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Institute for Clinical and Translational Research

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ALEKSANDAR MILOSAVLJEVIC

TitleProfessor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
DivisionMolecular & Human Genetics
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    R01HG002583     (MILOSAVLJEVIC, ALEKSANDAR)Jul 19, 2002 - Mar 31, 2006
    NIH/NHGRI
    Clone-Array Pooled Shotgun Indexing
    Role: Principal Investigator
    U01RR018464     (MILOSAVLJEVIC, ALEKSANDAR)Sep 30, 2002 - Aug 31, 2005
    NIH/NCRR
    Clone Pooling Methods for Physical Mapping
    Role: Principal Investigator
    R01HG004009     (MILOSAVLJEVIC, ALEKSANDAR)Aug 15, 2006 - Mar 31, 2010
    NIH/NHGRI
    Genboree System for Translational Studies of Genome Variation
    Role: Principal Investigator
    R33CA114151     (MILOSAVLJEVIC, ALEKSANDAR)May 1, 2007 - Apr 30, 2011
    NIH/NCI
    Multiplexed Methods for the Study of Chromosomal Aberrations in Cancer
    Role: Principal Investigator
    R21HG004554     (MILOSAVLJEVIC, ALEKSANDAR)Jul 1, 2007 - Jun 30, 2010
    NIH/NHGRI
    Comprehensive High-throughput Mapping of Cancer Genomes
    Role: Principal Investigator
    U01DA025956     (MILOSAVLJEVIC, ALEKSANDAR)Sep 20, 2008 - Jul 31, 2014
    NIH/NIDA
    Epigenomics Data Analysis and Coordination Center at Baylor College of Medicine
    Role: Principal Investigator
    R01CA163849     (JUSTICE, MONICA J.)Jul 23, 2013 - May 31, 2018
    NIH/NCI
    The pluripotency regulator Prdm14 initiates cancer by epigenetic mechanisms
    Role: Co-Principal Investigator
    U54DA036134     (MILOSAVLJEVIC, ALEKSANDAR)Aug 1, 2013 - Jul 31, 2018
    NIH/NIDA
    DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS
    Role: Principal Investigator
    R13ES025509     (STAMATOYANNOPOULOS, JOHN A)May 1, 2015 - Apr 30, 2016
    NIH/NIEHS
    Epigenomics 2015: A Roadmap to the Living Genome
    Role: Co-Principal Investigator
    U54DA049098     (MILOSAVLJEVIC, ALEKSANDAR)Aug 15, 2019 - Jul 31, 2023
    NIH/NIDA
    DATA MANAGEMENT AND RESOURCE REPOSITORY FOR THE exRNA ATLAS PHASE II
    Role: Principal Investigator
    UG3TR002881     (GHIRAN, IONITA CALIN)Sep 16, 2019 - Jun 30, 2021
    NIH/NCATS
    Integrative, multi-parametric characterization of the EV surface protein and nucleic acid landscape by nano-flow and sorting cytometry
    Role: Co-Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Milosavljevic AR, Jänkälä K, Rankovic ML, Canon F, Bozek J, Nicolas C, Giuliani A. Oxygen K-shell spectroscopy of isolated progressively solvated peptide. Phys Chem Chem Phys. 2020 Jun 21; 22(23):12909-12917. PMID: 32347253.
      View in: PubMed
    2. Velicki L, Milosavljevic AM, Suntic M, Lazarevic A. Polymorphic presentation of an acute aortic syndrome. J Card Surg. 2020 May; 35(5):1110-1111. PMID: 32293043.
      View in: PubMed
    3. Karan JV, Milosavljevic AM, Stanic KB, Velicki L. Giant left anterior descending artery aneurysm. Postepy Kardiol Interwencyjnej. 2020 Mar; 16(1):112-113. PMID: 32368246.
      View in: PubMed
    4. Lucero R, Zappulli V, Sammarco A, Murillo OD, Cheah PS, Srinivasan S, Tai E, Ting DT, Wei Z, Roth ME, Laurent LC, Krichevsky AM, Breakefield XO, Milosavljevic A. Glioma-Derived miRNA-Containing Extracellular Vesicles Induce Angiogenesis by Reprogramming Brain Endothelial Cells. Cell Rep. 2020 Feb 18; 30(7):2065-2074.e4. PMID: 32075753.
      View in: PubMed
    5. Decamps C, Privé F, Bacher R, Jost D, Waguet A, Houseman EA, Lurie E, Lutsik P, Milosavljevic A, Scherer M, Blum MGB, Richard M. Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinformatics. 2020 Jan 13; 21(1):16. PMID: 31931698.
      View in: PubMed
    6. Schürmann R, Ebel K, Nicolas C, Milosavljevic AR, Bald I. Role of Valence Band States and Plasmonic Enhancement in Electron-Transfer-Induced Transformation of Nitrothiophenol. J Phys Chem Lett. 2019 Jun 06; 10(11):3153-3158. PMID: 31117676.
      View in: PubMed
    7. Das S, Ansel KM, Bitzer M, Breakefield XO, Charest A, Galas DJ, Gerstein MB, Gupta M, Milosavljevic A, McManus MT, Patel T, Raffai RL, Rozowsky J, Roth ME, Saugstad JA, Van Keuren-Jensen K, Weaver AM, Laurent LC. The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research. Cell. 2019 04 04; 177(2):231-242. PMID: 30951667.
      View in: PubMed
    8. Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A. exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids. Cell. 2019 04 04; 177(2):463-477.e15. PMID: 30951672.
      View in: PubMed
    9. Rozowsky J, Kitchen RR, Park JJ, Galeev TR, Diao J, Warrell J, Thistlethwaite W, Subramanian SL, Milosavljevic A, Gerstein M. exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling. Cell Syst. 2019 04 24; 8(4):352-357.e3. PMID: 30956140.
      View in: PubMed
    10. Vogel S, Ebel K, Schürmann RM, Heck C, Meiling T, Milosavljevic AR, Giuliani A, Bald I. Vacuum-UV and Low-Energy Electron-Induced DNA Strand Breaks - Influence of the DNA Sequence and Substrate. Chemphyschem. 2019 03 18; 20(6):823-830. PMID: 30719805.
      View in: PubMed
    11. Vogel S, Ebel K, Heck C, Schürmann RM, Milosavljevic AR, Giuliani A, Bald I. Vacuum-UV induced DNA strand breaks - influence of the radiosensitizers 5-bromouracil and 8-bromoadenine. Phys Chem Chem Phys. 2019 Jan 23; 21(4):1972-1979. PMID: 30633275.
      View in: PubMed
    12. Burrage LC, Thistlethwaite L, Stroup BM, Sun Q, Miller MJ, Nagamani SCS, Craigen W, Scaglia F, Sutton VR, Graham B, Kennedy AD, Milosavljevic A, Lee BH, Elsea SH. Untargeted metabolomic profiling reveals multiple pathway perturbations and new clinical biomarkers in urea cycle disorders. Genet Med. 2019 09; 21(9):1977-1986. PMID: 30670878.
      View in: PubMed
    13. Carrero I, Liu HC, Sikora AG, Milosavljevic A. Histoepigenetic analysis of HPV- and tobacco-associated head and neck cancer identifies both subtype-specific and common therapeutic targets despite divergent microenvironments. Oncogene. 2019 05; 38(19):3551-3568. PMID: 30655605.
      View in: PubMed
    14. Jonjev ŽS, Milosavljevic AM, Bjeljac I, Todic M, Koruga S. Tricuspid valve avulsion 3 years after blunt chest trauma. J Card Surg. 2018 Dec; 33(12):787-788. PMID: 30537193.
      View in: PubMed
    15. Velicki L, Jakovljevic DG, Milosavljevic AM, Todic M, Rajic J, Fabri M. Dynamic right ventricular outflow tract obstruction caused by a large interventricular membranous septal aneurysm. Neth Heart J. 2018 Nov; 26(11):575-576. PMID: 30141029.
      View in: PubMed
    16. Dolman L, Page A, Babb L, Freimuth RR, Arachchi H, Bizon C, Brush M, Fiume M, Haendel M, Hansen DP, Milosavljevic A, Patel RY, Pawliczek P, Yates AD, Rehm HL. ClinGen advancing genomic data-sharing standards as a GA4GH driver project. Hum Mutat. 2018 11; 39(11):1686-1689. PMID: 30311379.
      View in: PubMed
    17. Pawliczek P, Patel RY, Ashmore LR, Jackson AR, Bizon C, Nelson T, Powell B, Freimuth RR, Strande N, Shah N, Paithankar S, Wright MW, Dwight S, Zhen J, Landrum M, McGarvey P, Babb L, Plon SE, Milosavljevic A. ClinGen Allele Registry links information about genetic variants. Hum Mutat. 2018 11; 39(11):1690-1701. PMID: 30311374.
      View in: PubMed
    18. Webber EM, Hunter JE, Biesecker LG, Buchanan AH, Clarke EV, Currey E, Dagan-Rosenfeld O, Lee K, Lindor NM, Martin CL, Milosavljevic A, Mittendorf KF, Muessig KR, O'Daniel JM, Patel RY, Ramos EM, Rego S, Slavotinek AM, Sobriera NLM, Weaver MA, Williams MS, Evans JP, Goddard KAB. Evidence-based assessments of clinical actionability in the context of secondary findings: Updates from ClinGen's Actionability Working Group. Hum Mutat. 2018 11; 39(11):1677-1685. PMID: 30311382.
      View in: PubMed
    19. Forbes R, De Fanis A, Bomme C, Rolles D, Pratt ST, Powis I, Besley NA, Simon M, Nandi S, Milosavljevic AR, Nicolas C, Bozek JD, Underwood JG, Holland DMP. Photoionization of the iodine 3d, 4s, and 4p orbitals in methyl iodide. J Chem Phys. 2018 Oct 14; 149(14):144302. PMID: 30316287.
      View in: PubMed
    20. Forbes R, De Fanis A, Bomme C, Rolles D, Pratt ST, Powis I, Besley NA, Nandi S, Milosavljevic AR, Nicolas C, Bozek JD, Underwood JG, Holland DMP. Auger electron angular distributions following excitation or ionization of the I 3d level in methyl iodide. J Chem Phys. 2018 Sep 07; 149(9):094304. PMID: 30195315.
      View in: PubMed
    21. Onuchic V, Lurie E, Carrero I, Pawliczek P, Patel RY, Rozowsky J, Galeev T, Huang Z, Altshuler RC, Zhang Z, Harris RA, Coarfa C, Ashmore L, Bertol JW, Fakhouri WD, Yu F, Kellis M, Gerstein M, Milosavljevic A. Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci. Science. 2018 09 28; 361(6409). PMID: 30139913.
      View in: PubMed
    22. Milosavljevic AR, Božanic DK, Sadhu S, Vukmirovic N, Dojcilovic R, Sapkota P, Huang W, Bozek J, Nicolas C, Nahon L, Ptasinska S. Electronic Properties of Free-Standing Surfactant-Capped Lead Halide Perovskite Nanocrystals Isolated in Vacuo. J Phys Chem Lett. 2018 Jul 05; 9(13):3604-3611. PMID: 29902010.
      View in: PubMed
    23. Milosavljevic AR, Rousseau P, Domaracka A, Huber BA, Giuliani A. Multiple electron capture from isolated protein poly-anions in collision with slow highly charged ions. Phys Chem Chem Phys. 2017 Aug 02; 19(30):19691-19698. PMID: 28524199.
      View in: PubMed
    24. Patel RY, Shah N, Jackson AR, Ghosh R, Pawliczek P, Paithankar S, Baker A, Riehle K, Chen H, Milosavljevic S, Bizon C, Rynearson S, Nelson T, Jarvik GP, Rehm HL, Harrison SM, Azzariti D, Powell B, Babb L, Plon SE, Milosavljevic A. ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants. Genome Med. 2017 01 12; 9(1):3. PMID: 28081714.
      View in: PubMed
    25. Onuchic V, Hartmaier RJ, Boone DN, Samuels ML, Patel RY, White WM, Garovic VD, Oesterreich S, Roth ME, Lee AV, Milosavljevic A. Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types. Cell Rep. 2016 11 15; 17(8):2075-2086. PMID: 27851969.
      View in: PubMed
    26. Heale BS, Overby CL, Del Fiol G, Rubinstein WS, Maglott DR, Nelson TH, Milosavljevic A, Martin CL, Goehringer SR, Freimuth R, Williams MS. Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard. Appl Clin Inform. 2016 08 31; 7(3):817-31. PMID: 27579472.
      View in: PubMed
    27. Amendola LM, Jarvik GP, Leo MC, McLaughlin HM, Akkari Y, Amaral MD, Berg JS, Biswas S, Bowling KM, Conlin LK, Cooper GM, Dorschner MO, Dulik MC, Ghazani AA, Ghosh R, Green RC, Hart R, Horton C, Johnston JJ, Lebo MS, Milosavljevic A, Ou J, Pak CM, Patel RY, Punj S, Richards CS, Salama J, Strande NT, Yang Y, Plon SE, Biesecker LG, Rehm HL. Performance of ACMG-AMP Variant-Interpretation Guidelines among Nine Laboratories in the Clinical Sequencing Exploratory Research Consortium. Am J Hum Genet. 2016 07 07; 99(1):247. PMID: 27392081.
      View in: PubMed
    28. Amendola LM, Jarvik GP, Leo MC, McLaughlin HM, Akkari Y, Amaral MD, Berg JS, Biswas S, Bowling KM, Conlin LK, Cooper GM, Dorschner MO, Dulik MC, Ghazani AA, Ghosh R, Green RC, Hart R, Horton C, Johnston JJ, Lebo MS, Milosavljevic A, Ou J, Pak CM, Patel RY, Punj S, Richards CS, Salama J, Strande NT, Yang Y, Plon SE, Biesecker LG, Rehm HL. Performance of ACMG-AMP Variant-Interpretation Guidelines among Nine Laboratories in the Clinical Sequencing Exploratory Research Consortium. Am J Hum Genet. 2016 06 02; 98(6):1067-1076. PMID: 27181684.
      View in: PubMed
    29. Cheung KH, Keerthikumar S, Roncaglia P, Subramanian SL, Roth ME, Samuel M, Anand S, Gangoda L, Gould S, Alexander R, Galas D, Gerstein MB, Hill AF, Kitchen RR, Lötvall J, Patel T, Procaccini DC, Quesenberry P, Rozowsky J, Raffai RL, Shypitsyna A, Su AI, Théry C, Vickers K, Wauben MH, Mathivanan S, Milosavljevic A, Laurent LC. Extending gene ontology in the context of extracellular RNA and vesicle communication. J Biomed Semantics. 2016; 7:19. PMID: 27076901.
      View in: PubMed
    30. Dojcilovic R, Pajovic JD, Božanic DK, Vodnik VV, Dimitrijevic-Brankovic S, Milosavljevic AR, Kašcàkovà S, Réfrégiers M, Djokovic V. A fluorescent nanoprobe for single bacterium tracking: functionalization of silver nanoparticles with tryptophan to probe the nanoparticle accumulation with single cell resolution. Analyst. 2016 Mar 21; 141(6):1988-96. PMID: 26858997.
      View in: PubMed
    31. Rankovic MLj, Canon F, Nahon L, Giuliani A, Milosavljevic AR. VUV action spectroscopy of protonated leucine-enkephalin peptide in the 6-14 eV range. J Chem Phys. 2015 Dec 28; 143(24):244311. PMID: 26723675.
      View in: PubMed
    32. Overby CL, Heale B, Aronson S, Cherry JM, Dwight S, Milosavljevic A, Nelson T, Niehaus A, Weaver MA, Ramos EM, Williams MS. Providing Access to Genomic Variant Knowledge in a Healthcare Setting: A Vision for the ClinGen Electronic Health Records Workgroup. Clin Pharmacol Ther. 2016 Feb; 99(2):157-60. PMID: 26418054.
      View in: PubMed
    33. Vogel S, Rackwitz J, Schürman R, Prinz J, Milosavljevic AR, Réfrégiers M, Giuliani A, Bald I. Using DNA origami nanostructures to determine absolute cross sections for UV photon-induced DNA strand breakage. J Phys Chem Lett. 2015 Nov 19; 6(22):4589-93. PMID: 26536162.
      View in: PubMed
    34. Canon F, Milosavljevic AR, Nahon L, Giuliani A. Action spectroscopy of a protonated peptide in the ultraviolet range. Phys Chem Chem Phys. 2015 Oct 21; 17(39):25725-33. PMID: 25586594.
      View in: PubMed
    35. Subramanian SL, Kitchen RR, Alexander R, Carter BS, Cheung KH, Laurent LC, Pico A, Roberts LR, Roth ME, Rozowsky JS, Su AI, Gerstein MB, Milosavljevic A. Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies. J Extracell Vesicles. 2015; 4:27497. PMID: 26320941.
      View in: PubMed
    36. Pajovic JD, Dojcilovic R, Božanic DK, Kašcáková S, Réfrégiers M, Dimitrijevic-Brankovic S, Vodnik VV, Milosavljevic AR, Piscopiello E, Luyt AS, Djokovic V. Tryptophan-functionalized gold nanoparticles for deep UV imaging of microbial cells. Colloids Surf B Biointerfaces. 2015 Nov 01; 135:742-50. PMID: 26340364.
      View in: PubMed
    37. Kannan K, Coarfa C, Chao PW, Luo L, Wang Y, Brinegar AE, Hawkins SM, Milosavljevic A, Matzuk MM, Yen L. Recurrent BCAM-AKT2 fusion gene leads to a constitutively activated AKT2 fusion kinase in high-grade serous ovarian carcinoma. Proc Natl Acad Sci U S A. 2015 Mar 17; 112(11):E1272-7. PMID: 25733895.
      View in: PubMed
    38. Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M. Integrative analysis of 111 reference human epigenomes. Nature. 2015 Feb 19; 518(7539):317-30. PMID: 25693563.
      View in: PubMed
    39. Amin V, Harris RA, Onuchic V, Jackson AR, Charnecki T, Paithankar S, Lakshmi Subramanian S, Riehle K, Coarfa C, Milosavljevic A. Epigenomic footprints across 111 reference epigenomes reveal tissue-specific epigenetic regulation of lincRNAs. Nat Commun. 2015 Feb 18; 6:6370. PMID: 25691256.
      View in: PubMed
    40. Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, Mill J, Farnham PJ, Kellis M, Marra MA, Milosavljevic A, Hirst M, Stormo GD, Wang T, Costello JF. Intermediate DNA methylation is a conserved signature of genome regulation. Nat Commun. 2015 Feb 18; 6:6363. PMID: 25691127.
      View in: PubMed
    41. Coarfa C, Pichot C, Jackson A, Tandon A, Amin V, Raghuraman S, Paithankar S, Lee AV, McGuire SE, Milosavljevic A. Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools. BMC Bioinformatics. 2014; 15 Suppl 7:S2. PMID: 25080362.
      View in: PubMed
    42. Milosavljevic AR, Cerovski VZ, Canon F, Rankovic MLj, Škoro N, Nahon L, Giuliani A. Energy-Dependent UV Photodissociation of Gas-Phase Adenosine Monophosphate Nucleotide Ions: The Role of a Single Solvent Molecule. J Phys Chem Lett. 2014 Jun 05; 5(11):1994-9. PMID: 26273885.
      View in: PubMed
    43. Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K. mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities. BMC Genomics. 2014 Apr 03; 15:257. PMID: 24694284.
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    44. Kannan K, Coarfa C, Rajapakshe K, Hawkins SM, Matzuk MM, Milosavljevic A, Yen L. CDKN2D-WDFY2 is a cancer-specific fusion gene recurrent in high-grade serous ovarian carcinoma. PLoS Genet. 2014 Mar; 10(3):e1004216. PMID: 24675677.
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    45. Kunde-Ramamoorthy G, Coarfa C, Laritsky E, Kessler NJ, Harris RA, Xu M, Chen R, Shen L, Milosavljevic A, Waterland RA. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing. Nucleic Acids Res. 2014 Apr; 42(6):e43. PMID: 24391148.
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    46. Giuliani A, Milosavljevic AR, Canon F, Nahon L. Contribution of synchrotron radiation to photoactivation studies of biomolecular ions in the gas phase. Mass Spectrom Rev. 2014 Nov-Dec; 33(6):424-41. PMID: 24375654.
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    47. Michels KB, Binder AM, Dedeurwaerder S, Epstein CB, Greally JM, Gut I, Houseman EA, Izzi B, Kelsey KT, Meissner A, Milosavljevic A, Siegmund KD, Bock C, Irizarry RA. Recommendations for the design and analysis of epigenome-wide association studies. Nat Methods. 2013 Oct; 10(10):949-55. PMID: 24076989.
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    48. Dittwald P, Gambin T, Szafranski P, Li J, Amato S, Divon MY, Rodríguez Rojas LX, Elton LE, Scott DA, Schaaf CP, Torres-Martinez W, Stevens AK, Rosenfeld JA, Agadi S, Francis D, Kang SH, Breman A, Lalani SR, Bacino CA, Bi W, Milosavljevic A, Beaudet AL, Patel A, Shaw CA, Lupski JR, Gambin A, Cheung SW, Stankiewicz P. NAHR-mediated copy-number variants in a clinical population: mechanistic insights into both genomic disorders and Mendelizing traits. Genome Res. 2013 Sep; 23(9):1395-409. PMID: 23657883.
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    49. Wu CC, Kannan K, Lin S, Yen L, Milosavljevic A. Identification of cancer fusion drivers using network fusion centrality. Bioinformatics. 2013 May 01; 29(9):1174-81. PMID: 23505294.
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    50. Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A. Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability. PLoS Genet. 2013; 9(2):e1003333. PMID: 23468659.
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    51. Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F. Atlas2 Cloud: a framework for personal genome analysis in the cloud. BMC Genomics. 2012; 13 Suppl 6:S19. PMID: 23134663.
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    52. Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Spark: a navigational paradigm for genomic data exploration. Genome Res. 2012 Nov; 22(11):2262-9. PMID: 22960372.
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    53. Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 2012 Sep; 22(9):1813-31. PMID: 22955991.
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    54. Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A. The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. BMC Bioinformatics. 2012; 13 Suppl 13:S11. PMID: 23320832.
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    55. Davies MN, Volta M, Pidsley R, Lunnon K, Dixit A, Lovestone S, Coarfa C, Harris RA, Milosavljevic A, Troakes C, Al-Sarraj S, Dobson R, Schalkwyk LC, Mill J. Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood. Genome Biol. 2012 Jun 15; 13(6):R43. PMID: 22703893.
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    56. Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J. A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy. PLoS One. 2012; 7(6):e36466. PMID: 22719832.
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    57. Li J, Harris RA, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Shaw C, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A. Genomic hypomethylation in the human germline associates with selective structural mutability in the human genome. PLoS Genet. 2012; 8(5):e1002692. PMID: 22615578.
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    98. Milosavljevic A. The economic value of bioinformation. Bioinformatics. 2000 Jul; 16(7):571-2. PMID: 11038327.
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    99. Paunesku T, Chang-Liu CM, Shearin-Jones P, Watson C, Milton J, Oryhon J, Salbego D, Milosavljevic A, Woloschak GE. Identification of genes regulated by UV/salicylic acid. Int J Radiat Biol. 2000 Feb; 76(2):189-98. PMID: 10716640.
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    100. Milosavljevic A, Savkovic S, Crkvenjakov R, Salbego D, Serrato H, Kreuzer H, Gemmell A, Batus S, Grujic D, Carnahan S, Paunesku T, Tepavcevic J. DNA sequence recognition by hybridization to short oligomers: experimental verification of the method on the E. coli genome. Genomics. 1996 Oct 01; 37(1):77-86. PMID: 8921373.
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    101. Milosavljevic A, Zeremski M, Strezoska Z, Grujic D, Dyanov H, Batus S, Salbego D, Paunesku T, Soares MB, Crkvenjakov R. Discovering distinct genes represented in 29,570 clones from infant brain cDNA libraries by applying sequencing by hybridization methodology. Genome Res. 1996 Feb; 6(2):132-41. PMID: 8919692.
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    102. Milosavljevic A, Savkovic S, Crkvenjakov R, Salbego D, Serrato H, Kreuzer H, Gemmell A, Batus S, Grujic D, Carnahan S, Tepavcevic J. Genome-scale DNA sequence recognition by hybridization to short oligomers. Proc Int Conf Intell Syst Mol Biol. 1996; 4:176-81. PMID: 8877517.
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    103. Milosavljevic A, Strezoska Z, Zeremski M, Grujic D, Paunesku T, Crkvenjakov R. Clone clustering by hybridization. Genomics. 1995 May 01; 27(1):83-9. PMID: 7665186.
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    104. Milosavljevic A. DNA sequence recognition by hybridization to short oligomers. J Comput Biol. 1995; 2(2):355-70. PMID: 7497133.
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    105. Milosavljevic A. Sequence comparisons via algorithmic mutual information. Proc Int Conf Intell Syst Mol Biol. 1994; 2:303-9. PMID: 7584405.
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    106. Milosavljevic A, Jurka J. Discovering simple DNA sequences by the algorithmic significance method. Comput Appl Biosci. 1993 Aug; 9(4):407-11. PMID: 8402207.
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    107. Jurka J, Kaplan DJ, Duncan CH, Walichiewicz J, Milosavljevic A, Murali G, Solus JF. Identification and characterization of new human medium reiteration frequency repeats. Nucleic Acids Res. 1993 Mar 11; 21(5):1273-9. PMID: 8464711.
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    108. Milosavljevic A. Discovering sequence similarity by the algorithmic significance method. Proc Int Conf Intell Syst Mol Biol. 1993; 1:284-91. PMID: 7584347.
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    109. Jurka J, Walichiewicz J, Milosavljevic A. Prototypic sequences for human repetitive DNA. J Mol Evol. 1992 Oct; 35(4):286-91. PMID: 1404414.
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