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CHAO CHENG

TitleSenior Faculty
InstitutionBaylor College of Medicine
DepartmentDepartment of Medicine
DivisionMedicine-Epidemiology & Populat Sci
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Ding Z, Lu W, Dai C, Huang W, Liu F, Shan W, Cheng C, Xu J, Yin Z, He W. The CRD of Frizzled 7 exhibits chondroprotective effects in osteoarthritis via inhibition of the canonical Wnt3a/ß-catenin signaling pathway. Int Immunopharmacol. 2020 Mar 06; 82:106367. PMID: 32151961.
      View in: PubMed
    2. Schaafsma E, Zhao Y, Wang Y, Varn FS, Zhu K, Yang H, Cheng C. Whole transcriptome signature for prognostic prediction (WTSPP): application of whole transcriptome signature for prognostic prediction in cancer. Lab Invest. 2020 Mar 06. PMID: 32144347.
      View in: PubMed
    3. ElTanbouly MA, Zhao Y, Nowak E, Li J, Schaafsma E, Le Mercier I, Ceeraz S, Lines JL, Peng C, Carriere C, Huang X, Day M, Koehn B, Lee SW, Silva Morales M, Hogquist KA, Jameson SC, Mueller D, Rothstein J, Blazar BR, Cheng C, Noelle RJ. VISTA is a checkpoint regulator for naïve T cell quiescence and peripheral tolerance. Science. 2020 01 17; 367(6475). PMID: 31949051.
      View in: PubMed
    4. Xie F, Zhang J, Wang J, Reuben A, Xu W, Yi X, Varn FS, Ye Y, Cheng J, Yu M, Wang Y, Liu Y, Xie M, Du P, Ma K, Ma X, Zhou P, Yang S, Chen Y, Wang G, Xia X, Liao Z, Heymach JV, Wistuba II, Futreal PA, Ye K, Cheng C, Xia T. Multifactorial deep learning reveals pan-cancer genomic tumor clusters with distinct immunogenomic landscape and response to immunotherapy. Clin Cancer Res. 2020 Jan 07. PMID: 31911545.
      View in: PubMed
    5. Qin C, He X, Zhao Y, Tong CY, Zhu KY, Sun Y, Cheng C. Systematic computational identification of prognostic cytogenetic markers in neuroblastoma. BMC Med Genomics. 2019 12 12; 12(1):192. PMID: 31831008.
      View in: PubMed
    6. Feng WW, Wilkins O, Bang S, Ung M, Li J, An J, Del Genio C, Canfield K, DiRenzo J, Wells W, Gaur A, Robey RB, Guo JY, Powles RL, Sotiriou C, Pusztai L, Febbraio M, Cheng C, Kinlaw WB, Kurokawa M. CD36-Mediated Metabolic Rewiring of Breast Cancer Cells Promotes Resistance to HER2-Targeted Therapies. Cell Rep. 2019 Dec 10; 29(11):3405-3420.e5. PMID: 31825825.
      View in: PubMed
    7. Schaafsma E, Yuan Y, Zhao Y, Cheng C. Computational STAT3 activity inference reveals its roles in the pancreatic tumor microenvironment. Sci Rep. 2019 Dec 03; 9(1):18257. PMID: 31796877.
      View in: PubMed
    8. Chen H, Carrot-Zhang J, Zhao Y, Hu H, Freeman SS, Yu S, Ha G, Taylor AM, Berger AC, Westlake L, Zheng Y, Zhang J, Ramachandran A, Zheng Q, Pan Y, Zheng D, Zheng S, Cheng C, Kuang M, Zhou X, Zhang Y, Li H, Ye T, Ma Y, Gao Z, Tao X, Han H, Shang J, Yu Y, Bao D, Huang Y, Li X, Zhang Y, Xiang J, Sun Y, Li Y, Cherniack AD, Campbell JD, Shi L, Meyerson M. Genomic and immune profiling of pre-invasive lung adenocarcinoma. Nat Commun. 2019 11 29; 10(1):5472. PMID: 31784532.
      View in: PubMed
    9. Liu F, Li L, Lu W, Ding Z, Huang W, Li YT, Cheng C, Shan WS, Xu J, He W, Yin Z. Scutellarin ameliorates cartilage degeneration in osteoarthritis by inhibiting the Wnt/ß-catenin and MAPK signaling pathways. Int Immunopharmacol. 2020 Jan; 78:105954. PMID: 31757676.
      View in: PubMed
    10. Cheng C, Ma J, Wang J, Du Z, Li B, Wang J, Gao C, Zhu L. Toxicity comparison of three imidazolium bromide ionic liquids to soil microorganisms. Environ Pollut. 2019 Dec; 255(Pt 2):113321. PMID: 31610515.
      View in: PubMed
    11. He J, Liu J, Zhu C, Dai T, Cai K, Zhang Z, Cheng C, Qiao K, Liu X, Wang G, Xu S, Yang R, Fan J, Li H, Jin J, Dong Q, Liang L, Ding J, He K, Liu Y, Ye J, Feng S, Jiang Y, Huang H, Zhang H, Liu Z, Feng X, Xia Z, Ma M, Duan Z, Huang T, Li Y, Shen Q, Tan W, Ma H, Sun Y, Chen C, Cui F, Wang W, Li J, Hao Z, Liu H, Liang W, Zou X, Liang H, Yang H, Li Y, Jiang S, Ng CSH, González-Rivas D, Pompeo E, Flores RM, Shargall Y, Ismail M, Bedetti B, Elkhouly AG, Ang K. Expert consensus on spontaneous ventilation video-assisted thoracoscopic surgery in primary spontaneous pneumothorax (Guangzhou). Ann Transl Med. 2019 Oct; 7(20):518. PMID: 31807500.
      View in: PubMed
    12. He J, Liu J, Zhu C, Dai T, Cai K, Zhang Z, Cheng C, Qiao K, Liu X, Wang G, Xu S, Yang R, Fan J, Li H, Jin J, Dong Q, Liang L, Ding J, He K, Liu Y, Ye J, Feng S, Jiang Y, Huang H, Zhang H, Liu Z, Feng X, Xia Z, Ma M, Duan Z, Huang T, Li Y, Shen Q, Tan W, Ma H, Sun Y, Chen C, Cui F, Wang W, Li J, Hao Z, Liu H, Liang W, Zou X, Liang H, Yang H, Li Y, Jiang S, Ng CSH, González-Rivas D, Pompeo E, Flores RM, Shargall Y, Ismail M, Ambrogi V, Elkhouly AG, Sung SW, Ang K. Expert consensus on tubeless video-assisted thoracoscopic surgery (Guangzhou). J Thorac Dis. 2019 Oct; 11(10):4101-4108. PMID: 31737292.
      View in: PubMed
    13. Wang Y, Franks JM, Whitfield ML, Cheng C. BioMethyl: an R package for biological interpretation of DNA methylation data. Bioinformatics. 2019 Oct 01; 35(19):3635-3641. PMID: 30799505.
      View in: PubMed
    14. Shee K, Wells JD, Ung M, Hampsch RA, Traphagen NA, Yang W, Liu SC, Zeldenrust MA, Wang L, Kalari KR, Yu J, Boughey JC, Demidenko E, Kettenbach AN, Cheng C, Goetz MP, Miller TW. A Transcriptionally Definable Subgroup of Triple-Negative Breast and Ovarian Cancer Samples Shows Sensitivity to HSP90 Inhibition. Clin Cancer Res. 2020 Jan 01; 26(1):159-170. PMID: 31558472.
      View in: PubMed
    15. Lu W, Ding Z, Liu F, Shan W, Cheng C, Xu J, He W, Huang W, Ma J, Yin Z. Dopamine delays articular cartilage degradation in osteoarthritis by negative regulation of the NF-?B and JAK2/STAT3 signaling pathways. Biomed Pharmacother. 2019 Nov; 119:109419. PMID: 31563117.
      View in: PubMed
    16. Yang W, Tian ZK, Yang HX, Feng ZJ, Sun JM, Jiang H, Cheng C, Ming QL, Liu CM. Fisetin improves lead-induced neuroinflammation, apoptosis and synaptic dysfunction in mice associated with the AMPK/SIRT1 and autophagy pathway. Food Chem Toxicol. 2019 Dec; 134:110824. PMID: 31539617.
      View in: PubMed
    17. Wu Z, Zhu Z, Cheng C, Zhang J, Gong Y, Xu M, Li S, Zhao H. Terahertz spectroscopy of enantiomeric and racemic pyroglutamic acid. Spectrochim Acta A Mol Biomol Spectrosc. 2020 Jan 15; 225:117509. PMID: 31606660.
      View in: PubMed
    18. Wang L, Ma G, Wang H, Cheng C, Mu S, Quan W, Jiang L, Zhao Z, Zhang Y, Zhang K, Wang X, Tian C, Zhang Y. A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells. Gigascience. 2019 09 01; 8(9). PMID: 31513708.
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    19. Hu Y, Yu L, Xia F, Liang F, Cheng C, Huang Y, Xiao L. Effect of laparoscopic myomectomy on serum levels of IL-6 and TAC, and ovarian function. Exp Ther Med. 2019 Nov; 18(5):3588-3594. PMID: 31602235.
      View in: PubMed
    20. Ren G, Zong S, Zhu Z, Cheng C, Chen L, Zhou L, Zhang J, Liu L, Han J, Zhao H. Far-infrared terahertz properties of L-cysteine and its hydrochloride monohydrate. Spectrochim Acta A Mol Biomol Spectrosc. 2020 Jan 15; 225:117476. PMID: 31470346.
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    21. Sun W, Chen D, Xue Y, Zhai L, Zhang D, Cao Z, Liu L, Cheng C, Zhang Y, Zhang Z. Genome-wide identification of AGO18b-bound miRNAs and phasiRNAs in maize by cRIP-seq. BMC Genomics. 2019 Aug 16; 20(1):656. PMID: 31419938.
      View in: PubMed
    22. Huang W, Cheng C, Shan WS, Ding ZF, Liu FE, Lu W, He W, Xu JG, Yin ZS. Knockdown of SGK1 alleviates the IL-1ß-induced chondrocyte anabolic and catabolic imbalance by activating FoxO1-mediated autophagy in human chondrocytes. FEBS J. 2020 Jan; 287(1):94-107. PMID: 31330080.
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    23. Zhao T, Chen H, Cheng C, Zhang J, Yan Z, Kuang J, Kong F, Li C, Lu Q. Liraglutide protects high-glucose-stimulated fibroblasts by activating the CD36-JNK-AP1 pathway to downregulate P4HA1. Biomed Pharmacother. 2019 Oct; 118:109224. PMID: 31349139.
      View in: PubMed
    24. Shan W, Cheng C, Huang W, Ding Z, Luo S, Cui G, Lu W, Liu F, Xu J, He W, Yin Z. Angiopoietin-like 2 upregulation promotes human chondrocyte injury via NF-?B and p38/MAPK signaling pathway. J Bone Miner Metab. 2019 Nov; 37(6):976-986. PMID: 31214838.
      View in: PubMed
    25. Li Y, Wu K, Quan W, Yu L, Chen S, Cheng C, Wu Q, Zhao S, Zhang Y, Zhou L. The dynamics of FTO binding and demethylation from the m6A motifs. RNA Biol. 2019 09; 16(9):1179-1189. PMID: 31149892.
      View in: PubMed
    26. Zhao Y, Carter R, Natarajan S, Varn FS, Compton DA, Gawad C, Cheng C, Godek KM. Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells. BMC Med Genomics. 2019 05 31; 12(1):79. PMID: 31151460.
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    27. Almiron Bonnin DA, Havrda MC, Lee MC, Evans L, Ran C, Qian DC, Harrington LX, Valdes PA, Cheng C, Amos CI, Harris BT, Paulsen KD, Roberts DW, Israel MA. Characterizing the heterogeneity in 5-aminolevulinic acid-induced fluorescence in glioblastoma. J Neurosurg. 2019 May 24; 1-9. PMID: 31125970.
      View in: PubMed
    28. Deng J, Li J, Sarde A, Lines JL, Lee YC, Qian DC, Pechenick DA, Manivanh R, Le Mercier I, Lowrey CH, Varn FS, Cheng C, Leib DA, Noelle RJ, Mabaera R. Hypoxia-Induced VISTA Promotes the Suppressive Function of Myeloid-Derived Suppressor Cells in the Tumor Microenvironment. Cancer Immunol Res. 2019 Jul; 7(7):1079-1090. PMID: 31088847.
      View in: PubMed
    29. Zhao Y, Cheng C, Jiang T, Xu H, Chen Y, Ma Z, Qian G, Liu F. Control of Wheat Fusarium Head Blight by Heat-Stable Antifungal Factor (HSAF) from Lysobacter enzymogenes. Plant Dis. 2019 Jun; 103(6):1286-1292. PMID: 30995421.
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    30. Xu G, Zhou CS, Tang WZ, Xu J, Xu G, Li XL, Wei Q, Cheng C, Li W, Cai HD, Wang LD. [Neuroprotective effect of surround needling combined with acupoint injection on acute herpetic neuralgia]. Zhongguo Zhen Jiu. 2019 Apr 12; 39(4):371-6. PMID: 30957447.
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    31. Qi X, Jiao Y, Cheng C, Qian F, Chen Z, Wu Q. H22954, a novel long non-coding RNA down-regulated in AML, inhibits cancer growth in a BCL-2-dependent mechanism. Cancer Lett. 2019 07 10; 454:26-36. PMID: 30959078.
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    32. Liang Z, Liu Z, Cheng C, Wang H, Deng X, Liu J, Liu C, Li Y, Fang W. VPS33B interacts with NESG1 to modulate EGFR/PI3K/AKT/c-Myc/P53/miR-133a-3p signaling and induce 5-fluorouracil sensitivity in nasopharyngeal carcinoma. Cell Death Dis. 2019 04 03; 10(4):305. PMID: 30944308.
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    33. Sun Z, Xu L, Chen Z, Wang Y, Tusiime R, Cheng C, Zhou S, Liu Y, Yu M, Zhang H. Enhancing the Mechanical and Thermal Properties of Epoxy Resin via Blending with Thermoplastic Polysulfone. Polymers (Basel). 2019 Mar 11; 11(3). PMID: 30960445.
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    34. Xiang Y, Wu C, Wu J, Quan W, Cheng C, Zhou J, Chen L, Xiang L, Li F, Zhang K, Ran Q, Zhang Y, Li Z. In vitro expansion affects the response of human bone marrow stromal cells to irradiation. Stem Cell Res Ther. 2019 03 08; 10(1):82. PMID: 30850008.
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    35. Liu Y, Cheng C, Bai L, Yao F, Shi S, Zhang Y. Value of bile soluble B7H3 for the diagnosis of malignant biliary strictures: Results of a retrospective study. Surg Oncol. 2019 Mar; 28:195-200. PMID: 30851900.
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    36. Chen Y, Wang Y, Salas LA, Miller TW, Mark K, Marotti JD, Kettenbach AN, Cheng C, Christensen BC. Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier. Breast Cancer Res. 2019 01 25; 21(1):14. PMID: 30683142.
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    37. Peng F, He Q, Cheng C, Pan J. GCNT2 induces epithelial-mesenchymal transition and promotes migration and invasion in esophageal squamous cell carcinoma cells. Cell Biochem Funct. 2019 Jan; 37(1):42-51. PMID: 30575058.
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    38. Cheng C, Shan W, Huang W, Ding Z, Cui G, Liu F, Lu W, Xu J, He W, Yin Z. ACY-1215 exhibits anti-inflammatory and chondroprotective effects in human osteoarthritis chondrocytes via inhibition of STAT3 and NF-?B signaling pathways. Biomed Pharmacother. 2019 Jan; 109:2464-2471. PMID: 30551507.
      View in: PubMed
    39. Pan Y, Yuan C, Cheng C, Zhang Y, Ma Y, Zheng D, Zheng S, Li Y, Jin Y, Sun Y, Chen H. Frequency and clinical significance of NF1 mutation in lung adenocarcinomas from East Asian patients. Int J Cancer. 2019 01 15; 144(2):290-296. PMID: 30230541.
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    40. Ung MH, MacKenzie TA, Onega TL, Amos CI, Cheng C. Statins associate with improved mortality among patients with certain histological subtypes of lung cancer. Lung Cancer. 2018 12; 126:89-96. PMID: 30527197.
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    41. Kamal Y, Cheng C, Frost HR, Amos CI. Predictors of disease aggressiveness influence outcome from immunotherapy treatment in renal clear cell carcinoma. Oncoimmunology. 2019; 8(1):e1500106. PMID: 30546942.
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    42. Mortezaei Z, Cazier JB, Mehrabi AA, Cheng C, Masoudi-Nejad A. Novel putative drugs and key initiating genes for neurodegenerative disease determined using network-based genetic integrative analysis. J Cell Biochem. 2019 04; 120(4):5459-5471. PMID: 30302804.
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    43. Liu CM, Yang HX, Ma JQ, Yang W, Feng ZJ, Sun JM, Cheng C, Li J, Jiang H. Role of AMPK pathway in lead-induced endoplasmic reticulum stress in kidney and in paeonol-induced protection in mice. Food Chem Toxicol. 2018 Dec; 122:87-94. PMID: 30296514.
      View in: PubMed
    44. Gorlov I, Orlow I, Ringelberg C, Hernando E, Ernstoff MS, Cheng C, Her S, Parker JS, Thompson CL, Gerstenblith MR, Berwick M, Amos C. Identification of gene expression levels in primary melanoma associated with clinically meaningful characteristics. Melanoma Res. 2018 10; 28(5):380-389. PMID: 29975213.
      View in: PubMed
    45. Varn FS, Schaafsma E, Wang Y, Cheng C. Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs. Cancer Res. 2018 11 15; 78(22):6413-6423. PMID: 30254145.
      View in: PubMed
    46. Varn FS, Wang Y, Cheng C. A B cell-derived gene expression signature associates with an immunologically active tumor microenvironment and response to immune checkpoint blockade therapy. Oncoimmunology. 2019; 8(1):e1513440. PMID: 30546953.
      View in: PubMed
    47. Zhao Y, Schaafsma E, Gorlov IP, Hernando E, Thomas NE, Shen R, Turk MJ, Berwick M, Amos CI, Cheng C. A Leukocyte Infiltration Score Defined by a Gene Signature Predicts Melanoma Patient Prognosis. Mol Cancer Res. 2019 01; 17(1):109-119. PMID: 30171176.
      View in: PubMed
    48. Shee K, Jiang A, Varn FS, Liu S, Traphagen NA, Owens P, Ma CX, Hoog J, Cheng C, Golub TR, Straussman R, Miller TW. Cytokine sensitivity screening highlights BMP4 pathway signaling as a therapeutic opportunity in ER+ breast cancer. FASEB J. 2019 02; 33(2):1644-1657. PMID: 30161001.
      View in: PubMed
    49. Zhao Y, Schaafsma E, Cheng C. Applications of ENCODE data to Systematic Analyses via Data Integration. Curr Opin Syst Biol. 2018 Oct; 11:57-64. PMID: 31011690.
      View in: PubMed
    50. Du Z, Zhu Y, Zhu L, Zhang J, Li B, Wang J, Wang J, Zhang C, Cheng C. Effects of the herbicide mesotrione on soil enzyme activity and microbial communities. Ecotoxicol Environ Saf. 2018 Nov 30; 164:571-578. PMID: 30149356.
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    51. Wang Q, Li YM, Li Y, Hua FC, Wang QS, Zhang XL, Cheng C, Wu H, Yao ZM, Zhang WF, Hou QY, Miao WB, Wang XM. 18F-FDGPET/CT in fever of unknown origin and inflammation of unknown origin: a Chinese multi-center study. Eur J Nucl Med Mol Imaging. 2019 01; 46(1):159-165. PMID: 30099578.
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    52. Gao Y, Zheng J, Liang P, Tong M, Wang J, Wu C, He X, Liu C, Zhang S, Huang L, Jiang T, Cheng C, Meng F, Mu X, Lu Y, Li Y, Ai H, Qiao X, Xie XY, Wang W, Yin LP, Wu YY, Zheng R. Liver Fibrosis with Two-dimensional US Shear-Wave Elastography in Participants with Chronic Hepatitis B: A Prospective Multicenter Study. Radiology. 2018 11; 289(2):407-415. PMID: 30040048.
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    53. Liu CM, Yang W, Ma JQ, Yang HX, Feng ZJ, Sun JM, Cheng C, Jiang H. Dihydromyricetin Inhibits Lead-Induced Cognitive Impairments and Inflammation by the Adenosine 5'-Monophosphate-Activated Protein Kinase Pathway in Mice. J Agric Food Chem. 2018 Aug 01; 66(30):7975-7982. PMID: 29975840.
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    54. Fang Q, Wang Q, Mao H, Xu J, Wang Y, Hu H, He S, Tu J, Cheng C, Tian G, Wang X, Liu X, Zhang C, Luo K. AtDIV2, an R-R-type MYB transcription factor of Arabidopsis, negatively regulates salt stress by modulating ABA signaling. Plant Cell Rep. 2018 Nov; 37(11):1499-1511. PMID: 30014159.
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    55. Zhao Y, Zurawel AA, Jenkins NP, Duennwald ML, Cheng C, Kettenbach AN, Supattapone S. Comparative Analysis of Mutant Huntingtin Binding Partners in Yeast Species. Sci Rep. 2018 06 22; 8(1):9554. PMID: 29934597.
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    56. Zhang C, Zhu L, Wang J, Wang J, Du Z, Li B, Zhou T, Cheng C, Wang Z. Evaluating subchronic toxicity of fluoxastrobin using earthworms (Eisenia fetida). Sci Total Environ. 2018 Nov 15; 642:567-573. PMID: 29909323.
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    57. Kuang M, Shen X, Yuan C, Hu H, Zhang Y, Pan Y, Cheng C, Zheng D, Cheng L, Zhao Y, Tao X, Li Y, Chen H, Sun Y. Clinical Significance of Complex Glandular Patterns in Lung Adenocarcinoma: Clinicopathologic and Molecular Study in a Large Series of Cases. Am J Clin Pathol. 2018 May 31; 150(1):65-73. PMID: 29746612.
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    58. Kuklinski LF, Yan S, Li Z, Fisher JL, Cheng C, Noelle RJ, Angeles CV, Turk MJ, Ernstoff MS. VISTA expression on tumor-infiltrating inflammatory cells in primary cutaneous melanoma correlates with poor disease-specific survival. Cancer Immunol Immunother. 2018 Jul; 67(7):1113-1121. PMID: 29737375.
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    59. Cheng C, Deng L, Li R. The Immunogenicity and Anti-Tumor Efficacy of a Rationally Designed EGFR Vaccine. Cell Physiol Biochem. 2018; 46(1):46-56. PMID: 29566364.
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    60. Varn FS, Tafe LJ, Amos CI, Cheng C. Computational immune profiling in lung adenocarcinoma reveals reproducible prognostic associations with implications for immunotherapy. Oncoimmunology. 2018; 7(6):e1431084. PMID: 29872556.
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    61. Rahme GJ, Luikart BW, Cheng C, Israel MA. A recombinant lentiviral PDGF-driven mouse model of proneural glioblastoma. Neuro Oncol. 2018 02 19; 20(3):332-342. PMID: 29016807.
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    62. Shee K, Yang W, Hinds JW, Hampsch RA, Varn FS, Traphagen NA, Patel K, Cheng C, Jenkins NP, Kettenbach AN, Demidenko E, Owens P, Faber AC, Golub TR, Straussman R, Miller TW. Therapeutically targeting tumor microenvironment-mediated drug resistance in estrogen receptor-positive breast cancer. J Exp Med. 2018 03 05; 215(3):895-910. PMID: 29436393.
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    63. Deng X, Liu Z, Liu X, Fu Q, Deng T, Lu J, Liu Y, Liang Z, Jiang Q, Cheng C, Fang W. miR-296-3p Negatively Regulated by Nicotine Stimulates Cytoplasmic Translocation of c-Myc via MK2 to Suppress Chemotherapy Resistance. Mol Ther. 2018 04 04; 26(4):1066-1081. PMID: 29525743.
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    64. Liu Z, Luo C, Yang W, Wang K, Hu C, Zou J, Zhu H, Fu L, Nie J, Cheng C. Increased Numb protein expression predicts poor clinical outcomes in esophageal squamous cell carcinoma patients. Cancer Biol Ther. 2018 01 02; 19(1):34-41. PMID: 28095111.
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    65. Lin A, Yin J, Cheng C, Yang Z, Yang H. Decreased expression of FOXA2 promotes eutopic endometrial cell proliferation and migration in patients with endometriosis. Reprod Biomed Online. 2018 Feb; 36(2):181-187. PMID: 29233503.
      View in: PubMed
    66. Almiron Bonnin DA, Havrda MC, Lee MC, Liu H, Zhang Z, Nguyen LN, Harrington LX, Hassanpour S, Cheng C, Israel MA. Secretion-mediated STAT3 activation promotes self-renewal of glioma stem-like cells during hypoxia. Oncogene. 2018 02 22; 37(8):1107-1118. PMID: 29155422.
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    67. Wang Y, Ung MH, Cantor S, Cheng C. Computational Investigation of Homologous Recombination DNA Repair Deficiency in Sporadic Breast Cancer. Sci Rep. 2017 Nov 16; 7(1):15742. PMID: 29146938.
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    68. Zhao Y, Varn FS, Cai G, Xiao F, Amos CI, Cheng C. A P53-Deficiency Gene Signature Predicts Recurrence Risk of Patients with Early-Stage Lung Adenocarcinoma. Cancer Epidemiol Biomarkers Prev. 2018 01; 27(1):86-95. PMID: 29141854.
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    69. Liu CM, Ma JQ, Sun JM, Feng ZJ, Cheng C, Yang W, Jiang H. Association of changes in ER stress-mediated signaling pathway with lead-induced insulin resistance and apoptosis in rats and their prevention by A-type dimeric epigallocatechin-3-gallate. Food Chem Toxicol. 2017 Dec; 110:325-332. PMID: 29107025.
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    70. He T, Huang Y, Zhang C, Liu D, Cheng C, Xu W, Zhang X. Interleukin-17A-promoted MSC2 polarization related with new bone formation of ankylosing spondylitis. Oncotarget. 2017 Nov 14; 8(57):96993-97008. PMID: 29228588.
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    71. Cao Q, Anyansi C, Hu X, Xu L, Xiong L, Tang W, Mok MTS, Cheng C, Fan X, Gerstein M, Cheng ASL, Yip KY. Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nat Genet. 2017 Oct; 49(10):1428-1436. PMID: 28869592.
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    72. Han P, Yao R, Zhai D, Cheng C, Yang F, Sun S, Zhang D, Yu C. A case report of lung adenocarcinoma with polyserous effusions as the onset symptom. Medicine (Baltimore). 2017 Sep; 96(36):e7867. PMID: 28885340.
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    73. Liu C, Ma J, Sun J, Cheng C, Feng Z, Jiang H, Yang W. Flavonoid-Rich Extract of Paulownia fortunei Flowers Attenuates Diet-Induced Hyperlipidemia, Hepatic Steatosis and Insulin Resistance in Obesity Mice by AMPK Pathway. Nutrients. 2017 Aug 30; 9(9). PMID: 28867797.
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    74. Wang Y, Ung MH, Xia T, Cheng W, Cheng C. Cancer cell line specific co-factors modulate the FOXM1 cistrome. Oncotarget. 2017 Sep 29; 8(44):76498-76515. PMID: 29100329.
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    75. Yang Y, Liu Y, Cheng C, Shi H, Yang H, Yuan H, Ni C. Rational Design of GO-Modified Fe3O4/SiO2 Nanoparticles with Combined Rhenium-188 and Gambogic Acid for Magnetic Target Therapy. ACS Appl Mater Interfaces. 2017 Aug 30; 9(34):28195-28208. PMID: 28793762.
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    76. Pan Y, Zheng D, Li Y, Cai X, Zheng Z, Jin Y, Hu H, Cheng C, Shen L, Wang J, Ji H, Sun Y, Zhou X, Chen H. Unique distribution of programmed death ligand 1 (PD-L1) expression in East Asian non-small cell lung cancer. J Thorac Dis. 2017 Aug; 9(8):2579-2586. PMID: 28932565.
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    77. Tian A, Benchabane H, Wang Z, Zimmerman C, Xin N, Perochon J, Kalna G, Sansom OJ, Cheng C, Cordero JB, Ahmed Y. Intestinal stem cell overproliferation resulting from inactivation of the APC tumor suppressor requires the transcription cofactors Earthbound and Erect wing. PLoS Genet. 2017 Jul; 13(7):e1006870. PMID: 28708826.
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    78. Liu S, Wang Z, Chen D, Zhang B, Tian RR, Wu J, Zhang Y, Xu K, Yang LM, Cheng C, Ma J, Lv L, Zheng YT, Hu X, Zhang Y, Wang X, Li J. Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain. Genome Res. 2017 09; 27(9):1608-1620. PMID: 28687705.
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    79. Zhao W, Qu W, Fu C, Jiang H, Liu S, Cheng C. Antero-lateral minimally invasive plate osteosynthesis (MIPO) with the radial nerve exploration for extra-articular distal-third diaphyseal fractures of the humerus. Int Orthop. 2017 09; 41(9):1757-1762. PMID: 28577034.
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    80. Zhang B, Wang X, Cheng C, Sun D, Li C. Total Synthesis of (±)-Corymine. Angew Chem Int Ed Engl. 2017 06 19; 56(26):7484-7487. PMID: 28466505.
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    81. Zhang M, Gu L, Cheng C, Zhu J, Wu H, Ma J, Dong W, Kong X, Jiang M, Ouyang P. High-yield production of mannitol by Leuconostoc pseudomesenteroides CTCC G123 from chicory-derived inulin hydrolysate. J Ind Microbiol Biotechnol. 2017 08; 44(8):1237-1244. PMID: 28509952.
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    82. Mark KMK, Varn FS, Ung MH, Qian F, Cheng C. The E2F4 prognostic signature predicts pathological response to neoadjuvant chemotherapy in breast cancer patients. BMC Cancer. 2017 05 02; 17(1):306. PMID: 28464832.
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    174. Zhen Y, Liu Z, Yang H, Yu X, Wu Q, Hua S, Long X, Jiang Q, Song Y, Cheng C, Wang H, Zhao M, Fu Q, Lyu X, Chen Y, Fan Y, Liu Y, Li X, Fang W. Tumor suppressor PDCD4 modulates miR-184-mediated direct suppression of C-MYC and BCL2 blocking cell growth and survival in nasopharyngeal carcinoma. Cell Death Dis. 2013 Oct 24; 4:e872. PMID: 24157866.
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    175. Li D, Sulovari A, Cheng C, Zhao H, Kranzler HR, Gelernter J. Association of gamma-aminobutyric acid A receptor a2 gene (GABRA2) with alcohol use disorder. Neuropsychopharmacology. 2014 Mar; 39(4):907-18. PMID: 24136292.
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    176. Grant GD, Brooks L, Zhang X, Mahoney JM, Martyanov V, Wood TA, Sherlock G, Cheng C, Whitfield ML. Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors. Mol Biol Cell. 2013 Dec; 24(23):3634-50. PMID: 24109597.
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    177. Shi H, Huang Y, Cheng C, Ji G, Yang Y, Yuan H. Preparation and characterization of chain-like and peanut-like Fe3O4@SiO2 core-shell structure. J Nanosci Nanotechnol. 2013 Oct; 13(10):6953-60. PMID: 24245170.
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    178. Cheng C, Cai Z, Peng XS, Wong HN. Enantiomeric recognition of amino acid salts by macrocyclic crown ethers derived from enantiomerically pure 1,8,9,16-tetrahydroxytetraphenylenes. J Org Chem. 2013 Sep 06; 78(17):8562-73. PMID: 23927033.
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    179. Cheng C, Fu Y, Shen L, Gerstein M. Identification of yeast cell cycle regulated genes based on genomic features. BMC Syst Biol. 2013 Jul 29; 7:70. PMID: 23895232.
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    180. Zhu M, Liu CC, Cheng C. REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer. BMC Genomics. 2013 Jul 26; 14:504. PMID: 23885756.
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    181. Liu CM, Zheng GH, Cheng C, Sun JM. Quercetin protects mouse brain against lead-induced neurotoxicity. J Agric Food Chem. 2013 Aug 07; 61(31):7630-5. PMID: 23855546.
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    182. Cheng C, Ung M, Grant GD, Whitfield ML. Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs. PLoS Comput Biol. 2013; 9(7):e1003132. PMID: 23874175.
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    183. Yin J, Wu N, Zeng F, Cheng C, Kang K, Yang H. Paeonol induces apoptosis in human ovarian cancer cells. Acta Histochem. 2013 Oct; 115(8):835-9. PMID: 23768958.
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    184. Artinger EL, Mishra BP, Zaffuto KM, Li BE, Chung EK, Moore AW, Chen Y, Cheng C, Ernst P. An MLL-dependent network sustains hematopoiesis. Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29):12000-5. PMID: 23744037.
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    185. Gao SG, Zeng C, Li LJ, Luo W, Zhang FJ, Tian J, Cheng C, Tu M, Xiong YL, Jiang W, Xu M, Lei GH. Correlation between senescence-associated beta-galactosidase expression in articular cartilage and disease severity of patients with knee osteoarthritis. Int J Rheum Dis. 2016 Mar; 19(3):226-32. PMID: 26112901.
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    186. Zhang J, Shao C, Wang J, Cheng C, Zuo C, Sun G, Cui B, Dong A, Liu Q, Kong L. Autoimmune pancreatitis: whole-body 18F-FDG PET/CT findings. Abdom Imaging. 2013 Jun; 38(3):543-9. PMID: 23223832.
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    187. Yip KY, Cheng C, Gerstein M. Machine learning and genome annotation: a match meant to be? Genome Biol. 2013 May 29; 14(5):205. PMID: 23731483.
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    188. Yang CC, Buck MJ, Chen MH, Chen YF, Lan HC, Chen JJ, Cheng C, Liu CC. Discovering chromatin motifs using FAIRE sequencing and the human diploid genome. BMC Genomics. 2013 May 08; 14:310. PMID: 23656909.
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    189. Lu X, Cheng C, Wang G, Shu X, Ma J, Tong Q. Synergistic enhancement of cancer therapy using a combination of fusion protein MG7-scFv/SEB and tumor necrosis factor alpha. Protein Pept Lett. 2013 Apr; 20(4):467-72. PMID: 23016583.
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    190. Dong A, Wang Y, Dong H, Zhang J, Cheng C, Zuo C. FDG PET/CT findings of solid pseudopapillary tumor of the pancreas with CT and MRI correlation. Clin Nucl Med. 2013 Mar; 38(3):e118-24. PMID: 23354028.
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    191. Liu CM, Zheng GH, Ming QL, Sun JM, Cheng C. Protective effect of puerarin on lead-induced mouse cognitive impairment via altering activities of acetyl cholinesterase, monoamine oxidase and nitric oxide synthase. Environ Toxicol Pharmacol. 2013 May; 35(3):502-10. PMID: 23501611.
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    192. Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A comprehensive nuclear receptor network for breast cancer cells. Cell Rep. 2013 Feb 21; 3(2):538-51. PMID: 23375374.
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    193. Liu Z, Long Y, Zhang Y, Huang W, Long X, Yang H, Long J, Cheng C, Fang W. Nuclear p27 expression confers a favorable outcome for nasopharyngeal carcinoma patients. Dis Markers. 2013; 35(6):925-32. PMID: 24427780.
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    194. Yip KY, Cheng C, Bhardwaj N, Brown JB, Leng J, Kundaje A, Rozowsky J, Birney E, Bickel P, Snyder M, Gerstein M. Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol. 2012 Sep 26; 13(9):R48. PMID: 22950945.
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    195. Luo CQ, Yeung SC, Liu ZG, Meng J, Zhong FT, Cheng C. Pulmonary well-differentiated fetal adenocarcinoma with platelet-derived growth factor receptor (PDGFR)a expression. Cancer Biol Ther. 2012 Dec; 13(14):1384-9. PMID: 22986233.
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    196. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 06; 489(7414):57-74. PMID: 22955616.
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    197. Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Architecture of the human regulatory network derived from ENCODE data. Nature. 2012 Sep 06; 489(7414):91-100. PMID: 22955619.
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    198. Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y, Davis CA, Carninci P, Lassman T, Gingeras TR, Guigó R, Birney E, Weng Z, Snyder M, Gerstein M. Understanding transcriptional regulation by integrative analysis of transcription factor binding data. Genome Res. 2012 Sep; 22(9):1658-67. PMID: 22955978.
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    199. Yang H, Lei C, Cheng C, Feng Y, Zhang W, Petracco RG, Sak S. The antiapoptotic effect of galectin-3 in human endometrial cells under the regulation of estrogen and progesterone. Biol Reprod. 2012 Aug; 87(2):39. PMID: 22674388.
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    200. Wang F, Mi YJ, Chen XG, Wu XP, Liu Z, Chen SP, Liang YJ, Cheng C, To KK, Fu LW. Axitinib targeted cancer stemlike cells to enhance efficacy of chemotherapeutic drugs via inhibiting the drug transport function of ABCG2. Mol Med. 2012 Jul 18; 18:887-98. PMID: 22549112.
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    201. Liu CM, Sun YZ, Sun JM, Ma JQ, Cheng C. Protective role of quercetin against lead-induced inflammatory response in rat kidney through the ROS-mediated MAPKs and NF-?B pathway. Biochim Biophys Acta. 2012 Oct; 1820(10):1693-703. PMID: 22728154.
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    202. Cheng C, Liu ZG, Zhang H, Xie JD, Chen XG, Zhao XQ, Wang F, Liang YJ, Chen LK, Singh S, Chen JJ, Talele TT, Chen ZS, Zhong FT, Fu LW. Enhancing chemosensitivity in ABCB1- and ABCG2-overexpressing cells and cancer stem-like cells by an Aurora kinase inhibitor CCT129202. Mol Pharm. 2012 Jul 02; 9(7):1971-82. PMID: 22632055.
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    203. Dong X, Greven MC, Kundaje A, Djebali S, Brown JB, Cheng C, Gingeras TR, Gerstein M, Guigó R, Birney E, Weng Z. Modeling gene expression using chromatin features in various cellular contexts. Genome Biol. 2012 Jun 13; 13(9):R53. PMID: 22950368.
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    204. Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M. Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. PLoS Comput Biol. 2011 Nov; 7(11):e1002190. PMID: 22125477.
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    205. Yang H, Cheng C, Zhang W. Average rank-based score to measure deregulation of molecular pathway gene sets. PLoS One. 2011; 6(11):e27579. PMID: 22096597.
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    206. Cheng C, Shou C, Yip KY, Gerstein MB. Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors. Genome Biol. 2011 Nov 07; 12(11):R111. PMID: 22060676.
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    207. Cheng C, Min R, Gerstein M. TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles. Bioinformatics. 2011 Dec 01; 27(23):3221-7. PMID: 22039215.
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    208. Ye L, Xu A, Cheng C, Zhang L, Huo C, Huang F, Xu H, Li R. Design and synthesis of affinity ligands and relation of their structure with adsorption of proteins. J Sep Sci. 2011 Nov; 34(22):3145-50. PMID: 22015803.
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    209. Cheng C, Gerstein M. Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells. Nucleic Acids Res. 2012 Jan; 40(2):553-68. PMID: 21926158.
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    210. Yang H, Taylor HS, Lei C, Cheng C, Zhang W. Hormonal regulation of galectin 3 in trophoblasts and its effects on endometrium. Reprod Sci. 2011 Nov; 18(11):1118-27. PMID: 21555510.
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    211. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011 Apr; 9(4):e1001046. PMID: 21526222.
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    212. Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24; 471(7339):527-31. PMID: 21430782.
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    213. Cheng C, Yan KK, Yip KY, Rozowsky J, Alexander R, Shou C, Gerstein M. A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. Genome Biol. 2011; 12(2):R15. PMID: 21324173.
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    214. Pang K, Cheng C, Xuan Z, Sheng H, Ma X. Understanding protein evolutionary rate by integrating gene co-expression with protein interactions. BMC Syst Biol. 2010 Dec 30; 4:179. PMID: 21190591.
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    215. Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87. PMID: 21177976.
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    216. Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 2011 Feb; 21(2):276-85. PMID: 21177971.
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    217. Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, Gerstein M, Snyder M, Reinke V. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Res. 2011 Feb; 21(2):245-54. PMID: 21177963.
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    218. Ye L, Zhang H, Xu H, Zou Q, Cheng C, Dong D, Xu Y, Li R. Phenazine-1-carboxylic acid derivatives: design, synthesis and biological evaluation against Rhizoctonia solani Kuhn. Bioorg Med Chem Lett. 2010 Dec 15; 20(24):7369-71. PMID: 21055934.
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    219. Lu X, Cheng C, Zhu S, Yang Y, Zheng L, Wang G, Shu X, Wu K, Liu K, Tong Q. SATB1 is an independent prognostic marker for gastric cancer in a Chinese population. Oncol Rep. 2010 Oct; 24(4):981-7. PMID: 20811679.
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    220. Cheng C, Lu X, Wang G, Zheng L, Shu X, Zhu S, Liu K, Wu K, Tong Q. Expression of SATB1 and heparanase in gastric cancer and its relationship to clinicopathologic features. APMIS. 2010 Nov; 118(11):855-63. PMID: 20955458.
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    221. Khurana E, Lam HY, Cheng C, Carriero N, Cayting P, Gerstein MB. Segmental duplications in the human genome reveal details of pseudogene formation. Nucleic Acids Res. 2010 Nov; 38(20):6997-7007. PMID: 20615899.
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    222. Lee Y, Yang X, Huang Y, Fan H, Zhang Q, Wu Y, Li J, Hasina R, Cheng C, Lingen MW, Gerstein MB, Weichselbaum RR, Xing HR, Lussier YA. Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. PLoS Comput Biol. 2010 Apr 01; 6(4):e1000730. PMID: 20369013.
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    223. Pan J, Cheng C, Verstovsek S, Chen Q, Jin Y, Cao Q. The BH3-mimetic GX15-070 induces autophagy, potentiates the cytotoxicity of carboplatin and 5-fluorouracil in esophageal carcinoma cells. Cancer Lett. 2010 Jul 28; 293(2):167-74. PMID: 20153924.
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    224. Zou Y, Cheng C, Omura-Minamisawa M, Kang Y, Hara T, Guan X, Inoue T. The suppression of hypoxia-inducible factor and vascular endothelial growth factor by siRNA does not affect the radiation sensitivity of multicellular tumor spheroids. J Radiat Res. 2010; 51(1):47-55. PMID: 19959878.
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    225. Wang Y, Huang Y, Wang J, Cheng C, Huang W, Lu P, Xu YN, Wang P, Yan N, Shi Y. Structure of the formate transporter FocA reveals a pentameric aquaporin-like channel. Nature. 2009 Nov 26; 462(7272):467-72. PMID: 19940917.
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    226. Ge H, Wei M, Fabrizio P, Hu J, Cheng C, Longo VD, Li LM. Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant. Nucleic Acids Res. 2010 Jan; 38(1):143-58. PMID: 19880387.
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    227. Cheng C, Bhardwaj N, Gerstein M. The relationship between the evolution of microRNA targets and the length of their UTRs. BMC Genomics. 2009 Sep 14; 10:431. PMID: 19751524.
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    228. Cheng C, Fu X, Alves P, Gerstein M. mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. Genome Biol. 2009; 10(9):R90. PMID: 19723326.
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    229. Cheng C, Li LM, Alves P, Gerstein M. Systematic identification of transcription factors associated with patient survival in cancers. BMC Genomics. 2009 May 15; 10:225. PMID: 19442316.
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    230. Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ. Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization. Genes Dev. 2009 Mar 01; 23(5):619-32. PMID: 19240126.
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    231. Shi X, Jin Y, Cheng C, Zhang H, Zou W, Zheng Q, Lu Z, Chen Q, Lai Y, Pan J. Triptolide inhibits Bcr-Abl transcription and induces apoptosis in STI571-resistant chronic myelogenous leukemia cells harboring T315I mutation. Clin Cancer Res. 2009 Mar 01; 15(5):1686-97. PMID: 19240172.
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    232. Pan J, Song E, Cheng C, Lee MH, Yeung SC. Farnesyltransferase inhibitors-induced autophagy: alternative mechanisms? Autophagy. 2009 Jan; 5(1):129-31. PMID: 19066466.
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    233. Wang G, Zhou Z, Cheng C, Yao J, Yang Z. Osthol and isopimpinellin from Fructus cnidii for the control of Dactylogyrus intermedius in Carassius auratus. Vet Parasitol. 2008 Nov 25; 158(1-2):144-51. PMID: 18940522.
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    234. Hara T, Omura-Minamisawa M, Kang Y, Cheng C, Inoue T. Flavopiridol potentiates the cytotoxic effects of radiation in radioresistant tumor cells in which p53 is mutated or Bcl-2 is overexpressed. Int J Radiat Oncol Biol Phys. 2008 Aug 01; 71(5):1485-95. PMID: 18640498.
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    235. Zhang J, Cheng C, He CL, Zhou YJ, Cao Y. The expression of Bcl-XL, Bcl-XS and p27Kip1 in topotecan-induced apoptosis in hepatoblastoma HepG2 cell line. Cancer Invest. 2008 Jun; 26(5):456-63. PMID: 18568767.
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    236. Jie G, Zhang J, Wang D, Cheng C, Chen HY, Zhu JJ. Electrochemiluminescence immunosensor based on CdSe nanocomposites. Anal Chem. 2008 Jun 01; 80(11):4033-9. PMID: 18435547.
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    237. Cheng C, Li LM. Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS One. 2008 Apr 23; 3(4):e1989. PMID: 18431476.
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    238. Ge H, Cheng C, Li LM. A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays. BMC Bioinformatics. 2008 Apr 14; 9:194. PMID: 18410691.
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    239. Cheng C, Li LM. Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics. 2008 Mar 03; 9:116. PMID: 18315882.
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    240. Wei M, Fabrizio P, Hu J, Ge H, Cheng C, Li L, Longo VD. Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9. PLoS Genet. 2008 Jan; 4(1):e13. PMID: 18225956.
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    241. Cheng C, Yan X, Sun F, Li LM. Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics. 2007 Nov 16; 8:452. PMID: 18021409.
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    242. Chen L, Zhao YL, Liu Q, Cheng C, Piao CR. Domino reaction of alpha-acetyl-alpha-carbamoyl ketene dithioacetals with Vilsmeier reagents: a novel and efficient synthesis of 4-halogenated 2(1H)-pyridinones. J Org Chem. 2007 Nov 23; 72(24):9259-63. PMID: 17975931.
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    243. Cheng C, Fabrizio P, Ge H, Wei M, Longo VD, Li LM. Significant and systematic expression differentiation in long-lived yeast strains. PLoS One. 2007 Oct 31; 2(10):e1095. PMID: 17971858.
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    244. Cheng C, Fabrizio P, Ge H, Longo VD, Li LM. Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics. 2007 Jul 06; 8:219. PMID: 17617911.
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    245. Cheng C, Ma X, Yan X, Sun F, Li LM. MARD: a new method to detect differential gene expression in treatment-control time courses. Bioinformatics. 2006 Nov 01; 22(21):2650-7. PMID: 16928738.
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    246. Fabrizio P, Gattazzo C, Battistella L, Wei M, Cheng C, McGrew K, Longo VD. Sir2 blocks extreme life-span extension. Cell. 2005 Nov 18; 123(4):655-67. PMID: 16286010.
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    247. Cheng C, Li LM. Sub-array normalization subject to differentiation. Nucleic Acids Res. 2005; 33(17):5565-73. PMID: 16204457.
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    248. Gu LJ, Wu YL, Feng WN, Weng YM, Cheng C, Zhong WZ, Huang SH, Yang P. [Treatment of non-small-cell lung cancer with paraplatin given by two different dosage calculation methods]. Zhonghua Zhong Liu Za Zhi. 2005 Jan; 27(1):29-32. PMID: 15771794.
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    249. Cheng H, Wu Y, Gu L, Feng W, Weng Y, Cheng C, Zhong W, Huang S. [The preliminary results of a phase II randomized clinical trial of high-dose toremifene chemosensitization in stage IIIB/IV non-small cell lung cancer]. Zhongguo Fei Ai Za Zhi. 2003 Oct 20; 6(5):335-8. PMID: 21306673.
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    250. Ye X, Ji C, Huang Q, Cheng C, Tang R, Xu J, Zeng L, Dai J, Wu Q, Gu S, Xie Y, Mao Y. Isolation and characterization of a human putative receptor protein kinase cDNA STYK1. Mol Biol Rep. 2003 Jun; 30(2):91-6. PMID: 12841579.
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    251. Ye X, Xu J, Cheng C, Yin G, Zeng L, Ji C, Gu S, Xie Y, Mao Y. Isolation and characterization of a novel human putative anemia-related gene homologous to mouse sideroflexin. Biochem Genet. 2003 Apr; 41(3-4):119-25. PMID: 12670026.
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    252. Cheng C, Xu J, Ye X, Dai J, Wu Q, Zeng L, Wang L, Zhao W, Ji C, Gu S, Xie Y, Mao Y. Cloning, expression and characterization of a novel human VMP gene. Mol Biol Rep. 2002 Sep; 29(3):281-6. PMID: 12463420.
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    253. Cheng C, Zhou ZX, Xu M, Zhao W, Xu J, Zeng L, Huang Y, Wu QH, Dai JF, Ying K, Xie Y, Mao YM. [Tumor relevance analysis of a highly conserved gene by using gene microarray hybridization]. Yi Chuan. 2002 May; 24(3):227-31. PMID: 16126669.
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    254. Cheng C, Ying K, Xu M, Zhao W, Zhou Z, Huang Y, Wang W, Xu J, Zeng L, Xie Y, Mao Y. Cloning and characterization of a novel human transcription factor AP-2 beta like gene (TFAP2BL1). Int J Biochem Cell Biol. 2002 Jan; 34(1):78-86. PMID: 11733187.
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    255. Wang W, Huang Y, Zhou Z, Tang R, Zhao W, Zeng L, Xu M, Cheng C, Gu S, Ying K, Xie Y, Mao Y. Identification and characterization of AGTRAP, a human homolog of murine Angiotensin II Receptor-Associated Protein (Agtrap). Int J Biochem Cell Biol. 2002 Jan; 34(1):93-102. PMID: 11733189.
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    256. Xu J, Zhou Z, Zeng L, Huang Y, Zhao W, Cheng C, Xu M, Xie Y, Mao Y. Cloning, expression and characterization of a novel human REPS1 gene. Biochim Biophys Acta. 2001 Dec 03; 1522(2):118-21. PMID: 11750063.
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    257. Xu M, Zhou Z, Cheng C, Zhao W, Tang R, Huang Y, Wang W, Xu J, Zeng L, Xie Y, Mao Y. Cloning and characterization of a novel human TEKTIN1 gene. Int J Biochem Cell Biol. 2001 Dec; 33(12):1172-82. PMID: 11606253.
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    258. Wu Q, Xu M, Cheng C, Zhou Z, Huang Y, Zhao W, Zeng L, Xu J, Fu X, Ying K, Xie Y, Mao Y. Molecular cloning and characterization of a novel Dehydrogenase/reductase (SDR family) member 1 genea from human fetal brain. Mol Biol Rep. 2001; 28(4):193-8. PMID: 12153138.
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    259. Zeng L, Zhou Z, Xu J, Zhao W, Wang W, Huang Y, Cheng C, Xu M, Xie Y, Mao Y. Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain. Cytogenet Cell Genet. 2001; 95(1-2):43-7. PMID: 11978968.
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    260. Huang Y, Tang R, Dai J, Gu S, Zhao W, Cheng C, Xu M, Zhou Z, Ying K, Xi Y, Mao Y. A novel human hydroxysteroid dehydrogenase like 1 gene (HSDL1) is highly expressed in reproductive tissues. Mol Biol Rep. 2001; 28(4):185-91. PMID: 12153137.
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