCID: PMC2731543.
      Citations: 57     Fields:    Translation:HumansAnimalsCells
    24. Slomianka L, Ziegler U, Choi SS, Kalia A, Fulurija A, Lu W, Berg DE, Benghezal M, Marshall B, Mittl PR, Dumrese C. The secreted Helicobacter cysteine-rich protein A causes adherence of human monocytes and differentiation into a macrophage-like phenotype. FEBS Lett. 2009 May 19; 583(10):1637-43. PMID: 19393649; PMCID: PMC2764743.
      Citations: 20     Fields:    Translation:HumansCells
    25. Al-Khodor S, Price CT, Habyarimana F, Kalia A, Abu Kwaik Y. A Dot/Icm-translocated ankyrin protein of Legionella pneumophila is required for intracellular proliferation within human macrophages and protozoa. Mol Microbiol. 2008 Nov; 70(4):908-23. PMID: 18811729; PMCID: PMC3064707.
      Citations: 83     Fields:    Translation:HumansAnimalsCells
    26. Habyarimana F, Al-Khodor S, Kalia A, Graham JE, Price CT, Garcia MT, Kwaik YA. Role for the Ankyrin eukaryotic-like genes of Legionella pneumophila in parasitism of protozoan hosts and human macrophages. Environ Microbiol. 2008 Jun; 10(6):1460-74. PMID: 18279343.
      Citations: 55     Fields:    Translation:HumansAnimalsCells
    27. Ogura M, Perez JC, Mittl PR, Lee HK, Dailide G, Tan S, Ito Y, Secka O, Dailidiene D, Putty K, Berg DE, Kalia A. Helicobacter pylori evolution: lineage- specific adaptations in homologs of eukaryotic Sel1-like genes. PLoS Comput Biol. 2007 Aug; 3(8):e151. PMID: 17696605; PMCID: PMC1941758.
      Citations: 23     Fields:    Translation:Cells
    28. Aspholm M, Kalia A, Ruhl S, Schedin S, Arnqvist A, Gerhard M, Semino-Mora C, Dubois A, Unemo M, Danielsson D, Teneberg S, Lee WK, Berg DE, Lind?n S, Sj?str?m R, Bor?n T. Helicobacter pylori adhesion to carbohydrates. Methods Enzymol. 2006; 417:293-339. PMID: 17132512; PMCID: PMC2576508.
      Citations: 29     Fields:    Translation:HumansCells
    29. Albert TJ, Dailidiene D, Dailide G, Norton JE, Kalia A, Richmond TA, Molla M, Singh J, Green RD, Berg DE. Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori. Nat Methods. 2005 Dec; 2(12):951-3. PMID: 16299480.
      Citations: 87     Fields:    Translation:Cells
    30. Kersulyte D, Kalia A, Zhang M, Lee HK, Subramaniam D, Kiuduliene L, Chalkauskas H, Berg DE. Sequence organization and insertion specificity of the novel chimeric ISHp609 transposable element of Helicobacter pylori. J Bacteriol. 2004 Nov; 186(22):7521-8. PMID: 15516563; PMCID: PMC524915.
      Citations: 17     Fields:    Translation:HumansCells
    31. Kalia A, Mukhopadhyay AK, Dailide G, Ito Y, Azuma T, Wong BC, Berg DE. Evolutionary dynamics of insertion sequences in Helicobacter pylori. J Bacteriol. 2004 Nov; 186(22):7508-20. PMID: 15516562; PMCID: PMC524885.
      Citations: 12     Fields:    Translation:HumansCells
    32. Dailide G, Lahmann M, Kalia A, Ilver D, Roche N, Lundberg C, Arnqvist A, Mahdavi J, Nilsson UJ, Gilman RH, Gerhard M, Alarcon T, Nakazawa T, Fox JG, Correa P, Dominguez-Bello MG, Perez-Perez GI, Blaser MJ, Normark S, Carlstedt I, Oscarson S, Teneberg S, Berg DE, Aspholm-Hurtig M, Vikstr?m S, Sj?str?m R, Lind?n S, B?ckstr?m A, Velapati?o B, L?pez-Brea M, Bor?n T. Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin. Science. 2004 Jul 23; 305(5683):519-22. PMID: 15273394.
      Citations: 160     Fields:    Translation:HumansCells
    33. McGregor KF, Spratt BG, Kalia A, Bennett A, Bilek N, Beall B, Bessen DE. Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures. J Bacteriol. 2004 Jul; 186(13):4285-94. PMID: 15205431; PMCID: PMC421626.
      Citations: 59     Fields:    Translation:Cells
    34. McGregor KF, Bilek N, Bennett A, Kalia A, Beall B, Carapetis JR, Currie BJ, Sriprakash KS, Spratt BG, Bessen DE. Group A streptococci from a remote community have novel multilocus genotypes but share emm types and housekeeping alleles with isolates from worldwide sources. J Infect Dis. 2004 Feb 15; 189(4):717-23. PMID: 14767827.
      Citations: 22     Fields:    Translation:HumansCells
    35. Kalia A, Bessen DE. Natural selection and evolution of streptococcal virulence genes involved in tissue-specific adaptations. J Bacteriol. 2004 Jan; 186(1):110-21. PMID: 14679231; PMCID: PMC303441.
      Citations: 57     Fields:    Translation:HumansCells
    36. Kalia A, Bessen DE. Presence of streptococcal pyrogenic exotoxin A and C genes in human isolates of group G streptococci. FEMS Microbiol Lett. 2003 Feb 28; 219(2):291-5. PMID: 12620634.
      Citations: 22     Fields:    Translation:HumansCells
    37. Kalia A, Spratt BG, Enright MC, Bessen DE. Influence of recombination and niche separation on the population genetic structure of the pathogen Streptococcus pyogenes. Infect Immun. 2002 Apr; 70(4):1971-83. PMID: 11895961; PMCID: PMC127860.
      Citations: 27     Fields:    Translation:Cells
    38. Bessen DE, Kalia A. Genomic localization of a T serotype locus to a recombinatorial zone encoding extracellular matrix-binding proteins in Streptococcus pyogenes. Infect Immun. 2002 Mar; 70(3):1159-67. PMID: 11854196; PMCID: PMC127806.
      Citations: 70     Fields:    Translation:Cells
    39. Kalia A, Enright MC, Spratt BG, Bessen DE. Directional gene movement from human-pathogenic to commensal-like streptococci. Infect Immun. 2001 Aug; 69(8):4858-69. PMID: 11447161; PMCID: PMC98575.
      Citations: 26     Fields:    Translation:HumansCells
    40. Enright MC, Spratt BG, Kalia A, Cross JH, Bessen DE. Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect Immun. 2001 Apr; 69(4):2416-27. PMID: 11254602; PMCID: PMC98174.
      Citations: 131     Fields:    Translation:Cells
    41. Feil EJ, Holmes EC, Bessen DE, Chan MS, Day NP, Enright MC, Goldstein R, Hood DW, Kalia A, Moore CE, Zhou J, Spratt BG. Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences. Proc Natl Acad Sci U S A. 2001 Jan 02; 98(1):182-7. PMID: 11136255; PMCID: PMC14565.
      Citations: 205     Fields:    Translation:Cells
    42. Kalia A, Rattan A, Chopra P. A method for extraction of high-quality and high-quantity genomic DNA generally applicable to pathogenic bacteria. Anal Biochem. 1999 Nov 01; 275(1):1-5. PMID: 10542102.
      Citations: 10     Fields:    Translation:Cells
    43. Rattan A, Kalia A, Ahmad N. Multidrug-resistant Mycobacterium tuberculosis: molecular perspectives. Emerg Infect Dis. 1998 Apr-Jun; 4(2):195-209. PMID: 9621190; PMCID: PMC2640153.
      Citations: 74     Fields:    Translation:HumansCells
    44. Khan FG, Rattan A, Khan IA, Kalia A. Study of Pseudomonas aeruginosa causing ventilator associated pneumonia. Indian J Med Res. 1998 Feb; 107:68-74. PMID: 9540279.
      Citations: 1     Fields:    Translation:HumansCells
    45. Verma A, Kottat AJ, Kalia A, Kapoor SK, Rattan A. Susceptibility of Staphylococcus aureus at a rural clinic. Natl Med J India. 1997 Sep-Oct; 10(5):255. PMID: 9401394.
      Citations:    Fields:    Translation:HumansCells
    46. Gupta R, Kalia A, Rattan A, Kumar R, Gupta SK. Comparative evaluation of two indigenously developed tests for rapid detection of group-A streptococci directly from throat swabs. Indian J Med Res. 1997 May; 105:200-5. PMID: 9183075.
      Citations: 2     Fields:    Translation:HumansCells
    47. Khan FG, Rattan A, Khan IA, Kalia A. A preliminary study of fingerprinting of Pseudomonas aeruginosa by whole cell protein analysis by SDS-PAGE. Indian J Med Res. 1996 Dec; 104:342-8. PMID: 8996934.
      Citations: 1     Fields:    Translation:Cells
    48. Khan IA, Rattan A, Fatima T, Khan FG, Kalia A. Application of whole cell protein analysis by SDS PAGE to establish the source of Salmonella typhimurium. J Infect. 1996 Nov; 33(3):169-71. PMID: 8945705.
      Citations:    Fields:    Translation:HumansAnimalsCells
    49. Connecting microbial population genetics with microbial pathogenesis. 745-760.
    50. Draft genome sequences of four genetically distinct human isolates of Streptococcus dysgalactiae subsp. equisimilis. Genome Announcements. 3.
    51. Connecting microbial population genetics with microbial pathogenesis. 533-548.
    52. Directional gene movement from human-pathogenic to commensal-like streptococci (Infection and Immunity (2001) 69, 8 (4858-4869)). Infection and Immunity. 77:4688.
    53. The population structure of pathogenic bacteria.
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