CHAO CHENG

TitleSenior Faculty
InstitutionBaylor College of Medicine
DepartmentDepartment of Medicine
AddressOne Baylor Plaza
Houston, TX 77030
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    R21CA227996     (CHENG, CHAO)Apr 1, 2019 - Mar 31, 2021
    NIH/NCI
    Computational Identification of new candidate drugs for lung cancer treatment
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Cheng C, Haider J, Liu P, Yang J, Tan Z, Huang T, Lin J, Jiang M, Liu H, Zhu L. Engineered LPMO Significantly Boosting Cellulase-Catalyzed Depolymerization of Cellulose. J Agric Food Chem. 2020 Dec 23; 68(51):15257-15266. PMID: 33290065.
      Citations:    Fields:    
    2. Zhou E, Zhang B, Zhu K, Schaafsma E, Kumar RD, Cheng C. A TMPRSS2-ERG gene signature predicts prognosis of patients with prostate adenocarcinoma. Clin Transl Med. 2020 Dec; 10(8):e216. PMID: 33377652.
      Citations:    
    3. Liu Z, Yin J, Zhou Q, Yang J, Zeng B, Yeung SJ, Shen J, Cheng C. Survival after pulmonary metastasectomy for relapsed osteosarcoma. J Thorac Cardiovasc Surg. 2020 Nov 24. PMID: 33349447.
      Citations:    Fields:    
    4. Schaafsma E, Zhao Y, Zhang L, Li Y, Cheng C. MYC Activity Inference Captures Diverse Mechanisms of Aberrant MYC Pathway Activation in Human Cancers. Mol Cancer Res. 2020 Nov 24. PMID: 33234576.
      Citations:    Fields:    
    5. Cheng C, Hu S, Han Y, Xia D, Huang BL, Wu W, Hussain J, Zhang X, Huang B. Yellow nutsedge WRI4-like gene improves drought tolerance in Arabidopsis thaliana by promoting cuticular wax biosynthesis. BMC Plant Biol. 2020 Oct 31; 20(1):498. PMID: 33129252.
      Citations:    Fields:    
    6. Wu M, Chen Y, Xia H, Wang C, Tan CY, Cai X, Liu Y, Ji F, Xiong P, Liu R, Guan Y, Duan Y, Kuang D, Xu S, Cai H, Xia Q, Yang D, Wang MW, Chiu IM, Cheng C, Ahern PP, Liu L, Wang G, Surana NK, Xia T, Kasper DL. Transcriptional and proteomic insights into the host response in fatal COVID-19 cases. Proc Natl Acad Sci U S A. 2020 11 10; 117(45):28336-28343. PMID: 33082228.
      Citations: 2     Fields:    Translation:HumansCells
    7. ElTanbouly MA, Schaafsma E, Smits NC, Shah P, Cheng C, Burns C, Blazar BR, Noelle RJ, Mabaera R. VISTA Re-programs Macrophage Biology Through the Combined Regulation of Tolerance and Anti-inflammatory Pathways. Front Immunol. 2020; 11:580187. PMID: 33178206.
      Citations:    Fields:    
    8. Wang X, Gou L, Gao Y, Huang Y, Kuai R, Li Y, Wang Y, Chen Y, Li J, Cheng C, Feng Z, Wu X, Yao R. RalA exerts an inhibitory effect on IL-1ß/IL-18 secretion by blocking NLRP3 inflammasome activation in levornidazole-treated human THP-1 macrophages. Int Immunopharmacol. 2020 Nov; 88:106898. PMID: 32866784.
      Citations:    Fields:    
    9. Cheng C, Zhang F. Correspondence on: 'Interleukin-6 blockade with sarilumab in severe COVID-19 pneumonia with systemic hyperinflammation-an open-label cohort study' by Della-Torre et al. Ann Rheum Dis. 2020 Aug 19. PMID: 32816698.
      Citations:    Fields:    
    10. Gao J, Yang M, Liu L, Guo S, Li Y, Cheng C. The aggressive surgical treatment and outcome of a colon cancer patient with COVID-19 in Wuhan, China. BMC Gastroenterol. 2020 Aug 14; 20(1):269. PMID: 32799796.
      Citations:    Fields:    Translation:HumansCellsPHPublic Health
    11. Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, Ung M, Ma L, Yu S, Cao Q, Harmanci A, Yan KK, Sethi A, Gürsoy G, Schoenberg MR, Rozowsky J, Warrell J, Emani P, Yang YT, Galeev T, Kong X, Liu S, Li X, Krishnan J, Feng Y, Rivera-Mulia JC, Adrian J, Broach JR, Bolt M, Moran J, Fitzgerald D, Dileep V, Liu T, Mei S, Sasaki T, Trevilla-Garcia C, Wang S, Wang Y, Zang C, Wang D, Klein RJ, Snyder M, Gilbert DM, Yip K, Cheng C, Yue F, Liu XS, White KP, Gerstein M. An integrative ENCODE resource for cancer genomics. Nat Commun. 2020 07 29; 11(1):3696. PMID: 32728046.
      Citations: 2     Fields:    Translation:HumansCells
    12. Zhao Y, Schaafsma E, Cheng C. Gene signature-based prediction of triple-negative breast cancer patient response to Neoadjuvant chemotherapy. Cancer Med. 2020 Sep; 9(17):6281-6295. PMID: 32692484.
      Citations:    Fields:    
    13. Zhang ZF, Huang TJ, Zhang XK, Xie YJ, Lin ST, Luo FF, Meng DF, Hu H, Wang J, Peng LX, Qian CN, Cheng C, Huang BJ. AKR1C2 acts as a targetable oncogene in esophageal squamous cell carcinoma via activating PI3K/AKT signaling pathway. J Cell Mol Med. 2020 Sep; 24(17):9999-10012. PMID: 32678482.
      Citations:    Fields:    
    14. Cheng C, Yang H, Liu J, Zhou Z. Does Nonsteroidal Antiinflammatory Drug Use Contribute Substantially to the Osteoarthritis-Cardiovascular Disease Association? Comment on the Article by Atiquzzaman et al. Arthritis Rheumatol. 2020 09; 72(9):1582-1583. PMID: 32662589.
      Citations:    Fields:    Translation:Humans
    15. Li Y, Lv Y, Cheng C, Huang Y, Yang L, He J, Tao X, Hu Y, Ma Y, Su Y, Wu L, Yu G, Jiang Q, Liu S, Liu X, Liu Z. SPEN induces miR-4652-3p to target HIPK2 in nasopharyngeal carcinoma. Cell Death Dis. 2020 07 02; 11(7):509. PMID: 32641685.
      Citations: 1     Fields:    
    16. Yang W, You N, Jia M, Yeung SJ, Ou W, Yu M, Wang Y, Fu X, Zhang Z, Yang J, Lao Z, Liu Z, Zeng B, Ou Q, Wu X, Shao YW, Hong X, Wang S, Cheng C. Undetectable circulating tumor DNA levels correlate with low risk of recurrence/metastasis in postoperative pathologic stage I lung adenocarcinoma patients. Lung Cancer. 2020 08; 146:327-334. PMID: 32623075.
      Citations: 2     Fields:    
    17. Pang K, Wang L, Wang W, Zhou J, Cheng C, Han K, Zoghbi HY, Liu Z. Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders. Genome Res. 2020 06; 30(6):835-848. PMID: 32554779.
      Citations: 1     Fields:    
    18. Yu F, Zhang Y, Cheng C, Wang W, Zhou Z, Rang W, Yu H, Wei Y, Wu Q, Zhang Y. Poly(A)-seq: A method for direct sequencing and analysis of the transcriptomic poly(A)-tails. PLoS One. 2020; 15(6):e0234696. PMID: 32544193.
      Citations: 1     Fields:    Translation:HumansCells
    19. Wang X, Gao Y, Li Y, Huang Y, Zhu Y, Lv W, Wang R, Gou L, Cheng C, Feng Z, Xie J, Tian J, Yao R. Roseotoxin B alleviates cholestatic liver fibrosis through inhibiting PDGF-B/PDGFR-ß pathway in hepatic stellate cells. Cell Death Dis. 2020 06 15; 11(6):458. PMID: 32541811.
      Citations: 2     Fields:    
    20. Xu G, Zhou CS, Tang WZ, Xu J, Xu G, Cheng C, Wang LD, Ding KH. Local Administration of Methylcobalamin for Subacute Ophthalmic Herpetic Neuralgia: A Randomized, Phase III Clinical Trial. Pain Pract. 2020 11; 20(8):838-849. PMID: 32372561.
      Citations:    Fields:    
    21. Cheng C, Zhao Y, Schaafsma E, Weng YL, Amos C. An EGFR signature predicts cell line and patient sensitivity to multiple tyrosine kinase inhibitors. Int J Cancer. 2020 Nov 01; 147(9):2621-2633. PMID: 32406930.
      Citations:    Fields:    
    22. Zhong J, Luo X, Huang Z, Qiu S, Cheng C, Yang L, Yi X, Zeng J, Liu D. [The significance of evaluation of sleep respiration in infants with Pierre Robin sequence]. Lin Chung Er Bi Yan Hou Tou Jing Wai Ke Za Zhi. 2020 Jun; 34(6):496-498. PMID: 32842177.
      Citations:    Fields:    Translation:Humans
    23. Liu M, Cheng C, Li X, Zhou S, Hua J, Huang J, Li Y, Yang K, Zhang P, Zhang Y, Tian J. Luteolin alleviates ochratoxin A induced oxidative stress by regulating Nrf2 and HIF-1a pathways in NRK-52E rat kidney cells. Food Chem Toxicol. 2020 Jul; 141:111436. PMID: 32439592.
      Citations: 1     Fields:    
    24. Wang L, Luo X, Cheng C, Amos CI, Cai G, Xiao F. A gene expression-based immune signature for lung adenocarcinoma prognosis. Cancer Immunol Immunother. 2020 Sep; 69(9):1881-1890. PMID: 32372138.
      Citations:    Fields:    Translation:HumansCells
    25. Zhao Y, Pan Y, Cheng C, Zheng D, Zhang Y, Gao Z, Fu F, Li H, Zheng S, Zhuge L, Mao H, Kuang M, Tao X, Peng Y, Hu H, Xiang J, Li Y, Sun Y, Chen H. EGFR-mutant lung adenocarcinoma harboring co-mutational tumor suppressor genes predicts poor prognosis. J Cancer Res Clin Oncol. 2020 Jul; 146(7):1781-1789. PMID: 32361787.
      Citations: 1     Fields:    Translation:Humans
    26. Ung M, Schaafsma E, Mattox D, Wang GL, Cheng C. Pan-cancer systematic identification of lncRNAs associated with cancer prognosis. PeerJ. 2020; 8:e8797. PMID: 32231885.
      Citations:    
    27. Ding Z, Lu W, Dai C, Huang W, Liu F, Shan W, Cheng C, Xu J, Yin Z, He W. The CRD of Frizzled 7 exhibits chondroprotective effects in osteoarthritis via inhibition of the canonical Wnt3a/ß-catenin signaling pathway. Int Immunopharmacol. 2020 Mar 06; 82:106367. PMID: 32151961.
      Citations:    Fields:    
    28. Schaafsma E, Zhao Y, Wang Y, Varn FS, Zhu K, Yang H, Cheng C. Whole transcriptome signature for prognostic prediction (WTSPP): application of whole transcriptome signature for prognostic prediction in cancer. Lab Invest. 2020 10; 100(10):1356-1366. PMID: 32144347.
      Citations:    Fields:    Translation:HumansCells
    29. He X, Qin C, Zhao Y, Zou L, Zhao H, Cheng C. Gene signatures associated with genomic aberrations predict prognosis in neuroblastoma. Cancer Commun (Lond). 2020 03; 40(2-3):105-118. PMID: 32237073.
      Citations: 3     Fields:    
    30. Liu J, Cheng C, Jiao J, Huang W, Huang J, Sun J, Shao J. MircoRNA-129-5p suppresses the development of glioma by targeting HOXC10. Pathol Res Pract. 2020 Apr; 216(4):152868. PMID: 32111444.
      Citations:    
    31. ElTanbouly MA, Zhao Y, Nowak E, Li J, Schaafsma E, Le Mercier I, Ceeraz S, Lines JL, Peng C, Carriere C, Huang X, Day M, Koehn B, Lee SW, Silva Morales M, Hogquist KA, Jameson SC, Mueller D, Rothstein J, Blazar BR, Cheng C, Noelle RJ. VISTA is a checkpoint regulator for naïve T cell quiescence and peripheral tolerance. Science. 2020 01 17; 367(6475). PMID: 31949051.
      Citations: 12     Fields:    Translation:AnimalsCells
    32. Xie F, Zhang J, Wang J, Reuben A, Xu W, Yi X, Varn FS, Ye Y, Cheng J, Yu M, Wang Y, Liu Y, Xie M, Du P, Ma K, Ma X, Zhou P, Yang S, Chen Y, Wang G, Xia X, Liao Z, Heymach JV, Wistuba II, Futreal PA, Ye K, Cheng C, Xia T. Multifactorial Deep Learning Reveals Pan-Cancer Genomic Tumor Clusters with Distinct Immunogenomic Landscape and Response to Immunotherapy. Clin Cancer Res. 2020 06 15; 26(12):2908-2920. PMID: 31911545.
      Citations: 2     Fields:    
    33. Qin C, He X, Zhao Y, Tong CY, Zhu KY, Sun Y, Cheng C. Systematic computational identification of prognostic cytogenetic markers in neuroblastoma. BMC Med Genomics. 2019 12 12; 12(1):192. PMID: 31831008.
      Citations:    Fields:    Translation:Humans
    34. Feng WW, Wilkins O, Bang S, Ung M, Li J, An J, Del Genio C, Canfield K, DiRenzo J, Wells W, Gaur A, Robey RB, Guo JY, Powles RL, Sotiriou C, Pusztai L, Febbraio M, Cheng C, Kinlaw WB, Kurokawa M. CD36-Mediated Metabolic Rewiring of Breast Cancer Cells Promotes Resistance to HER2-Targeted Therapies. Cell Rep. 2019 12 10; 29(11):3405-3420.e5. PMID: 31825825.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    35. Huang W, Zhang L, Cheng C, Shan W, Ma R, Yin Z, Zhu C. Parallel comparison of fibroblast-like synoviocytes from the surgically removed hyperplastic synovial tissues of rheumatoid arthritis and osteoarthritis patients. BMC Musculoskelet Disord. 2019 Dec 07; 20(1):591. PMID: 31812161.
      Citations: 1     Fields:    Translation:HumansCells
    36. Schaafsma E, Yuan Y, Zhao Y, Cheng C. Computational STAT3 activity inference reveals its roles in the pancreatic tumor microenvironment. Sci Rep. 2019 12 03; 9(1):18257. PMID: 31796877.
      Citations:    Fields:    Translation:Humans
    37. Chen H, Carrot-Zhang J, Zhao Y, Hu H, Freeman SS, Yu S, Ha G, Taylor AM, Berger AC, Westlake L, Zheng Y, Zhang J, Ramachandran A, Zheng Q, Pan Y, Zheng D, Zheng S, Cheng C, Kuang M, Zhou X, Zhang Y, Li H, Ye T, Ma Y, Gao Z, Tao X, Han H, Shang J, Yu Y, Bao D, Huang Y, Li X, Zhang Y, Xiang J, Sun Y, Li Y, Cherniack AD, Campbell JD, Shi L, Meyerson M. Genomic and immune profiling of pre-invasive lung adenocarcinoma. Nat Commun. 2019 11 29; 10(1):5472. PMID: 31784532.
      Citations: 10     Fields:    Translation:Humans
    38. Liu F, Li L, Lu W, Ding Z, Huang W, Li YT, Cheng C, Shan WS, Xu J, He W, Yin Z. Scutellarin ameliorates cartilage degeneration in osteoarthritis by inhibiting the Wnt/ß-catenin and MAPK signaling pathways. Int Immunopharmacol. 2020 Jan; 78:105954. PMID: 31757676.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    39. Cheng C, Ma J, Wang J, Du Z, Li B, Wang J, Gao C, Zhu L. Toxicity comparison of three imidazolium bromide ionic liquids to soil microorganisms. Environ Pollut. 2019 Dec; 255(Pt 2):113321. PMID: 31610515.
      Citations:    Fields:    Translation:CellsPHPublic Health
    40. He J, Liu J, Zhu C, Dai T, Cai K, Zhang Z, Cheng C, Qiao K, Liu X, Wang G, Xu S, Yang R, Fan J, Li H, Jin J, Dong Q, Liang L, Ding J, He K, Liu Y, Ye J, Feng S, Jiang Y, Huang H, Zhang H, Liu Z, Feng X, Xia Z, Ma M, Duan Z, Huang T, Li Y, Shen Q, Tan W, Ma H, Sun Y, Chen C, Cui F, Wang W, Li J, Hao Z, Liu H, Liang W, Zou X, Liang H, Yang H, Li Y, Jiang S, Ng CSH, González-Rivas D, Pompeo E, Flores RM, Shargall Y, Ismail M, Bedetti B, Elkhouly AG, Ang K. Expert consensus on spontaneous ventilation video-assisted thoracoscopic surgery in primary spontaneous pneumothorax (Guangzhou). Ann Transl Med. 2019 Oct; 7(20):518. PMID: 31807500.
      Citations:    
    41. He J, Liu J, Zhu C, Dai T, Cai K, Zhang Z, Cheng C, Qiao K, Liu X, Wang G, Xu S, Yang R, Fan J, Li H, Jin J, Dong Q, Liang L, Ding J, He K, Liu Y, Ye J, Feng S, Jiang Y, Huang H, Zhang H, Liu Z, Feng X, Xia Z, Ma M, Duan Z, Huang T, Li Y, Shen Q, Tan W, Ma H, Sun Y, Chen C, Cui F, Wang W, Li J, Hao Z, Liu H, Liang W, Zou X, Liang H, Yang H, Li Y, Jiang S, Ng CSH, González-Rivas D, Pompeo E, Flores RM, Shargall Y, Ismail M, Ambrogi V, Elkhouly AG, Sung SW, Ang K. Expert consensus on tubeless video-assisted thoracoscopic surgery (Guangzhou). J Thorac Dis. 2019 Oct; 11(10):4101-4108. PMID: 31737292.
      Citations:    
    42. Wang Y, Franks JM, Whitfield ML, Cheng C. BioMethyl: an R package for biological interpretation of DNA methylation data. Bioinformatics. 2019 10 01; 35(19):3635-3641. PMID: 30799505.
      Citations: 4     Fields:    Translation:Cells
    43. Shee K, Wells JD, Ung M, Hampsch RA, Traphagen NA, Yang W, Liu SC, Zeldenrust MA, Wang L, Kalari KR, Yu J, Boughey JC, Demidenko E, Kettenbach AN, Cheng C, Goetz MP, Miller TW. A Transcriptionally Definable Subgroup of Triple-Negative Breast and Ovarian Cancer Samples Shows Sensitivity to HSP90 Inhibition. Clin Cancer Res. 2020 01 01; 26(1):159-170. PMID: 31558472.
      Citations:    Fields:    Translation:HumansAnimalsCells
    44. Lu W, Ding Z, Liu F, Shan W, Cheng C, Xu J, He W, Huang W, Ma J, Yin Z. Dopamine delays articular cartilage degradation in osteoarthritis by negative regulation of the NF-?B and JAK2/STAT3 signaling pathways. Biomed Pharmacother. 2019 Nov; 119:109419. PMID: 31563117.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    45. Yang W, Tian ZK, Yang HX, Feng ZJ, Sun JM, Jiang H, Cheng C, Ming QL, Liu CM. Fisetin improves lead-induced neuroinflammation, apoptosis and synaptic dysfunction in mice associated with the AMPK/SIRT1 and autophagy pathway. Food Chem Toxicol. 2019 Dec; 134:110824. PMID: 31539617.
      Citations: 4     Fields:    Translation:AnimalsCells
    46. Wu Z, Zhu Z, Cheng C, Zhang J, Gong Y, Xu M, Li S, Zhao H. Terahertz spectroscopy of enantiomeric and racemic pyroglutamic acid. Spectrochim Acta A Mol Biomol Spectrosc. 2020 Jan 15; 225:117509. PMID: 31606660.
      Citations:    Fields:    
    47. Wang L, Ma G, Wang H, Cheng C, Mu S, Quan W, Jiang L, Zhao Z, Zhang Y, Zhang K, Wang X, Tian C, Zhang Y. A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells. Gigascience. 2019 09 01; 8(9). PMID: 31513708.
      Citations: 1     Fields:    Translation:AnimalsCells
    48. Hu Y, Yu L, Xia F, Liang F, Cheng C, Huang Y, Xiao L. Effect of laparoscopic myomectomy on serum levels of IL-6 and TAC, and ovarian function. Exp Ther Med. 2019 Nov; 18(5):3588-3594. PMID: 31602235.
      Citations:    
    49. Ren G, Zong S, Zhu Z, Cheng C, Chen L, Zhou L, Zhang J, Liu L, Han J, Zhao H. Far-infrared terahertz properties of L-cysteine and its hydrochloride monohydrate. Spectrochim Acta A Mol Biomol Spectrosc. 2020 Jan 15; 225:117476. PMID: 31470346.
      Citations:    Fields:    Translation:Cells
    50. Sun W, Chen D, Xue Y, Zhai L, Zhang D, Cao Z, Liu L, Cheng C, Zhang Y, Zhang Z. Genome-wide identification of AGO18b-bound miRNAs and phasiRNAs in maize by cRIP-seq. BMC Genomics. 2019 Aug 16; 20(1):656. PMID: 31419938.
      Citations: 2     Fields:    Translation:Animals
    51. Huang W, Cheng C, Shan WS, Ding ZF, Liu FE, Lu W, He W, Xu JG, Yin ZS. Knockdown of SGK1 alleviates the IL-1ß-induced chondrocyte anabolic and catabolic imbalance by activating FoxO1-mediated autophagy in human chondrocytes. FEBS J. 2020 01; 287(1):94-107. PMID: 31330080.
      Citations:    Fields:    Translation:HumansCells
    52. Zhao T, Chen H, Cheng C, Zhang J, Yan Z, Kuang J, Kong F, Li C, Lu Q. Liraglutide protects high-glucose-stimulated fibroblasts by activating the CD36-JNK-AP1 pathway to downregulate P4HA1. Biomed Pharmacother. 2019 Oct; 118:109224. PMID: 31349139.
      Citations:    Fields:    Translation:HumansCells
    53. Shan W, Cheng C, Huang W, Ding Z, Luo S, Cui G, Lu W, Liu F, Xu J, He W, Yin Z. Angiopoietin-like 2 upregulation promotes human chondrocyte injury via NF-?B and p38/MAPK signaling pathway. J Bone Miner Metab. 2019 Nov; 37(6):976-986. PMID: 31214838.
      Citations:    Fields:    Translation:HumansCells
    54. Li Y, Wu K, Quan W, Yu L, Chen S, Cheng C, Wu Q, Zhao S, Zhang Y, Zhou L. The dynamics of FTO binding and demethylation from the m6A motifs. RNA Biol. 2019 09; 16(9):1179-1189. PMID: 31149892.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    55. Zhao Y, Carter R, Natarajan S, Varn FS, Compton DA, Gawad C, Cheng C, Godek KM. Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells. BMC Med Genomics. 2019 05 31; 12(1):79. PMID: 31151460.
      Citations: 2     Fields:    Translation:HumansCells
    56. Almiron Bonnin DA, Havrda MC, Lee MC, Evans L, Ran C, Qian DC, Harrington LX, Valdes PA, Cheng C, Amos CI, Harris BT, Paulsen KD, Roberts DW, Israel MA. Characterizing the heterogeneity in 5-aminolevulinic acid-induced fluorescence in glioblastoma. J Neurosurg. 2019 May 24; 1-9. PMID: 31125970.
      Citations: 4     Fields:    
    57. Deng J, Li J, Sarde A, Lines JL, Lee YC, Qian DC, Pechenick DA, Manivanh R, Le Mercier I, Lowrey CH, Varn FS, Cheng C, Leib DA, Noelle RJ, Mabaera R. Hypoxia-Induced VISTA Promotes the Suppressive Function of Myeloid-Derived Suppressor Cells in the Tumor Microenvironment. Cancer Immunol Res. 2019 07; 7(7):1079-1090. PMID: 31088847.
      Citations: 17     Fields:    Translation:HumansAnimalsCells
    58. Zhao Y, Cheng C, Jiang T, Xu H, Chen Y, Ma Z, Qian G, Liu F. Control of Wheat Fusarium Head Blight by Heat-Stable Antifungal Factor (HSAF) from Lysobacter enzymogenes. Plant Dis. 2019 Jun; 103(6):1286-1292. PMID: 30995421.
      Citations: 1     Fields:    Translation:AnimalsCells
    59. Huang WY, Jiang C, Ye HB, Jiao JT, Cheng C, Huang J, Liu J, Zhang R, Shao JF. miR-124 upregulates astrocytic glutamate transporter-1 via the Akt and mTOR signaling pathway post ischemic stroke. Brain Res Bull. 2019 07; 149:231-239. PMID: 31004734.
      Citations: 1     Fields:    Translation:AnimalsCells
    60. Xu G, Zhou CS, Tang WZ, Xu J, Xu G, Li XL, Wei Q, Cheng C, Li W, Cai HD, Wang LD. [Neuroprotective effect of surround needling combined with acupoint injection on acute herpetic neuralgia]. Zhongguo Zhen Jiu. 2019 Apr 12; 39(4):371-6. PMID: 30957447.
      Citations:    Fields:    Translation:Humans
    61. Qi X, Jiao Y, Cheng C, Qian F, Chen Z, Wu Q. H22954, a novel long non-coding RNA down-regulated in AML, inhibits cancer growth in a BCL-2-dependent mechanism. Cancer Lett. 2019 07 10; 454:26-36. PMID: 30959078.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    62. Liang Z, Liu Z, Cheng C, Wang H, Deng X, Liu J, Liu C, Li Y, Fang W. VPS33B interacts with NESG1 to modulate EGFR/PI3K/AKT/c-Myc/P53/miR-133a-3p signaling and induce 5-fluorouracil sensitivity in nasopharyngeal carcinoma. Cell Death Dis. 2019 04 03; 10(4):305. PMID: 30944308.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    63. Sun Z, Xu L, Chen Z, Wang Y, Tusiime R, Cheng C, Zhou S, Liu Y, Yu M, Zhang H. Enhancing the Mechanical and Thermal Properties of Epoxy Resin via Blending with Thermoplastic Polysulfone. Polymers (Basel). 2019 Mar 11; 11(3). PMID: 30960445.
      Citations:    
    64. Xiang Y, Wu C, Wu J, Quan W, Cheng C, Zhou J, Chen L, Xiang L, Li F, Zhang K, Ran Q, Zhang Y, Li Z. In vitro expansion affects the response of human bone marrow stromal cells to irradiation. Stem Cell Res Ther. 2019 03 08; 10(1):82. PMID: 30850008.
      Citations:    Fields:    Translation:HumansCells
    65. Liu Y, Cheng C, Bai L, Yao F, Shi S, Zhang Y. Value of bile soluble B7H3 for the diagnosis of malignant biliary strictures: Results of a retrospective study. Surg Oncol. 2019 Mar; 28:195-200. PMID: 30851900.
      Citations:    Fields:    Translation:Humans
    66. Chen Y, Wang Y, Salas LA, Miller TW, Mark K, Marotti JD, Kettenbach AN, Cheng C, Christensen BC. Molecular and epigenetic profiles of BRCA1-like hormone-receptor-positive breast tumors identified with development and application of a copy-number-based classifier. Breast Cancer Res. 2019 01 25; 21(1):14. PMID: 30683142.
      Citations:    Fields:    Translation:HumansCells
    67. Peng F, He Q, Cheng C, Pan J. GCNT2 induces epithelial-mesenchymal transition and promotes migration and invasion in esophageal squamous cell carcinoma cells. Cell Biochem Funct. 2019 Jan; 37(1):42-51. PMID: 30575058.
      Citations:    Fields:    Translation:HumansCells
    68. Cheng C, Shan W, Huang W, Ding Z, Cui G, Liu F, Lu W, Xu J, He W, Yin Z. ACY-1215 exhibits anti-inflammatory and chondroprotective effects in human osteoarthritis chondrocytes via inhibition of STAT3 and NF-?B signaling pathways. Biomed Pharmacother. 2019 Jan; 109:2464-2471. PMID: 30551507.
      Citations: 4     Fields:    Translation:HumansCells
    69. Pan Y, Yuan C, Cheng C, Zhang Y, Ma Y, Zheng D, Zheng S, Li Y, Jin Y, Sun Y, Chen H. Frequency and clinical significance of NF1 mutation in lung adenocarcinomas from East Asian patients. Int J Cancer. 2019 01 15; 144(2):290-296. PMID: 30230541.
      Citations: 3     Fields:    Translation:Humans
    70. Ung MH, MacKenzie TA, Onega TL, Amos CI, Cheng C. Statins associate with improved mortality among patients with certain histological subtypes of lung cancer. Lung Cancer. 2018 12; 126:89-96. PMID: 30527197.
      Citations: 4     Fields:    Translation:Humans
    71. Kamal Y, Cheng C, Frost HR, Amos CI. Predictors of disease aggressiveness influence outcome from immunotherapy treatment in renal clear cell carcinoma. Oncoimmunology. 2019; 8(1):e1500106. PMID: 30546942.
      Citations:    
    72. Mortezaei Z, Cazier JB, Mehrabi AA, Cheng C, Masoudi-Nejad A. Novel putative drugs and key initiating genes for neurodegenerative disease determined using network-based genetic integrative analysis. J Cell Biochem. 2019 04; 120(4):5459-5471. PMID: 30302804.
      Citations:    Fields:    Translation:Humans
    73. Liu CM, Yang HX, Ma JQ, Yang W, Feng ZJ, Sun JM, Cheng C, Li J, Jiang H. Role of AMPK pathway in lead-induced endoplasmic reticulum stress in kidney and in paeonol-induced protection in mice. Food Chem Toxicol. 2018 Dec; 122:87-94. PMID: 30296514.
      Citations: 3     Fields:    Translation:AnimalsCells
    74. Gorlov I, Orlow I, Ringelberg C, Hernando E, Ernstoff MS, Cheng C, Her S, Parker JS, Thompson CL, Gerstenblith MR, Berwick M, Amos C. Identification of gene expression levels in primary melanoma associated with clinically meaningful characteristics. Melanoma Res. 2018 10; 28(5):380-389. PMID: 29975213.
      Citations: 5     Fields:    Translation:Humans
    75. Varn FS, Schaafsma E, Wang Y, Cheng C. Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs. Cancer Res. 2018 11 15; 78(22):6413-6423. PMID: 30254145.
      Citations: 12     Fields:    Translation:HumansCells
    76. Varn FS, Wang Y, Cheng C. A B cell-derived gene expression signature associates with an immunologically active tumor microenvironment and response to immune checkpoint blockade therapy. Oncoimmunology. 2019; 8(1):e1513440. PMID: 30546953.
      Citations:    
    77. Zhao Y, Schaafsma E, Gorlov IP, Hernando E, Thomas NE, Shen R, Turk MJ, Berwick M, Amos CI, Cheng C. A Leukocyte Infiltration Score Defined by a Gene Signature Predicts Melanoma Patient Prognosis. Mol Cancer Res. 2019 01; 17(1):109-119. PMID: 30171176.
      Citations: 6     Fields:    Translation:HumansCells
    78. Shee K, Jiang A, Varn FS, Liu S, Traphagen NA, Owens P, Ma CX, Hoog J, Cheng C, Golub TR, Straussman R, Miller TW. Cytokine sensitivity screening highlights BMP4 pathway signaling as a therapeutic opportunity in ER+ breast cancer. FASEB J. 2019 02; 33(2):1644-1657. PMID: 30161001.
      Citations: 3     Fields:    Translation:HumansCells
    79. Zhao Y, Schaafsma E, Cheng C. Applications of ENCODE data to Systematic Analyses via Data Integration. Curr Opin Syst Biol. 2018 Oct; 11:57-64. PMID: 31011690.
      Citations:    
    80. Du Z, Zhu Y, Zhu L, Zhang J, Li B, Wang J, Wang J, Zhang C, Cheng C. Effects of the herbicide mesotrione on soil enzyme activity and microbial communities. Ecotoxicol Environ Saf. 2018 Nov 30; 164:571-578. PMID: 30149356.
      Citations: 1     Fields:    Translation:PHPublic Health
    81. Wang Q, Li YM, Li Y, Hua FC, Wang QS, Zhang XL, Cheng C, Wu H, Yao ZM, Zhang WF, Hou QY, Miao WB, Wang XM. 18F-FDGPET/CT in fever of unknown origin and inflammation of unknown origin: a Chinese multi-center study. Eur J Nucl Med Mol Imaging. 2019 01; 46(1):159-165. PMID: 30099578.
      Citations: 5     Fields:    Translation:Humans
    82. Gao Y, Zheng J, Liang P, Tong M, Wang J, Wu C, He X, Liu C, Zhang S, Huang L, Jiang T, Cheng C, Meng F, Mu X, Lu Y, Li Y, Ai H, Qiao X, Xie XY, Wang W, Yin LP, Wu YY, Zheng R. Liver Fibrosis with Two-dimensional US Shear-Wave Elastography in Participants with Chronic Hepatitis B: A Prospective Multicenter Study. Radiology. 2018 11; 289(2):407-415. PMID: 30040048.
      Citations: 2     Fields:    Translation:Humans
    83. Liu CM, Yang W, Ma JQ, Yang HX, Feng ZJ, Sun JM, Cheng C, Jiang H. Dihydromyricetin Inhibits Lead-Induced Cognitive Impairments and Inflammation by the Adenosine 5'-Monophosphate-Activated Protein Kinase Pathway in Mice. J Agric Food Chem. 2018 Aug 01; 66(30):7975-7982. PMID: 29975840.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    84. Fang Q, Wang Q, Mao H, Xu J, Wang Y, Hu H, He S, Tu J, Cheng C, Tian G, Wang X, Liu X, Zhang C, Luo K. AtDIV2, an R-R-type MYB transcription factor of Arabidopsis, negatively regulates salt stress by modulating ABA signaling. . 2018 Nov; 37(11):1499-1511. PMID: 30014159.
      Citations:    
    85. Zhao Y, Zurawel AA, Jenkins NP, Duennwald ML, Cheng C, Kettenbach AN, Supattapone S. Comparative Analysis of Mutant Huntingtin Binding Partners in Yeast Species. Sci Rep. 2018 06 22; 8(1):9554. PMID: 29934597.
      Citations: 1     Fields:    Translation:Animals
    86. Zhang C, Zhu L, Wang J, Wang J, Du Z, Li B, Zhou T, Cheng C, Wang Z. Evaluating subchronic toxicity of fluoxastrobin using earthworms (Eisenia fetida). Sci Total Environ. 2018 Nov 15; 642:567-573. PMID: 29909323.
      Citations: 1     Fields:    Translation:Animals
    87. Kuang M, Shen X, Yuan C, Hu H, Zhang Y, Pan Y, Cheng C, Zheng D, Cheng L, Zhao Y, Tao X, Li Y, Chen H, Sun Y. Clinical Significance of Complex Glandular Patterns in Lung Adenocarcinoma: Clinicopathologic and Molecular Study in a Large Series of Cases. Am J Clin Pathol. 2018 May 31; 150(1):65-73. PMID: 29746612.
      Citations: 2     Fields:    Translation:Humans
    88. Kuklinski LF, Yan S, Li Z, Fisher JL, Cheng C, Noelle RJ, Angeles CV, Turk MJ, Ernstoff MS. VISTA expression on tumor-infiltrating inflammatory cells in primary cutaneous melanoma correlates with poor disease-specific survival. Cancer Immunol Immunother. 2018 Jul; 67(7):1113-1121. PMID: 29737375.
      Citations: 16     Fields:    Translation:HumansCells
    89. Cheng C, Guo S, Kollie DEGB, Zhang W, Xiao J, Liu J, Lu X, Xiao Y. Ex vivo resection and intestinal autotransplantation for a large mesenteric desmoid tumor secondary to familial adenomatous polyposis: A case report and literature review. Medicine (Baltimore). 2018 May; 97(20):e10762. PMID: 29768363.
      Citations:    Fields:    Translation:Humans
    90. Cheng C, Deng L, Li R. The Immunogenicity and Anti-Tumor Efficacy of a Rationally Designed EGFR Vaccine. Cell Physiol Biochem. 2018; 46(1):46-56. PMID: 29566364.
      Citations: 3     Fields:    Translation:AnimalsCells
    91. Varn FS, Tafe LJ, Amos CI, Cheng C. Computational immune profiling in lung adenocarcinoma reveals reproducible prognostic associations with implications for immunotherapy. Oncoimmunology. 2018; 7(6):e1431084. PMID: 29872556.
      Citations:    
    92. Rahme GJ, Luikart BW, Cheng C, Israel MA. A recombinant lentiviral PDGF-driven mouse model of proneural glioblastoma. Neuro Oncol. 2018 02 19; 20(3):332-342. PMID: 29016807.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    93. Shee K, Yang W, Hinds JW, Hampsch RA, Varn FS, Traphagen NA, Patel K, Cheng C, Jenkins NP, Kettenbach AN, Demidenko E, Owens P, Faber AC, Golub TR, Straussman R, Miller TW. Therapeutically targeting tumor microenvironment-mediated drug resistance in estrogen receptor-positive breast cancer. J Exp Med. 2018 03 05; 215(3):895-910. PMID: 29436393.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    94. Deng X, Liu Z, Liu X, Fu Q, Deng T, Lu J, Liu Y, Liang Z, Jiang Q, Cheng C, Fang W. miR-296-3p Negatively Regulated by Nicotine Stimulates Cytoplasmic Translocation of c-Myc via MK2 to Suppress Chemotherapy Resistance. Mol Ther. 2018 04 04; 26(4):1066-1081. PMID: 29525743.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    95. Liu Z, Luo C, Yang W, Wang K, Hu C, Zou J, Zhu H, Fu L, Nie J, Cheng C. Increased Numb protein expression predicts poor clinical outcomes in esophageal squamous cell carcinoma patients. . 2018 01 02; 19(1):34-41. PMID: 28095111.
      Citations:    
    96. Lin A, Yin J, Cheng C, Yang Z, Yang H. Decreased expression of FOXA2 promotes eutopic endometrial cell proliferation and migration in patients with endometriosis. Reprod Biomed Online. 2018 Feb; 36(2):181-187. PMID: 29233503.
      Citations: 2     Fields:    Translation:Humans
    97. Almiron Bonnin DA, Havrda MC, Lee MC, Liu H, Zhang Z, Nguyen LN, Harrington LX, Hassanpour S, Cheng C, Israel MA. Secretion-mediated STAT3 activation promotes self-renewal of glioma stem-like cells during hypoxia. Oncogene. 2018 02 22; 37(8):1107-1118. PMID: 29155422.
      Citations: 12     Fields:    Translation:AnimalsCells
    98. Wang Y, Ung MH, Cantor S, Cheng C. Computational Investigation of Homologous Recombination DNA Repair Deficiency in Sporadic Breast Cancer. Sci Rep. 2017 Nov 16; 7(1):15742. PMID: 29146938.
      Citations: 2     Fields:    Translation:HumansCells
    99. Zhao Y, Varn FS, Cai G, Xiao F, Amos CI, Cheng C. A P53-Deficiency Gene Signature Predicts Recurrence Risk of Patients with Early-Stage Lung Adenocarcinoma. Cancer Epidemiol Biomarkers Prev. 2018 01; 27(1):86-95. PMID: 29141854.
      Citations: 10     Fields:    Translation:Humans
    100. Liu CM, Ma JQ, Sun JM, Feng ZJ, Cheng C, Yang W, Jiang H. Association of changes in ER stress-mediated signaling pathway with lead-induced insulin resistance and apoptosis in rats and their prevention by A-type dimeric epigallocatechin-3-gallate. Food Chem Toxicol. 2017 Dec; 110:325-332. PMID: 29107025.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    101. He T, Huang Y, Zhang C, Liu D, Cheng C, Xu W, Zhang X. Interleukin-17A-promoted MSC2 polarization related with new bone formation of ankylosing spondylitis. Oncotarget. 2017 Nov 14; 8(57):96993-97008. PMID: 29228588.
      Citations: 1     Fields:    
    102. Cao Q, Anyansi C, Hu X, Xu L, Xiong L, Tang W, Mok MTS, Cheng C, Fan X, Gerstein M, Cheng ASL, Yip KY. Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nat Genet. 2017 Oct; 49(10):1428-1436. PMID: 28869592.
      Citations: 42     Fields:    Translation:HumansCells
    103. Han P, Yao R, Zhai D, Cheng C, Yang F, Sun S, Zhang D, Yu C. A case report of lung adenocarcinoma with polyserous effusions as the onset symptom. Medicine (Baltimore). 2017 Sep; 96(36):e7867. PMID: 28885340.
      Citations:    Fields:    Translation:Humans
    104. Liu C, Ma J, Sun J, Cheng C, Feng Z, Jiang H, Yang W. Flavonoid-Rich Extract of Paulownia fortunei Flowers Attenuates Diet-Induced Hyperlipidemia, Hepatic Steatosis and Insulin Resistance in Obesity Mice by AMPK Pathway. Nutrients. 2017 Aug 30; 9(9). PMID: 28867797.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    105. Wang Y, Ung MH, Xia T, Cheng W, Cheng C. Cancer cell line specific co-factors modulate the FOXM1 cistrome. Oncotarget. 2017 Sep 29; 8(44):76498-76515. PMID: 29100329.
      Citations: 5     Fields:    
    106. Yang Y, Liu Y, Cheng C, Shi H, Yang H, Yuan H, Ni C. Rational Design of GO-Modified Fe3O4/SiO2 Nanoparticles with Combined Rhenium-188 and Gambogic Acid for Magnetic Target Therapy. ACS Appl Mater Interfaces. 2017 Aug 30; 9(34):28195-28208. PMID: 28793762.
      Citations: 2     Fields:    
    107. Tian A, Benchabane H, Wang Z, Zimmerman C, Xin N, Perochon J, Kalna G, Sansom OJ, Cheng C, Cordero JB, Ahmed Y. Intestinal stem cell overproliferation resulting from inactivation of the APC tumor suppressor requires the transcription cofactors Earthbound and Erect wing. PLoS Genet. 2017 Jul; 13(7):e1006870. PMID: 28708826.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    108. Liu S, Wang Z, Chen D, Zhang B, Tian RR, Wu J, Zhang Y, Xu K, Yang LM, Cheng C, Ma J, Lv L, Zheng YT, Hu X, Zhang Y, Wang X, Li J. Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain. Genome Res. 2017 09; 27(9):1608-1620. PMID: 28687705.
      Citations: 14     Fields:    Translation:HumansAnimals
    109. Zhao W, Qu W, Fu C, Jiang H, Liu S, Cheng C. Antero-lateral minimally invasive plate osteosynthesis (MIPO) with the radial nerve exploration for extra-articular distal-third diaphyseal fractures of the humerus. Int Orthop. 2017 09; 41(9):1757-1762. PMID: 28577034.
      Citations: 2     Fields:    Translation:Humans
    110. Zhang B, Wang X, Cheng C, Sun D, Li C. Total Synthesis of (±)-Corymine. Angew Chem Int Ed Engl. 2017 06 19; 56(26):7484-7487. PMID: 28466505.
      Citations: 3     Fields:    Translation:Cells
    111. Zhang M, Gu L, Cheng C, Zhu J, Wu H, Ma J, Dong W, Kong X, Jiang M, Ouyang P. High-yield production of mannitol by Leuconostoc pseudomesenteroides CTCC G123 from chicory-derived inulin hydrolysate. J Ind Microbiol Biotechnol. 2017 08; 44(8):1237-1244. PMID: 28509952.
      Citations: 1     Fields:    Translation:AnimalsCells
    112. Mark KMK, Varn FS, Ung MH, Qian F, Cheng C. The E2F4 prognostic signature predicts pathological response to neoadjuvant chemotherapy in breast cancer patients. BMC Cancer. 2017 05 02; 17(1):306. PMID: 28464832.
      Citations:    Fields:    Translation:Humans
    113. Cai G, Xiao F, Cheng C, Li Y, Amos CI, Whitfield ML. Population effect model identifies gene expression predictors of survival outcomes in lung adenocarcinoma for both Caucasian and Asian patients. PLoS One. 2017; 12(4):e0175850. PMID: 28426704.
      Citations: 2     Fields:    Translation:Humans
    114. Beattie SR, Mark KMK, Thammahong A, Ries LNA, Dhingra S, Caffrey-Carr AK, Cheng C, Black CC, Bowyer P, Bromley MJ, Obar JJ, Goldman GH, Cramer RA. Filamentous fungal carbon catabolite repression supports metabolic plasticity and stress responses essential for disease progression. PLoS Pathog. 2017 Apr; 13(4):e1006340. PMID: 28423062.
      Citations: 20     Fields:    Translation:Animals
    115. Nowak EC, Lines JL, Varn FS, Deng J, Sarde A, Mabaera R, Kuta A, Le Mercier I, Cheng C, Noelle RJ. Immunoregulatory functions of VISTA. Immunol Rev. 2017 03; 276(1):66-79. PMID: 28258694.
      Citations: 38     Fields:    Translation:HumansAnimals
    116. Jin L, Li G, Yu D, Huang W, Cheng C, Liao S, Wu Q, Zhang Y. Transcriptome analysis reveals the complexity of alternative splicing regulation in the fungus Verticillium dahliae. BMC Genomics. 2017 02 06; 18(1):130. PMID: 28166730.
      Citations: 9     Fields:    Translation:AnimalsCells
    117. Almiron Bonnin DA, Ran C, Havrda MC, Liu H, Hitoshi Y, Zhang Z, Cheng C, Ung M, Israel MA. Insulin-Mediated Signaling Facilitates Resistance to PDGFR Inhibition in Proneural hPDGFB-Driven Gliomas. . 2017 04; 16(4):705-716. PMID: 28138037.
      Citations:    
    118. Varn FS, Wang Y, Mullins DW, Fiering S, Cheng C. Systematic Pan-Cancer Analysis Reveals Immune Cell Interactions in the Tumor Microenvironment. Cancer Res. 2017 03 15; 77(6):1271-1282. PMID: 28126714.
      Citations: 32     Fields:    Translation:HumansCells
    119. Andrews E, Wang Y, Xia T, Cheng W, Cheng C. Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PLoS Comput Biol. 2017 01; 13(1):e1005340. PMID: 28103241.
      Citations: 3     Fields:    Translation:Humans
    120. Yang CC, Chen MH, Lin SY, Andrews EH, Cheng C, Liu CC, Chen JJ. Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data. BMC Genomics. 2017 01 10; 18(1):61. PMID: 28068916.
      Citations:    Fields:    Translation:HumansCells
    121. Ung MH, Wang GL, Varn FS, Cheng C. Application of pharmacologically induced transcriptomic profiles to interrogate PI3K-Akt-mTOR pathway activity associated with cancer patient prognosis. Oncotarget. 2016 Dec 20; 7(51):84142-84154. PMID: 27589846.
      Citations: 3     Fields:    Translation:HumansCells
    122. Posternak V, Ung MH, Cheng C, Cole MD. MYC Mediates mRNA Cap Methylation of Canonical Wnt/ß-Catenin Signaling Transcripts By Recruiting CDK7 and RNA Methyltransferase. Mol Cancer Res. 2017 02; 15(2):213-224. PMID: 27899423.
      Citations: 5     Fields:    Translation:HumansCells
    123. Liu Z, Yao S, Zhou Q, Deng Z, Zou J, Feng H, Zhu H, Cheng C. Predictors of extubation outcomes following myasthenic crisis. J Int Med Res. 2016 Dec; 44(6):1524-1533. PMID: 27856933.
      Citations: 3     Fields:    Translation:Humans
    124. Liu Z, Lai Y, Yao S, Feng H, Zou J, Liu W, Lei Y, Zhu H, Cheng C. Clinical Outcomes of Thymectomy in Myasthenia Gravis Patients with a History of Crisis. World J Surg. 2016 Nov; 40(11):2681-2687. PMID: 27312319.
      Citations: 1     Fields:    Translation:Humans
    125. Cheng C, Chen WW, Xu B, Xu MH. Access to Indole-Fused Polyheterocycles via Pd-Catalyzed Base-Free Intramolecular Cross Dehydrogenative Coupling. J Org Chem. 2016 11 18; 81(22):11501-11507. PMID: 27766860.
      Citations: 1     Fields:    
    126. Wang Y, Mark KM, Ung MH, Kettenbach A, Miller T, Xu W, Cheng W, Xia T, Cheng C. Application of RNAi-induced gene expression profiles for prognostic prediction in breast cancer. Genome Med. 2016 10 27; 8(1):114. PMID: 27788678.
      Citations: 2     Fields:    Translation:HumansCells
    127. Chesmore KN, Bartlett J, Cheng C, Williams SM. Complex Patterns of Association between Pleiotropy and Transcription Factor Evolution. Genome Biol Evol. 2016 10 23; 8(10):3159-3170. PMID: 27635052.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    128. Ung MH, Varn FS, Cheng C. In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics. Expert Opin Drug Discov. 2016 Dec; 11(12):1213-1222. PMID: 27689915.
      Citations: 1     Fields:    Translation:HumansAnimals
    129. Jiang Q, Zhou Y, Yang H, Li L, Deng X, Cheng C, Xie Y, Luo X, Fang W, Liu Z. A directly negative interaction of miR-203 and ZEB2 modulates tumor stemness and chemotherapy resistance in nasopharyngeal carcinoma. Oncotarget. 2016 Oct 11; 7(41):67288-67301. PMID: 27589832.
      Citations: 12     Fields:    Translation:HumansAnimalsCells
    130. Varn FS, Mullins DW, Arias-Pulido H, Fiering S, Cheng C. Adaptive immunity programmes in breast cancer. Immunology. 2017 Jan; 150(1):25-34. PMID: 27564847.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    131. Liu X, Yu P, Cheng C, Potash JB, Han S. GLITTER: a web-based application for gene link inspection through tissue-specific coexpression. Sci Rep. 2016 09 14; 6:33460. PMID: 27623690.
      Citations: 1     Fields:    Translation:Humans
    132. Kato M, Kashem MA, Cheng C. An intestinal microRNA modulates the homeostatic adaptation to chronic oxidative stress in C. elegans. Aging (Albany NY). 2016 09 12; 8(9):1979-2005. PMID: 27623524.
      Citations: 6     Fields:    Translation:AnimalsCells
    133. Yang CC, Andrews EH, Chen MH, Wang WY, Chen JJ, Gerstein M, Liu CC, Cheng C. iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data. BMC Genomics. 2016 08 12; 17(1):632. PMID: 27519564.
      Citations: 1     Fields:    Translation:HumansCells
    134. Ung MH, Liu CC, Cheng C. Integrative analysis of cancer genes in a functional interactome. Sci Rep. 2016 06 30; 6:29228. PMID: 27356765.
      Citations: 2     Fields:    Translation:Humans
    135. Zhang C, Bu W, Ni D, Zuo C, Cheng C, Li Q, Zhang L, Wang Z, Shi J. A Polyoxometalate Cluster Paradigm with Self-Adaptive Electronic Structure for Acidity/Reducibility-Specific Photothermal Conversion. J Am Chem Soc. 2016 07 06; 138(26):8156-64. PMID: 27264421.
      Citations: 13     Fields:    
    136. Canfield K, Wells W, Geradts J, Kinlaw WB, Cheng C, Kurokawa M. Inverse association between MDM2 and HUWE1 protein expression levels in human breast cancer and liposarcoma. Int J Clin Exp Pathol. 2016; 9(6):6342-6349. PMID: 29375730.
      Citations: 1     Fields:    
    137. Huang Y, Wang R, Pan Y, Zhang Y, Li H, Cheng C, Zheng D, Zheng S, Li Y, Shen X, Hu H, Cai D, Wang S, Zhang Y, Xiang J, Sun Y, Zhang J, Chen H. Clinical and genetic features of lung squamous cell cancer in never-smokers. Oncotarget. 2016 Jun 14; 7(24):35979-35988. PMID: 27092882.
      Citations: 5     Fields:    Translation:Humans
    138. Zheng S, Wang R, Zhang Y, Pan Y, Cheng C, Zheng D, Sun Y, Chen H. Former smokers with non-small-cell lung cancers: a comprehensive investigation of clinicopathologic characteristics, oncogenic drivers, and prognosis. Cancer Med. 2016 08; 5(8):2117-25. PMID: 27227356.
      Citations: 2     Fields:    Translation:Humans
    139. Petrone A, Adamo ME, Cheng C, Kettenbach AN. Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics. Mol Cell Proteomics. 2016 07; 15(7):2448-61. PMID: 27134283.
      Citations: 23     Fields:    Translation:HumansCells
    140. Zhao M, Luo R, Liu Y, Gao L, Fu Z, Fu Q, Luo X, Chen Y, Deng X, Liang Z, Li X, Cheng C, Liu Z, Fang W. miR-3188 regulates nasopharyngeal carcinoma proliferation and chemosensitivity through a FOXO1-modulated positive feedback loop with mTOR-p-PI3K/AKT-c-JUN. Nat Commun. 2016 Apr 20; 7:11309. PMID: 27095304.
      Citations: 45     Fields:    Translation:HumansAnimalsCells
    141. Bai M, Zheng Q, Tian Y, Zhang Z, Chen C, Cheng C, Meng X. Inactivation of invasive marine species in the process of conveying ballast water using OH based on a strong ionization discharge. Water Res. 2016 06 01; 96:217-24. PMID: 27058879.
      Citations:    Fields:    Translation:AnimalsPHPublic Health
    142. Yan KK, Wang D, Sethi A, Muir P, Kitchen R, Cheng C, Gerstein M. Cross-Disciplinary Network Comparison: Matchmaking Between Hairballs. Cell Syst. 2016 Mar 23; 2(3):147-157. PMID: 27047991.
      Citations: 2     Fields:    
    143. Cheng C, Jiao JT, Qian Y, Guo XY, Huang J, Dai MC, Zhang L, Ding XP, Zong D, Shao JF. Curcumin induces G2/M arrest and triggers apoptosis via FoxO1 signaling in U87 human glioma cells. Mol Med Rep. 2016 May; 13(5):3763-70. PMID: 27035875.
      Citations: 11     Fields:    Translation:HumansCells
    144. Liu Z, Cheng C, Luo X, Xia Q, Zhang Y, Long X, Jiang Q, Fang W. CDK4 and miR-15a comprise an abnormal automodulatory feedback loop stimulating the pathogenesis and inducing chemotherapy resistance in nasopharyngeal carcinoma. BMC Cancer. 2016 Mar 18; 16:238. PMID: 26993269.
      Citations: 3     Fields:    Translation:HumansCells
    145. Ung MH, Sun CH, Weng CW, Huang CC, Lin CC, Liu CC, Cheng C. Integrated Drug Expression Analysis for leukemia: an integrated in silico and in vivo approach to drug discovery. Pharmacogenomics J. 2017 07; 17(4):351-359. PMID: 26975228.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    146. Rahme GJ, Zhang Z, Young AL, Cheng C, Bivona EJ, Fiering SN, Hitoshi Y, Israel MA. PDGF Engages an E2F-USP1 Signaling Pathway to Support ID2-Mediated Survival of Proneural Glioma Cells. Cancer Res. 2016 05 15; 76(10):2964-76. PMID: 26951930.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    147. Zheng D, Wang R, Zhang Y, Pan Y, Cheng X, Cheng C, Zheng S, Li H, Gong R, Li Y, Shen X, Sun Y, Chen H. The prevalence and prognostic significance of KRAS mutation subtypes in lung adenocarcinomas from Chinese populations. Onco Targets Ther. 2016; 9:833-43. PMID: 26955281.
      Citations:    
    148. Yang H, Yin J, Ficarrotta K, Hsu SH, Zhang W, Cheng C. Aberrant expression and hormonal regulation of Galectin-3 in endometriosis women with infertility. J Endocrinol Invest. 2016 Jul; 39(7):785-91. PMID: 26886939.
      Citations: 1     Fields:    Translation:HumansCells
    149. Cheng C, Lou S, Andrews EH, Ung MH, Varn FS. Integrative Genomic Analyses Yield Cell-Cycle Regulatory Programs with Prognostic Value. Mol Cancer Res. 2016 Apr; 14(4):332-43. PMID: 26856934.
      Citations: 1     Fields:    Translation:HumansCells
    150. Zhao Y, Wang R, Shen X, Pan Y, Cheng C, Li Y, Shen L, Zhang Y, Li H, Zheng D, Ye T, Zheng S, Sun Y, Chen H. Minor Components of Micropapillary and Solid Subtypes in Lung Adenocarcinoma are Predictors of Lymph Node Metastasis and Poor Prognosis. Ann Surg Oncol. 2016 06; 23(6):2099-105. PMID: 26842488.
      Citations: 16     Fields:    Translation:Humans
    151. Varn FS, Andrews EH, Mullins DW, Cheng C. Integrative analysis of breast cancer reveals prognostic haematopoietic activity and patient-specific immune response profiles. Nat Commun. 2016 Jan 04; 7:10248. PMID: 26725977.
      Citations: 12     Fields:    Translation:HumansAnimals
    152. Zheng D, Wang R, Zhang Y, Pan Y, Cheng X, Cheng C, Zheng S, Li H, Gong R, Li Y, Shen X, Sun Y, Chen H. Prevalence and clinicopathological characteristics of ALK fusion subtypes in lung adenocarcinomas from Chinese populations. J Cancer Res Clin Oncol. 2016 Apr; 142(4):833-43. PMID: 26646246.
      Citations: 3     Fields:    Translation:Humans
    153. Xu G, Xu S, Tang WZ, Xú G, Cheng C, Xu J. Local Injection of Methylcobalamin Combined with Lidocaine for Acute Herpetic Neuralgia. Pain Med. 2016 03; 17(3):572-581. PMID: 26814241.
      Citations: 3     Fields:    Translation:Humans
    154. Varn FS, Andrews EH, Cheng C. Systematic analysis of hematopoietic gene expression profiles for prognostic prediction in acute myeloid leukemia. Sci Rep. 2015 Nov 24; 5:16987. PMID: 26598031.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    155. Liu S, Wang R, Zhang Y, Li Y, Cheng C, Pan Y, Xiang J, Zhang Y, Chen H, Sun Y. Precise Diagnosis of Intraoperative Frozen Section Is an Effective Method to Guide Resection Strategy for Peripheral Small-Sized Lung Adenocarcinoma. J Clin Oncol. 2016 Feb 01; 34(4):307-13. PMID: 26598742.
      Citations: 39     Fields:    Translation:Humans
    156. Zheng S, Pan Y, Wang R, Li Y, Cheng C, Shen X, Li B, Zheng D, Sun Y, Chen H. SOX2 expression is associated with FGFR fusion genes and predicts favorable outcome in lung squamous cell carcinomas. Onco Targets Ther. 2015; 8:3009-16. PMID: 26527886.
      Citations:    
    157. Zhang S, Zhou J, Hu H, Gong H, Chen L, Cheng C, Zeng J. A deep learning framework for modeling structural features of RNA-binding protein targets. Nucleic Acids Res. 2016 Feb 29; 44(4):e32. PMID: 26467480.
      Citations: 32     Fields:    Translation:Cells
    158. Liu YC, Li JR, Sun CH, Andrews E, Chao RF, Lin FM, Weng SL, Hsu SD, Huang CC, Cheng C, Liu CC, Huang HD. CircNet: a database of circular RNAs derived from transcriptome sequencing data. Nucleic Acids Res. 2016 Jan 04; 44(D1):D209-15. PMID: 26450965.
      Citations: 95     Fields:    Translation:Humans
    159. Cheng C, Wang R, Li Y, Pan Y, Zhang Y, Li H, Zheng D, Zheng S, Shen X, Sun Y, Chen H. EGFR Exon 18 Mutations in East Asian Patients with Lung Adenocarcinomas: A Comprehensive Investigation of Prevalence, Clinicopathologic Characteristics and Prognosis. Sci Rep. 2015 Sep 10; 5:13959. PMID: 26354324.
      Citations: 7     Fields:    Translation:Humans
    160. Liu Q, Pan D, Cheng C, Zhang A, Ma C, Wang L, Zhang D, Liu H, Jiang H, Wang T, Xu Y, Yang R, Chen F, Yang M, Zuo C. Targeting of MMP2 activity in malignant tumors with a 68Ga-labeled gelatinase inhibitor cyclic peptide. Nucl Med Biol. 2015 Dec; 42(12):939-44. PMID: 26344861.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    161. Zheng D, Wang R, Pan Y, Zheng S, Zhang Y, Li H, Cheng C, Gong R, Li Y, Shen X, Hu H, Cai D, Cheng X, Sun Y, Chen H. Prevalence and Clinicopathological Characteristics of BRAF Mutations in Chinese Patients with Lung Adenocarcinoma. Ann Surg Oncol. 2015 Dec; 22 Suppl 3:S1284-91. PMID: 26202550.
      Citations: 3     Fields:    Translation:Humans
    162. X G, Xu S, Cheng C, Xú G, Tang WZ, Xu J. Local Administration of Methylcobalamin and Lidocaine for Acute Ophthalmic Herpetic Neuralgia: A Single-Center Randomized Controlled Trial. Pain Pract. 2016 09; 16(7):869-81. PMID: 26200815.
      Citations: 1     Fields:    Translation:Humans
    163. Yang H, Kang K, Cheng C, Mamillapalli R, Taylor HS. Integrative Analysis Reveals Regulatory Programs in Endometriosis. Reprod Sci. 2015 Sep; 22(9):1060-72. PMID: 26134036.
      Citations: 7     Fields:    Translation:HumansCells
    164. Ung MH, Varn FS, Cheng C. IDEA: Integrated Drug Expression Analysis-Integration of Gene Expression and Clinical Data for the Identification of Therapeutic Candidates. CPT Pharmacometrics Syst Pharmacol. 2015 Jul; 4(7):415-25. PMID: 26312165.
      Citations: 3     Fields:    
    165. Cheng C, Varn FS, Marsit CJ. E2F4 Program Is Predictive of Progression and Intravesical Immunotherapy Efficacy in Bladder Cancer. Mol Cancer Res. 2015 Sep; 13(9):1316-24. PMID: 26032289.
      Citations: 3     Fields:    Translation:HumansCells
    166. Liu Y, Liu Y, Bu W, Cheng C, Zuo C, Xiao Q, Sun Y, Ni D, Zhang C, Liu J, Shi J. Hypoxia Induced by Upconversion-Based Photodynamic Therapy: Towards Highly Effective Synergistic Bioreductive Therapy in Tumors. Angew Chem Int Ed Engl. 2015 Jul 06; 54(28):8105-9. PMID: 26012928.
      Citations: 31     Fields:    Translation:HumansAnimals
    167. Ung MH, Varn FS, Lou S, Cheng C. Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer. PLoS Comput Biol. 2015 May; 11(5):e1004269. PMID: 25996148.
      Citations: 3     Fields:    Translation:HumansCells
    168. Wang D, Yan KK, Sisu C, Cheng C, Rozowsky J, Meyerson W, Gerstein MB. Loregic: a method to characterize the cooperative logic of regulatory factors. PLoS Comput Biol. 2015 Apr; 11(4):e1004132. PMID: 25884877.
      Citations: 7     Fields:    Translation:HumansAnimals
    169. Cheng C, Andrews E, Yan KK, Ung M, Wang D, Gerstein M. An approach for determining and measuring network hierarchy applied to comparing the phosphorylome and the regulome. Genome Biol. 2015 Mar 31; 16:63. PMID: 25880651.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    170. Huang J, Dai M, Cheng C, Wu D, Jiang C, Zhou Z, Shao J. Far-lateral approach assisted by multimodal neuronavigation and electrophysiological monitoring technique for complex clival tumor. Br J Neurosurg. 2015; 29(4):597-9. PMID: 25816926.
      Citations:    Fields:    Translation:Humans
    171. Hu S, Zhang J, Zuo C, Cheng C, Liu Q, Sun G. (18)F-FDG-PET/CT findings in pancreatic metastasis. Radiol Med. 2015 Oct; 120(10):887-98. PMID: 25795439.
      Citations: 2     Fields:    Translation:HumansCTClinical Trials
    172. Varn FS, Ung MH, Lou SK, Cheng C. Integrative analysis of survival-associated gene sets in breast cancer. BMC Med Genomics. 2015 Mar 12; 8:11. PMID: 25881247.
      Citations: 9     Fields:    Translation:Humans
    173. Wan F, Cheng C, Wang Z, Xiao X, Zeng H, Xing S, Chen X, Wang J, Li S, Zhang Y, Xiang W, Zhu Z, Johnson C, Zhu Z. SATB1 overexpression regulates the development and progression in bladder cancer through EMT. PLoS One. 2015; 10(2):e0117518. PMID: 25706386.
      Citations: 11     Fields:    Translation:HumansCells
    174. Balboni AL, Cherukuri P, Ung M, DeCastro AJ, Cheng C, DiRenzo J. p53 and ?Np63a Coregulate the Transcriptional and Cellular Response to TGFß and BMP Signals. Mol Cancer Res. 2015 Apr; 13(4):732-42. PMID: 25700283.
      Citations: 7     Fields:    Translation:HumansCells
    175. Huan W, Ji G, Cheng C, An J, Yang Y, Liu X. Preparation, Characterization of High-Luminescent and Magnetic Eu3+, Dy3+ Doped Superparamagnetic Nano-Fe3O4. J Nanosci Nanotechnol. 2015 Feb; 15(2):1780-8. PMID: 26353732.
      Citations: 2     Fields:    
    176. Fan Y, Wu J, Ung MH, De Lay N, Cheng C, Ling J. Protein mistranslation protects bacteria against oxidative stress. Nucleic Acids Res. 2015 Feb 18; 43(3):1740-8. PMID: 25578967.
      Citations: 26     Fields:    Translation:Cells
    177. Tan J, Ung M, Cheng C, Greene CS. Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders. Pac Symp Biocomput. 2015; 132-43. PMID: 25592575.
      Citations: 33     Fields:    Translation:HumansCells
    178. Khaleel SS, Andrews EH, Ung M, DiRenzo J, Cheng C. E2F4 regulatory program predicts patient survival prognosis in breast cancer. Breast Cancer Res. 2014 Dec 02; 16(6):486. PMID: 25440089.
      Citations: 20     Fields:    Translation:HumansCells
    179. Liu Z, Ye P, Wang S, Wu J, Sun Y, Zhang A, Ren L, Cheng C, Huang X, Wang K, Deng P, Wu C, Yue Z, Xia J. MicroRNA-150 protects the heart from injury by inhibiting monocyte accumulation in a mouse model of acute myocardial infarction. Circ Cardiovasc Genet. 2015 Feb; 8(1):11-20. PMID: 25466411.
      Citations: 24     Fields:    Translation:HumansAnimalsCells
    180. Cheng C, Wang S, Ye P, Huang X, Liu Z, Wu J, Sun Y, Xie A, Wang G, Xia J. 'Default' generated neonatal regulatory T cells are hypomethylated at conserved non-coding sequence 2 and promote long-term cardiac allograft survival. Immunology. 2014 Dec; 143(4):618-30. PMID: 24944101.
      Citations: 2     Fields:    Translation:AnimalsCells
    181. Hu S, Zhang J, Cheng C, Liu Q, Sun G, Zuo C. The role of 18F-FDG PET/CT in differentiating malignant from benign portal vein thrombosis. Abdom Imaging. 2014 Dec; 39(6):1221-7. PMID: 24913670.
      Citations: 11     Fields:    Translation:Humans
    182. Greene CS, Tan J, Ung M, Moore JH, Cheng C. Big data bioinformatics. J Cell Physiol. 2014 Dec; 229(12):1896-900. PMID: 24799088.
      Citations: 22     Fields:    Translation:Humans
    183. Huang X, Ren L, Ye P, Cheng C, Wu J, Wang S, Sun Y, Liu Z, Xie A, Xia J. Peroxisome proliferator-activated receptor ? deficiency in T cells accelerates chronic rejection by influencing the differentiation of CD4+ T cells and alternatively activated macrophages. PLoS One. 2014; 9(11):e112953. PMID: 25383620.
      Citations: 2     Fields:    Translation:AnimalsCells
    184. Chung D, Barker BM, Carey CC, Merriman B, Werner ER, Lechner BE, Dhingra S, Cheng C, Xu W, Blosser SJ, Morohashi K, Mazurie A, Mitchell TK, Haas H, Mitchell AP, Cramer RA. ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence. PLoS Pathog. 2014 Nov; 10(11):e1004487. PMID: 25375670.
      Citations: 55     Fields:    Translation:AnimalsCells
    185. Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, Cheng C, Loros JJ, Dunlap JC. Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proc Natl Acad Sci U S A. 2014 Dec 02; 111(48):16995-7002. PMID: 25362047.
      Citations: 41     Fields:    Translation:AnimalsCells
    186. Niu Y, Wang L, Cheng C, Du C, Lu X, Wang G, Liu J. Increased expressions of SATB1 and S100A4 are associated with poor prognosis in human colorectal carcinoma. APMIS. 2015 Feb; 123(2):93-101. PMID: 25257341.
      Citations: 13     Fields:    Translation:Humans
    187. Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R. Comparative analysis of the transcriptome across distant species. Nature. 2014 Aug 28; 512(7515):445-8. PMID: 25164755.
      Citations: 95     Fields:    Translation:HumansAnimalsCells
    188. Yan KK, Wang D, Rozowsky J, Zheng H, Cheng C, Gerstein M. OrthoClust: an orthology-based network framework for clustering data across multiple species. Genome Biol. 2014 Aug 28; 15(8):R100. PMID: 25249401.
      Citations: 10     Fields:    Translation:AnimalsCells
    189. Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, Ma L, Niu W, Rehm EJ, Rozowsky J, Slattery M, Spokony R, Terrell R, Vafeados D, Wang D, Weisdepp P, Wu YC, Xie D, Yan KK, Feingold EA, Good PJ, Pazin MJ, Huang H, Bickel PJ, Brenner SE, Reinke V, Waterston RH, Gerstein M, White KP, Kellis M, Snyder M. Comparative analysis of regulatory information and circuits across distant species. Nature. 2014 Aug 28; 512(7515):453-6. PMID: 25164757.
      Citations: 69     Fields:    Translation:HumansAnimalsCells
    190. Yang H, Li D, Cheng C. Relating gene expression evolution with CpG content changes. BMC Genomics. 2014 Aug 20; 15:693. PMID: 25142157.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    191. Hong J, Liu Z, Zhu H, Zhang X, Liang Y, Yao S, Wang F, Xie X, Zhang B, Tan T, Fu L, Nie J, Cheng C. The tumor suppressive role of NUMB isoform 1 in esophageal squamous cell carcinoma. Oncotarget. 2014 Jul 30; 5(14):5602-14. PMID: 24980814.
      Citations: 13     Fields:    Translation:HumansCells
    192. Zhu SK, Zhou Y, Cheng C, Zhong S, Wu HQ, Wang B, Fan P, Xiong JX, Yang HJ, Wu HS. Overexpression of membrane-type 2 matrix metalloproteinase induced by hypoxia-inducible factor-1a in pancreatic cancer: Implications for tumor progression and prognosis. Mol Clin Oncol. 2014 Nov; 2(6):973-981. PMID: 25279184.
      Citations:    
    193. Cheng C, Wan F, Liu L, Zeng F, Xing S, Wu X, Chen X, Zhu Z. Overexpression of SATB1 is associated with biologic behavior in human renal cell carcinoma. PLoS One. 2014; 9(5):e97406. PMID: 24835085.
      Citations: 11     Fields:    Translation:Humans
    194. Mishra BP, Zaffuto KM, Artinger EL, Org T, Mikkola HK, Cheng C, Djabali M, Ernst P. The histone methyltransferase activity of MLL1 is dispensable for hematopoiesis and leukemogenesis. Cell Rep. 2014 May 22; 7(4):1239-47. PMID: 24813891.
      Citations: 51     Fields:    Translation:AnimalsCells
    195. Ming Q, Wang A, Cheng C. Molecular identification of Tribolium castaneum and T. confusum (Coleoptera: Tenebrionidae) using PCR-RFLP analysis. J Genet. 2014 Apr 22; 93(1):e17-21. PMID: 24823304.
      Citations: 1     Fields:    Translation:AnimalsCells
    196. Sun Y, Ye P, Wu J, Liu Z, Zhang A, Ren L, Cheng C, Huang X, Wang K, Deng P, Wu C, Yue Z, Xia J. Inhibition of intimal hyperplasia in murine aortic allografts by the oral administration of the transforming growth factor-beta receptor I kinase inhibitor SD-208. J Heart Lung Transplant. 2014 Jun; 33(6):654-61. PMID: 24685405.
      Citations: 5     Fields:    Translation:AnimalsCells
    197. Cheng C, Wang Q, You W, Chen M, Xia J. MiRNAs as biomarkers of myocardial infarction: a meta-analysis. PLoS One. 2014; 9(2):e88566. PMID: 24533109.
      Citations: 33     Fields:    Translation:Humans
    198. Ung M, Ma X, Johnson KC, Christensen BC, Cheng C. Effect of estrogen receptor a binding on functional DNA methylation in breast cancer. Epigenetics. 2014 Apr; 9(4):523-32. PMID: 24434785.
      Citations: 15     Fields:    Translation:HumansCells
    199. Cheng C, Moore J, Greene C. Applications of bioinformatics to non-coding RNAs in the era of next-generation sequencing. Pac Symp Biocomput. 2014; 412-6. PMID: 24297566.
      Citations: 3     Fields:    Translation:Humans
    200. Jiang Q, Yang H, Cheng C, Xiong H, Liu S, Long J, Zhang Y, Fang W, Liu Z. Decreased P27 protein expression is correlated with the progression and poor prognosis of nasopharyngeal carcinoma. Diagn Pathol. 2013 Dec 20; 8:212. PMID: 24359578.
      Citations: 1     Fields:    Translation:HumansCells
    201. Tzeng DT, Tseng YT, Ung M, Liao IE, Liu CC, Cheng C. DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data. Nucleic Acids Res. 2014 Jan; 42(Database issue):D178-83. PMID: 24302579.
      Citations:    Fields:    Translation:HumansCells
    202. Johnson KC, Koestler DC, Cheng C, Christensen BC. Age-related DNA methylation in normal breast tissue and its relationship with invasive breast tumor methylation. Epigenetics. 2014 Feb; 9(2):268-75. PMID: 24196486.
      Citations: 24     Fields:    Translation:HumansCells
    203. Zhen Y, Liu Z, Yang H, Yu X, Wu Q, Hua S, Long X, Jiang Q, Song Y, Cheng C, Wang H, Zhao M, Fu Q, Lyu X, Chen Y, Fan Y, Liu Y, Li X, Fang W. Tumor suppressor PDCD4 modulates miR-184-mediated direct suppression of C-MYC and BCL2 blocking cell growth and survival in nasopharyngeal carcinoma. Cell Death Dis. 2013 Oct 24; 4:e872. PMID: 24157866.
      Citations: 55     Fields:    Translation:HumansCells
    204. Li D, Sulovari A, Cheng C, Zhao H, Kranzler HR, Gelernter J. Association of gamma-aminobutyric acid A receptor a2 gene (GABRA2) with alcohol use disorder. Neuropsychopharmacology. 2014 Mar; 39(4):907-18. PMID: 24136292.
      Citations: 38     Fields:    Translation:Humans
    205. Grant GD, Brooks L, Zhang X, Mahoney JM, Martyanov V, Wood TA, Sherlock G, Cheng C, Whitfield ML. Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors. Mol Biol Cell. 2013 Dec; 24(23):3634-50. PMID: 24109597.
      Citations: 70     Fields:    Translation:HumansCells
    206. Shi H, Huang Y, Cheng C, Ji G, Yang Y, Yuan H. Preparation and characterization of chain-like and peanut-like Fe3O4@SiO2 core-shell structure. J Nanosci Nanotechnol. 2013 Oct; 13(10):6953-60. PMID: 24245170.
      Citations:    Fields:    Translation:Cells
    207. Cheng C, Cai Z, Peng XS, Wong HN. Enantiomeric recognition of amino acid salts by macrocyclic crown ethers derived from enantiomerically pure 1,8,9,16-tetrahydroxytetraphenylenes. J Org Chem. 2013 Sep 06; 78(17):8562-73. PMID: 23927033.
      Citations: 3     Fields:    Translation:Cells
    208. Cheng C, Fu Y, Shen L, Gerstein M. Identification of yeast cell cycle regulated genes based on genomic features. BMC Syst Biol. 2013 Jul 29; 7:70. PMID: 23895232.
      Citations:    Fields:    Translation:AnimalsCells
    209. Zhu M, Liu CC, Cheng C. REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer. BMC Genomics. 2013 Jul 26; 14:504. PMID: 23885756.
      Citations: 11     Fields:    Translation:HumansCells
    210. Liu CM, Zheng GH, Cheng C, Sun JM. Quercetin protects mouse brain against lead-induced neurotoxicity. J Agric Food Chem. 2013 Aug 07; 61(31):7630-5. PMID: 23855546.
      Citations: 10     Fields:    Translation:AnimalsCells
    211. Cheng C, Ung M, Grant GD, Whitfield ML. Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs. PLoS Comput Biol. 2013; 9(7):e1003132. PMID: 23874175.
      Citations: 4     Fields:    Translation:HumansCells
    212. Yin J, Wu N, Zeng F, Cheng C, Kang K, Yang H. Paeonol induces apoptosis in human ovarian cancer cells. Acta Histochem. 2013 Oct; 115(8):835-9. PMID: 23768958.
      Citations: 5     Fields:    Translation:HumansCells
    213. Artinger EL, Mishra BP, Zaffuto KM, Li BE, Chung EK, Moore AW, Chen Y, Cheng C, Ernst P. An MLL-dependent network sustains hematopoiesis. Proc Natl Acad Sci U S A. 2013 Jul 16; 110(29):12000-5. PMID: 23744037.
      Citations: 32     Fields:    Translation:HumansCells
    214. Gao SG, Zeng C, Li LJ, Luo W, Zhang FJ, Tian J, Cheng C, Tu M, Xiong YL, Jiang W, Xu M, Lei GH. Correlation between senescence-associated beta-galactosidase expression in articular cartilage and disease severity of patients with knee osteoarthritis. Int J Rheum Dis. 2016 Mar; 19(3):226-32. PMID: 26112901.
      Citations: 13     Fields:    Translation:HumansCells
    215. Zhang J, Shao C, Wang J, Cheng C, Zuo C, Sun G, Cui B, Dong A, Liu Q, Kong L. Autoimmune pancreatitis: whole-body 18F-FDG PET/CT findings. Abdom Imaging. 2013 Jun; 38(3):543-9. PMID: 23223832.
      Citations: 6     Fields:    Translation:Humans
    216. Yip KY, Cheng C, Gerstein M. Machine learning and genome annotation: a match meant to be? Genome Biol. 2013 May 29; 14(5):205. PMID: 23731483.
      Citations: 16     Fields:    Translation:Humans
    217. Yang CC, Buck MJ, Chen MH, Chen YF, Lan HC, Chen JJ, Cheng C, Liu CC. Discovering chromatin motifs using FAIRE sequencing and the human diploid genome. BMC Genomics. 2013 May 08; 14:310. PMID: 23656909.
      Citations: 1     Fields:    Translation:HumansCells
    218. Lu X, Cheng C, Wang G, Shu X, Ma J, Tong Q. Synergistic enhancement of cancer therapy using a combination of fusion protein MG7-scFv/SEB and tumor necrosis factor alpha. Protein Pept Lett. 2013 Apr; 20(4):467-72. PMID: 23016583.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    219. Dong A, Wang Y, Dong H, Zhang J, Cheng C, Zuo C. FDG PET/CT findings of solid pseudopapillary tumor of the pancreas with CT and MRI correlation. Clin Nucl Med. 2013 Mar; 38(3):e118-24. PMID: 23354028.
      Citations: 10     Fields:    Translation:Humans
    220. Kittler R, Zhou J, Hua S, Ma L, Liu Y, Pendleton E, Cheng C, Gerstein M, White KP. A comprehensive nuclear receptor network for breast cancer cells. Cell Rep. 2013 Feb 21; 3(2):538-51. PMID: 23375374.
      Citations: 35     Fields:    Translation:HumansCells
    221. Liu Z, Long Y, Zhang Y, Huang W, Long X, Yang H, Long J, Cheng C, Fang W. Nuclear p27 expression confers a favorable outcome for nasopharyngeal carcinoma patients. Dis Markers. 2013; 35(6):925-32. PMID: 24427780.
      Citations: 1     Fields:    Translation:HumansCells
    222. Yip KY, Cheng C, Bhardwaj N, Brown JB, Leng J, Kundaje A, Rozowsky J, Birney E, Bickel P, Snyder M, Gerstein M. Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors. Genome Biol. 2012 Sep 26; 13(9):R48. PMID: 22950945.
      Citations: 128     Fields:    Translation:HumansCells
    223. Luo CQ, Yeung SC, Liu ZG, Meng J, Zhong FT, Cheng C. Pulmonary well-differentiated fetal adenocarcinoma with platelet-derived growth factor receptor (PDGFR)a expression. . 2012 Dec; 13(14):1384-9. PMID: 22986233.
      Citations:    
    224. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 06; 489(7414):57-74. PMID: 22955616.
      Citations: 5268     Fields:    Translation:HumansAnimalsCells
    225. Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Architecture of the human regulatory network derived from ENCODE data. Nature. 2012 Sep 06; 489(7414):91-100. PMID: 22955619.
      Citations: 611     Fields:    Translation:HumansCells
    226. Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y, Davis CA, Carninci P, Lassman T, Gingeras TR, Guigó R, Birney E, Weng Z, Snyder M, Gerstein M. Understanding transcriptional regulation by integrative analysis of transcription factor binding data. Genome Res. 2012 Sep; 22(9):1658-67. PMID: 22955978.
      Citations: 86     Fields:    Translation:HumansCells
    227. Yang H, Lei C, Cheng C, Feng Y, Zhang W, Petracco RG, Sak S. The antiapoptotic effect of galectin-3 in human endometrial cells under the regulation of estrogen and progesterone. Biol Reprod. 2012 Aug; 87(2):39. PMID: 22674388.
      Citations: 7     Fields:    Translation:HumansCells
    228. Wang F, Mi YJ, Chen XG, Wu XP, Liu Z, Chen SP, Liang YJ, Cheng C, To KK, Fu LW. Axitinib targeted cancer stemlike cells to enhance efficacy of chemotherapeutic drugs via inhibiting the drug transport function of ABCG2. Mol Med. 2012 Jul 18; 18:887-98. PMID: 22549112.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    229. Zhou WJ, Zhang X, Cheng C, Wang F, Wang XK, Liang YJ, To KK, Zhou W, Huang HB, Fu LW. Crizotinib (PF-02341066) reverses multidrug resistance in cancer cells by inhibiting the function of P-glycoprotein. Br J Pharmacol. 2012 Jul; 166(5):1669-83. PMID: 22233293.
      Citations: 33     Fields:    Translation:HumansAnimalsCells
    230. Liu CM, Sun YZ, Sun JM, Ma JQ, Cheng C. Protective role of quercetin against lead-induced inflammatory response in rat kidney through the ROS-mediated MAPKs and NF-?B pathway. Biochim Biophys Acta. 2012 Oct; 1820(10):1693-703. PMID: 22728154.
      Citations: 31     Fields:    Translation:AnimalsCells
    231. Cheng C, Liu ZG, Zhang H, Xie JD, Chen XG, Zhao XQ, Wang F, Liang YJ, Chen LK, Singh S, Chen JJ, Talele TT, Chen ZS, Zhong FT, Fu LW. Enhancing chemosensitivity in ABCB1- and ABCG2-overexpressing cells and cancer stem-like cells by an Aurora kinase inhibitor CCT129202. Mol Pharm. 2012 Jul 02; 9(7):1971-82. PMID: 22632055.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    232. Dong X, Greven MC, Kundaje A, Djebali S, Brown JB, Cheng C, Gingeras TR, Gerstein M, Guigó R, Birney E, Weng Z. Modeling gene expression using chromatin features in various cellular contexts. Genome Biol. 2012 Jun 13; 13(9):R53. PMID: 22950368.
      Citations: 101     Fields:    Translation:HumansCells
    233. Cheng C, Yan KK, Hwang W, Qian J, Bhardwaj N, Rozowsky J, Lu ZJ, Niu W, Alves P, Kato M, Snyder M, Gerstein M. Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. PLoS Comput Biol. 2011 Nov; 7(11):e1002190. PMID: 22125477.
      Citations: 42     Fields:    Translation:Animals
    234. Yang H, Cheng C, Zhang W. Average rank-based score to measure deregulation of molecular pathway gene sets. PLoS One. 2011; 6(11):e27579. PMID: 22096597.
      Citations: 5     Fields:    Translation:HumansCells
    235. Cheng C, Shou C, Yip KY, Gerstein MB. Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors. Genome Biol. 2011 Nov 07; 12(11):R111. PMID: 22060676.
      Citations: 11     Fields:    Translation:AnimalsCells
    236. Cheng C, Min R, Gerstein M. TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles. Bioinformatics. 2011 Dec 01; 27(23):3221-7. PMID: 22039215.
      Citations: 32     Fields:    Translation:AnimalsCells
    237. Ye L, Xu A, Cheng C, Zhang L, Huo C, Huang F, Xu H, Li R. Design and synthesis of affinity ligands and relation of their structure with adsorption of proteins. J Sep Sci. 2011 Nov; 34(22):3145-50. PMID: 22015803.
      Citations: 1     Fields:    Translation:Cells
    238. Cheng C, Gerstein M. Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells. Nucleic Acids Res. 2012 Jan; 40(2):553-68. PMID: 21926158.
      Citations: 54     Fields:    Translation:AnimalsCells
    239. Yang H, Taylor HS, Lei C, Cheng C, Zhang W. Hormonal regulation of galectin 3 in trophoblasts and its effects on endometrium. Reprod Sci. 2011 Nov; 18(11):1118-27. PMID: 21555510.
      Citations: 5     Fields:    Translation:HumansCells
    240. A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011 Apr; 9(4):e1001046. PMID: 21526222.
      Citations: 648     Fields:    Translation:HumansCells
    241. Nègre N, Brown CD, Ma L, Bristow CA, Miller SW, Wagner U, Kheradpour P, Eaton ML, Loriaux P, Sealfon R, Li Z, Ishii H, Spokony RF, Chen J, Hwang L, Cheng C, Auburn RP, Davis MB, Domanus M, Shah PK, Morrison CA, Zieba J, Suchy S, Senderowicz L, Victorsen A, Bild NA, Grundstad AJ, Hanley D, MacAlpine DM, Mannervik M, Venken K, Bellen H, White R, Gerstein M, Russell S, Grossman RL, Ren B, Posakony JW, Kellis M, White KP. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24; 471(7339):527-31. PMID: 21430782.
      Citations: 246     Fields:    Translation:AnimalsCells
    242. Cheng C, Yan KK, Yip KY, Rozowsky J, Alexander R, Shou C, Gerstein M. A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. Genome Biol. 2011; 12(2):R15. PMID: 21324173.
      Citations: 48     Fields:    Translation:HumansAnimalsCells
    243. Pang K, Cheng C, Xuan Z, Sheng H, Ma X. Understanding protein evolutionary rate by integrating gene co-expression with protein interactions. BMC Syst Biol. 2010 Dec 30; 4:179. PMID: 21190591.
      Citations: 6     Fields:    Translation:HumansCells
    244. Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A, Ikegami K, Alves P, Chateigner A, Perry M, Morris M, Auerbach RK, Feng X, Leng J, Vielle A, Niu W, Rhrissorrakrai K, Agarwal A, Alexander RP, Barber G, Brdlik CM, Brennan J, Brouillet JJ, Carr A, Cheung MS, Clawson H, Contrino S, Dannenberg LO, Dernburg AF, Desai A, Dick L, Dosé AC, Du J, Egelhofer T, Ercan S, Euskirchen G, Ewing B, Feingold EA, Gassmann R, Good PJ, Green P, Gullier F, Gutwein M, Guyer MS, Habegger L, Han T, Henikoff JG, Henz SR, Hinrichs A, Holster H, Hyman T, Iniguez AL, Janette J, Jensen M, Kato M, Kent WJ, Kephart E, Khivansara V, Khurana E, Kim JK, Kolasinska-Zwierz P, Lai EC, Latorre I, Leahey A, Lewis S, Lloyd P, Lochovsky L, Lowdon RF, Lubling Y, Lyne R, MacCoss M, Mackowiak SD, Mangone M, McKay S, Mecenas D, Merrihew G, Miller DM, Muroyama A, Murray JI, Ooi SL, Pham H, Phippen T, Preston EA, Rajewsky N, Rätsch G, Rosenbaum H, Rozowsky J, Rutherford K, Ruzanov P, Sarov M, Sasidharan R, Sboner A, Scheid P, Segal E, Shin H, Shou C, Slack FJ, Slightam C, Smith R, Spencer WC, Stinson EO, Taing S, Takasaki T, Vafeados D, Voronina K, Wang G, Washington NL, Whittle CM, Wu B, Yan KK, Zeller G, Zha Z, Zhong M, Zhou X, Ahringer J, Strome S, Gunsalus KC, Micklem G, Liu XS, Reinke V, Kim SK, Hillier LW, Henikoff S, Piano F, Snyder M, Stein L, Lieb JD, Waterston RH. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science. 2010 Dec 24; 330(6012):1775-87. PMID: 21177976.
      Citations: 479     Fields:    Translation:AnimalsCells
    245. Lu ZJ, Yip KY, Wang G, Shou C, Hillier LW, Khurana E, Agarwal A, Auerbach R, Rozowsky J, Cheng C, Kato M, Miller DM, Slack F, Snyder M, Waterston RH, Reinke V, Gerstein MB. Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 2011 Feb; 21(2):276-85. PMID: 21177971.
      Citations: 34     Fields:    Translation:AnimalsCells
    246. Niu W, Lu ZJ, Zhong M, Sarov M, Murray JI, Brdlik CM, Janette J, Chen C, Alves P, Preston E, Slightham C, Jiang L, Hyman AA, Kim SK, Waterston RH, Gerstein M, Snyder M, Reinke V. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Res. 2011 Feb; 21(2):245-54. PMID: 21177963.
      Citations: 116     Fields:    Translation:AnimalsCells
    247. Ye L, Zhang H, Xu H, Zou Q, Cheng C, Dong D, Xu Y, Li R. Phenazine-1-carboxylic acid derivatives: design, synthesis and biological evaluation against Rhizoctonia solani Kuhn. Bioorg Med Chem Lett. 2010 Dec 15; 20(24):7369-71. PMID: 21055934.
      Citations: 1     Fields:    Translation:Animals
    248. Lu X, Cheng C, Zhu S, Yang Y, Zheng L, Wang G, Shu X, Wu K, Liu K, Tong Q. SATB1 is an independent prognostic marker for gastric cancer in a Chinese population. Oncol Rep. 2010 Oct; 24(4):981-7. PMID: 20811679.
      Citations: 41     Fields:    Translation:Humans
    249. Cheng C, Lu X, Wang G, Zheng L, Shu X, Zhu S, Liu K, Wu K, Tong Q. Expression of SATB1 and heparanase in gastric cancer and its relationship to clinicopathologic features. APMIS. 2010 Nov; 118(11):855-63. PMID: 20955458.
      Citations: 46     Fields:    Translation:Humans
    250. Khurana E, Lam HY, Cheng C, Carriero N, Cayting P, Gerstein MB. Segmental duplications in the human genome reveal details of pseudogene formation. Nucleic Acids Res. 2010 Nov; 38(20):6997-7007. PMID: 20615899.
      Citations: 12     Fields:    Translation:HumansCells
    251. Lee Y, Yang X, Huang Y, Fan H, Zhang Q, Wu Y, Li J, Hasina R, Cheng C, Lingen MW, Gerstein MB, Weichselbaum RR, Xing HR, Lussier YA. Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. PLoS Comput Biol. 2010 Apr 01; 6(4):e1000730. PMID: 20369013.
      Citations: 80     Fields:    Translation:HumansCells
    252. Pan J, Cheng C, Verstovsek S, Chen Q, Jin Y, Cao Q. The BH3-mimetic GX15-070 induces autophagy, potentiates the cytotoxicity of carboplatin and 5-fluorouracil in esophageal carcinoma cells. Cancer Lett. 2010 Jul 28; 293(2):167-74. PMID: 20153924.
      Citations: 24     Fields:    Translation:HumansCells
    253. Zou Y, Cheng C, Omura-Minamisawa M, Kang Y, Hara T, Guan X, Inoue T. The suppression of hypoxia-inducible factor and vascular endothelial growth factor by siRNA does not affect the radiation sensitivity of multicellular tumor spheroids. J Radiat Res. 2010; 51(1):47-55. PMID: 19959878.
      Citations: 7     Fields:    Translation:HumansCells
    254. Wang Y, Huang Y, Wang J, Cheng C, Huang W, Lu P, Xu YN, Wang P, Yan N, Shi Y. Structure of the formate transporter FocA reveals a pentameric aquaporin-like channel. Nature. 2009 Nov 26; 462(7272):467-72. PMID: 19940917.
      Citations: 45     Fields:    Translation:Cells
    255. Ge H, Wei M, Fabrizio P, Hu J, Cheng C, Longo VD, Li LM. Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant. Nucleic Acids Res. 2010 Jan; 38(1):143-58. PMID: 19880387.
      Citations: 6     Fields:    Translation:AnimalsCells
    256. Cheng C, Bhardwaj N, Gerstein M. The relationship between the evolution of microRNA targets and the length of their UTRs. BMC Genomics. 2009 Sep 14; 10:431. PMID: 19751524.
      Citations: 45     Fields:    Translation:HumansAnimalsCells
    257. Cheng C, Fu X, Alves P, Gerstein M. mRNA expression profiles show differential regulatory effects of microRNAs between estrogen receptor-positive and estrogen receptor-negative breast cancer. Genome Biol. 2009; 10(9):R90. PMID: 19723326.
      Citations: 46     Fields:    Translation:Humans
    258. Cheng C, Li LM, Alves P, Gerstein M. Systematic identification of transcription factors associated with patient survival in cancers. BMC Genomics. 2009 May 15; 10:225. PMID: 19442316.
      Citations: 7     Fields:    Translation:Humans
    259. Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ. Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization. Genes Dev. 2009 Mar 01; 23(5):619-32. PMID: 19240126.
      Citations: 67     Fields:    Translation:AnimalsCells
    260. Shi X, Jin Y, Cheng C, Zhang H, Zou W, Zheng Q, Lu Z, Chen Q, Lai Y, Pan J. Triptolide inhibits Bcr-Abl transcription and induces apoptosis in STI571-resistant chronic myelogenous leukemia cells harboring T315I mutation. Clin Cancer Res. 2009 Mar 01; 15(5):1686-97. PMID: 19240172.
      Citations: 42     Fields:    Translation:HumansAnimalsCells
    261. Cheng C, Omura-Minamisawa M, Kang Y, Hara T, Koike I, Inoue T. Quantification of circulating cell-free DNA in the plasma of cancer patients during radiation therapy. Cancer Sci. 2009 Feb; 100(2):303-9. PMID: 19200259.
      Citations: 17     Fields:    Translation:HumansAnimalsCells
    262. Pan J, Song E, Cheng C, Lee MH, Yeung SC. Farnesyltransferase inhibitors-induced autophagy: alternative mechanisms? Autophagy. 2009 Jan; 5(1):129-31. PMID: 19066466.
      Citations: 4     Fields:    Translation:AnimalsCells
    263. Wang G, Zhou Z, Cheng C, Yao J, Yang Z. Osthol and isopimpinellin from Fructus cnidii for the control of Dactylogyrus intermedius in Carassius auratus. Vet Parasitol. 2008 Nov 25; 158(1-2):144-51. PMID: 18940522.
      Citations: 14     Fields:    Translation:Animals
    264. Hara T, Omura-Minamisawa M, Kang Y, Cheng C, Inoue T. Flavopiridol potentiates the cytotoxic effects of radiation in radioresistant tumor cells in which p53 is mutated or Bcl-2 is overexpressed. Int J Radiat Oncol Biol Phys. 2008 Aug 01; 71(5):1485-95. PMID: 18640498.
      Citations: 10     Fields:    Translation:HumansCells
    265. Zhang J, Cheng C, He CL, Zhou YJ, Cao Y. The expression of Bcl-XL, Bcl-XS and p27Kip1 in topotecan-induced apoptosis in hepatoblastoma HepG2 cell line. Cancer Invest. 2008 Jun; 26(5):456-63. PMID: 18568767.
      Citations: 3     Fields:    Translation:HumansCells
    266. Jie G, Zhang J, Wang D, Cheng C, Chen HY, Zhu JJ. Electrochemiluminescence immunosensor based on CdSe nanocomposites. Anal Chem. 2008 Jun 01; 80(11):4033-9. PMID: 18435547.
      Citations: 6     Fields:    Translation:HumansCells
    267. Cheng C, Li LM. Inferring microRNA activities by combining gene expression with microRNA target prediction. PLoS One. 2008 Apr 23; 3(4):e1989. PMID: 18431476.
      Citations: 50     Fields:    Translation:HumansCells
    268. Ge H, Cheng C, Li LM. A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays. BMC Bioinformatics. 2008 Apr 14; 9:194. PMID: 18410691.
      Citations: 5     Fields:    Translation:Cells
    269. Cheng C, Li LM. Systematic identification of cell cycle regulated transcription factors from microarray time series data. BMC Genomics. 2008 Mar 03; 9:116. PMID: 18315882.
      Citations: 14     Fields:    Translation:Animals
    270. Wei M, Fabrizio P, Hu J, Ge H, Cheng C, Li L, Longo VD. Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9. PLoS Genet. 2008 Jan; 4(1):e13. PMID: 18225956.
      Citations: 183     Fields:    Translation:AnimalsCells
    271. Cheng C, Yan X, Sun F, Li LM. Inferring activity changes of transcription factors by binding association with sorted expression profiles. BMC Bioinformatics. 2007 Nov 16; 8:452. PMID: 18021409.
      Citations: 39     Fields:    Translation:Cells
    272. Chen L, Zhao YL, Liu Q, Cheng C, Piao CR. Domino reaction of alpha-acetyl-alpha-carbamoyl ketene dithioacetals with Vilsmeier reagents: a novel and efficient synthesis of 4-halogenated 2(1H)-pyridinones. J Org Chem. 2007 Nov 23; 72(24):9259-63. PMID: 17975931.
      Citations: 1     Fields:    
    273. Cheng C, Fabrizio P, Ge H, Wei M, Longo VD, Li LM. Significant and systematic expression differentiation in long-lived yeast strains. PLoS One. 2007 Oct 31; 2(10):e1095. PMID: 17971858.
      Citations: 10     Fields:    Translation:AnimalsCells
    274. Cheng C, Fabrizio P, Ge H, Longo VD, Li LM. Inference of transcription modification in long-live yeast strains from their expression profiles. BMC Genomics. 2007 Jul 06; 8:219. PMID: 17617911.
      Citations: 18     Fields:    Translation:AnimalsCells
    275. Cheng C, Ma X, Yan X, Sun F, Li LM. MARD: a new method to detect differential gene expression in treatment-control time courses. Bioinformatics. 2006 Nov 01; 22(21):2650-7. PMID: 16928738.
      Citations: 3     Fields:    Translation:Animals
    276. Fabrizio P, Gattazzo C, Battistella L, Wei M, Cheng C, McGrew K, Longo VD. Sir2 blocks extreme life-span extension. Cell. 2005 Nov 18; 123(4):655-67. PMID: 16286010.
      Citations: 160     Fields:    Translation:AnimalsCells
    277. Cheng C, Li LM. Sub-array normalization subject to differentiation. Nucleic Acids Res. 2005; 33(17):5565-73. PMID: 16204457.
      Citations: 7     Fields:    Translation:HumansAnimals
    278. Gu LJ, Wu YL, Feng WN, Weng YM, Cheng C, Zhong WZ, Huang SH, Yang P. [Treatment of non-small-cell lung cancer with paraplatin given by two different dosage calculation methods]. Zhonghua Zhong Liu Za Zhi. 2005 Jan; 27(1):29-32. PMID: 15771794.
      Citations:    Fields:    Translation:HumansCTClinical Trials
    279. Cheng H, Wu Y, Gu L, Feng W, Weng Y, Cheng C, Zhong W, Huang S. [The preliminary results of a phase II randomized clinical trial of high-dose toremifene chemosensitization in stage IIIB/IV non-small cell lung cancer]. Zhongguo Fei Ai Za Zhi. 2003 Oct 20; 6(5):335-8. PMID: 21306673.
      Citations: 2     Fields:    
    280. Ye X, Ji C, Huang Q, Cheng C, Tang R, Xu J, Zeng L, Dai J, Wu Q, Gu S, Xie Y, Mao Y. Isolation and characterization of a human putative receptor protein kinase cDNA STYK1. Mol Biol Rep. 2003 Jun; 30(2):91-6. PMID: 12841579.
      Citations: 6     Fields:    Translation:HumansCells
    281. Ye X, Xu J, Cheng C, Yin G, Zeng L, Ji C, Gu S, Xie Y, Mao Y. Isolation and characterization of a novel human putative anemia-related gene homologous to mouse sideroflexin. Biochem Genet. 2003 Apr; 41(3-4):119-25. PMID: 12670026.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    282. Cheng C, Xu J, Ye X, Dai J, Wu Q, Zeng L, Wang L, Zhao W, Ji C, Gu S, Xie Y, Mao Y. Cloning, expression and characterization of a novel human VMP gene. Mol Biol Rep. 2002 Sep; 29(3):281-6. PMID: 12463420.
      Citations: 2     Fields:    Translation:HumansCells
    283. Cheng C, Zhou ZX, Xu M, Zhao W, Xu J, Zeng L, Huang Y, Wu QH, Dai JF, Ying K, Xie Y, Mao YM. [Tumor relevance analysis of a highly conserved gene by using gene microarray hybridization]. Yi Chuan. 2002 May; 24(3):227-31. PMID: 16126669.
      Citations:    Fields:    
    284. Cheng C, Ying K, Xu M, Zhao W, Zhou Z, Huang Y, Wang W, Xu J, Zeng L, Xie Y, Mao Y. Cloning and characterization of a novel human transcription factor AP-2 beta like gene (TFAP2BL1). Int J Biochem Cell Biol. 2002 Jan; 34(1):78-86. PMID: 11733187.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    285. Wang W, Huang Y, Zhou Z, Tang R, Zhao W, Zeng L, Xu M, Cheng C, Gu S, Ying K, Xie Y, Mao Y. Identification and characterization of AGTRAP, a human homolog of murine Angiotensin II Receptor-Associated Protein (Agtrap). Int J Biochem Cell Biol. 2002 Jan; 34(1):93-102. PMID: 11733189.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    286. Xu J, Zhou Z, Zeng L, Huang Y, Zhao W, Cheng C, Xu M, Xie Y, Mao Y. Cloning, expression and characterization of a novel human REPS1 gene. Biochim Biophys Acta. 2001 Dec 03; 1522(2):118-21. PMID: 11750063.
      Citations: 6     Fields:    Translation:HumansCells
    287. Xu M, Zhou Z, Cheng C, Zhao W, Tang R, Huang Y, Wang W, Xu J, Zeng L, Xie Y, Mao Y. Cloning and characterization of a novel human TEKTIN1 gene. Int J Biochem Cell Biol. 2001 Dec; 33(12):1172-82. PMID: 11606253.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    288. Wu Q, Xu M, Cheng C, Zhou Z, Huang Y, Zhao W, Zeng L, Xu J, Fu X, Ying K, Xie Y, Mao Y. Molecular cloning and characterization of a novel Dehydrogenase/reductase (SDR family) member 1 genea from human fetal brain. Mol Biol Rep. 2001; 28(4):193-8. PMID: 12153138.
      Citations: 1     Fields:    Translation:HumansCells
    289. Zeng L, Zhou Z, Xu J, Zhao W, Wang W, Huang Y, Cheng C, Xu M, Xie Y, Mao Y. Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain. Cytogenet Cell Genet. 2001; 95(1-2):43-7. PMID: 11978968.
      Citations: 6     Fields:    Translation:HumansCells
    290. Huang Y, Tang R, Dai J, Gu S, Zhao W, Cheng C, Xu M, Zhou Z, Ying K, Xi Y, Mao Y. A novel human hydroxysteroid dehydrogenase like 1 gene (HSDL1) is highly expressed in reproductive tissues. Mol Biol Rep. 2001; 28(4):185-91. PMID: 12153137.
      Citations: 5     Fields:    Translation:HumansCells
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