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OSCAR RUIZ

TitleAssistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
AddressOne Baylor Plaza
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Busschers E, Chen-Everson Y, Adeyeye M, Song I, Busse E, Castellon A, Ruiz O, Meyers N, Bae Y, Ambrose C, Lee B, Busschers E, Chen-Everson Y, Adeyeye M, Song IW, Busse E, Castellon A, Ruiz O, Meyers N, Bae Y, Ambrose C, Lee B. Anti-transforming growth factor-? treatment shows increased bone mass and strength in a novel mouse model for osteogenesis imperfecta type I. J Bone Miner Res. 2025 Jun 25; 40(7):881-890. PMID: 40358008; PMCID: PMC12188749.
      Citations:    Fields:    Translation:AnimalsCells
    2. Ruiz OE, Wagenaar JB, Mehta B, Ziogas I, Swanson L, Worley KC, Cruz-Almeida Y, Johnson AJ, Boline J, Boccanfuso J, RE-JOIN Consortium, Martone ME, Haelterman NA. A guide to developing harmonized research workflows in a team science context. Exp Neurol. 2025 Oct; 392:115333. PMID: 40482901; PMCID: PMC12233188.
      Citations:    Fields:    Translation:Humans
    3. Pombo MA, Rosli HG, Maiale S, Elliott C, Stieben ME, Romero FM, Garriz A, Ruiz OA, Idnurm A, Rossi FR. Unveiling the virulence mechanism of Leptosphaeria maculans in the Brassica napus interaction: the key role of sirodesmin PL in the induction of cell death. J Exp Bot. 2025 Apr 09; 76(6):1767-1783. PMID: 39680058.
      Citations:    Fields:    Translation:AnimalsCells
    4. Chen YT, Jiang MM, Leynes C, Adeyeye M, Majano CF, Ibrahim B, Polak U, Hung G, Jin Z, Lanza DG, Liao L, Dawson B, Chen-Evenson Y, Ruiz OE, Gibbons RJ, Heaney JD, Bae Y, Lee B. ATRX silences Cartpt expression in osteoblastic cells during skeletal development. J Clin Invest. 2025 Jan 02; 135(1). PMID: 39744954; PMCID: PMC11684799.
      Citations: 2     Fields:    Translation:AnimalsCells
    5. Gillespie W, Zhang Y, Ruiz OE, Cerda J, Ortiz-Guzman J, Turner WD, Largoza G, Sherman M, Mosser LE, Fujimoto E, Chien CB, Kwan KM, Arenkiel BR, Devine WP, Wythe JD. Multisite Assembly of Gateway Induced Clones (MAGIC): a flexible cloning toolbox with diverse applications in vertebrate model systems. bioRxiv. 2024 Jul 13. PMID: 39026881; PMCID: PMC11257631.
      Citations:    
    6. Avico EH, Acevedo RM, Duarte MJ, Rodrigues Salvador A, Nunes-Nesi A, Ruiz OA, Sansberro PA. Integrating Transcriptional, Metabolic, and Physiological Responses to Drought Stress in Ilex paraguariensis Roots. Plants (Basel). 2023 Jun 21; 12(13). PMID: 37446965; PMCID: PMC10346965.
      Citations:    
    7. Monteoliva MI, Ruiz OA, Li F. Editorial: Legumes and their microbiome in climate change mitigation. Front Plant Sci. 2023; 14:1220535. PMID: 37377800; PMCID: PMC10291733.
      Citations:    
    8. Maili L, Ruiz OE, Kahan PH, Chiu F, Larson ST, Hashmi SS, Hecht JT, Eisenhoffer GT. Facial analytics based on a coordinate extrapolation system (zFACE) for morphometric phenotyping of developing zebrafish. Dis Model Mech. 2023 06 01; 16(6). PMID: 37102214; PMCID: PMC10245138.
      Citations:    
    9. Yu Y, Alvarado R, Petty LE, Bohlender RJ, Shaw DM, Below JE, Bejar N, Ruiz OE, Tandon B, Eisenhoffer GT, Kiss DL, Huff CD, Letra A, Hecht JT. Polygenic risk impacts PDGFRA mutation penetrance in non-syndromic cleft lip and palate. Hum Mol Genet. 2022 07 21; 31(14):2348-2357. PMID: 35147171; PMCID: PMC9307317.
      Citations: 1     Fields:    Translation:Animals
    10. Ruiz OE, Samms KM, Eisenhoffer GT. A protocol to evaluate epithelial regeneration after inducing cell loss in zebrafish larvae. STAR Protoc. 2022 03 18; 3(1):101073. PMID: 35036954; PMCID: PMC8749296.
      Citations:    
    11. Wurster S, Ruiz OE, Tatara AM, Kontoyiannis DP, Eisenhoffer GT. Protocol for fungal infection following the induction of epithelial cell loss in larval zebrafish. STAR Protoc. 2021 12 17; 2(4):100963. PMID: 34849488; PMCID: PMC8609045.
      Citations:    Fields:    Translation:AnimalsCells
    12. Nieva AS, Romero FM, Erban A, Carrasco P, Ruiz OA, Kopka J. Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. J Fungi (Basel). 2021 Sep 16; 7(9). PMID: 34575803; PMCID: PMC8468338.
      Citations:    
    13. Atieh Y, Ruiz OE, Eisenhoffer GT. Protocol for quantitative analysis of pulsatile contractions and cell extrusion in epithelial tissues of larval zebrafish. STAR Protoc. 2021 06 18; 2(2):100600. PMID: 34169293; PMCID: PMC8209694.
      Citations:    
    14. Wurster S, Ruiz OE, Samms KM, Tatara AM, Albert ND, Kahan PH, Nguyen AT, Mikos AG, Kontoyiannis DP, Eisenhoffer GT. EGF-mediated suppression of cell extrusion during mucosal damage attenuates opportunistic fungal invasion. Cell Rep. 2021 03 23; 34(12):108896. PMID: 33761358; PMCID: PMC8842569.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    15. Bejerman N, Acevedo RM, de Breuil S, Ruiz OA, Sansberro P, Dietzgen RG, Nome C, Debat H. Molecular characterization of a novel cytorhabdovirus with a unique genomic organization infecting yerba mate (Ilex paraguariensis) in Argentina. Arch Virol. 2020 Jun; 165(6):1475-1479. PMID: 32246285.
      Citations:    
    16. Nieva AS, Vilas JM, G?rriz A, Maiale SJ, Men?ndez AB, Erban A, Kopka J, Ruiz OA. The fungal endophyte Fusarium solani provokes differential effects on the fitness of two Lotus species. Plant Physiol Biochem. 2019 Nov; 144:100-109. PMID: 31561198.
      Citations:    
    17. Escaray FJ, Antonelli CJ, Copello GJ, Puig S, Pe?arrubia L, Ruiz OA, Perea-Garc?a A. Characterization of the Copper Transporters from Lotus spp. and Their Involvement under Flooding Conditions. Int J Mol Sci. 2019 Jun 27; 20(13). PMID: 31252630; PMCID: PMC6651048.
      Citations:    
    18. Cantu Gutierrez A, Cantu Gutierrez M, Rhyner AM, Ruiz OE, Eisenhoffer GT, Wythe JD. FishNET: An automated relational database for zebrafish colony management. PLoS Biol. 2019 06; 17(6):e3000343. PMID: 31220074; PMCID: PMC6605666.
      Citations: 1     Fields:    Translation:Animals
    19. Brock CK, Wallin ST, Ruiz OE, Samms KM, Mandal A, Sumner EA, Eisenhoffer GT. Stem cell proliferation is induced by apoptotic bodies from dying cells during epithelial tissue maintenance. Nat Commun. 2019 03 05; 10(1):1044. PMID: 30837472; PMCID: PMC6400930.
      Citations:    
    20. Fish JE, Cantu Gutierrez M, Dang LT, Khyzha N, Chen Z, Veitch S, Cheng HS, Khor M, Antounians L, Boudreau E, Herman AM, Rhyner AM, Ruiz OE, Eisenhoffer GT, Medina-Rivera A, Wilson MD, Wythe JD, Njock MS. Dynamic regulation of VEGF-inducible genes by an ERK/ERG/p300 transcriptional network. Development. 2017 07 01; 144(13):2428-2444. PMID: 28536097; PMCID: PMC5536864.
      Citations: 33     Fields:    Translation:HumansAnimalsCells
    21. Grady SL, Malfatti SA, Gunasekera TS, Dalley BK, Lyman MG, Striebich RC, Mayhew MB, Zhou CL, Ruiz ON, Dugan LC. A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes. BMC Genomics. 2017 04 28; 18(1):334. PMID: 28454561; PMCID: PMC5410065.
      Citations:    
    22. Eisenhoffer GT, Slattum G, Ruiz OE, Otsuna H, Bryan CD, Lopez J, Wagner DS, Bonkowsky JL, Chien CB, Dorsky RI, Rosenblatt J. A toolbox to study epidermal cell types in zebrafish. J Cell Sci. 2017 01 01; 130(1):269-277. PMID: 27149923; PMCID: PMC5394773.
      Citations: 17     Fields:    Translation:AnimalsCells
    23. Babuin MF, Campestre MP, Rocco R, Bordenave CD, Escaray FJ, Antonelli C, Calzadilla P, G?rriz A, Serna E, Carrasco P, Ruiz OA, Menendez AB. Response to long-term NaHCO3-derived alkalinity in model Lotus japonicus Ecotypes Gifu B-129 and Miyakojima MG-20: transcriptomic profiling and physiological characterization. PLoS One. 2014; 9(5):e97106. PMID: 24835559; PMCID: PMC4024010.
      Citations:    
    24. Jim?nez-Bremont JF, Marina M, Guerrero-Gonz?lez Mde L, Rossi FR, S?nchez-Rangel D, Rodr?guez-Kessler M, Ruiz OA, G?rriz A. Physiological and molecular implications of plant polyamine metabolism during biotic interactions. Front Plant Sci. 2014; 5:95. PMID: 24672533; PMCID: PMC3957736.
      Citations:    
    25. Ruiz OE, Nikolova LS, Metzstein MM. Drosophila Zpr1 (Zinc finger protein 1) is required downstream of both EGFR and FGFR signaling in tracheal subcellular lumen formation. PLoS One. 2012; 7(9):e45649. PMID: 23029159; PMCID: PMC3445489.
      Citations:    
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