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EREZ LIEBERMAN AIDEN

TitleProfessor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular & Human Genetics
AddressOne Baylor Plaza, 231e
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Gschwind AR, Mualim KS, Karbalayghareh A, Sheth MU, Dey KK, Jagoda E, Nurtdinov RN, Xi W, Tan AS, Jones H, Ma XR, Yao D, Nasser J, Avsec ?, James BT, Shamim MS, Durand NC, Rao SSP, Mahajan R, Doughty BR, Andreeva K, Ulirsch JC, Fan K, Perez EM, Nguyen TC, Kelley DR, Finucane HK, Moore JE, Weng Z, Kellis M, Bassik MC, Price AL, Beer MA, Guig? R, Stamatoyannopoulos JA, Lieberman Aiden E, Greenleaf WJ, Leslie CS, Steinmetz LM, Kundaje A, Engreitz JM. An encyclopedia of enhancer-gene regulatory interactions in the human genome. bioRxiv. 2023 Nov 13. PMID: 38014075; PMCID: PMC10680627.
      Citations:    
    2. Robledo-Ruiz DA, Gan HM, Kaur P, Dudchenko O, Weisz D, Khan R, Lieberman Aiden E, Osipova E, Hiller M, Magrath MJL, Clarke RH, Sunnucks P, Pavlova A, Morales HE. Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater. Gigascience. 2022 03 29; 11. PMID: 35348671; PMCID: PMC8963300.
      Citations:    Fields:    Translation:AnimalsCells
    3. Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Chaw SM, Chen L, Childers AK, Coddington JA, Conde DA, Corominas M, Crandall KA, DiPalma F, Durbin R, Ebenezer TE, Edwards SV, Fedrigo O, Flicek P, Formenti G, Gibbs RA, Gilbert MTP, Goldstein MM, Graves JM, Greely HT, Grigoriev IV, Hackett KJ, Hall N, Haussler D, Helgen KM, Hogg CJ, Isobe S, Jakobsen KS, Janke A, Jarvis ED, Johnson WE, Jones SJM, Karlsson EK, Kersey PJ, Kim JH, Kress WJ, Kuraku S, Lawniczak MKN, Leebens-Mack JH, Li X, Lindblad-Toh K, Liu X, Lopez JV, Marques-Bonet T, Mazard S, Mazet JAK, Mazzoni CJ, Myers EW, O'Neill RJ, Paez S, Park H, Robinson GE, Ryder OA, Sabir JSM, Shaffer HB, Shank TM, Sherkow JS, Soltis PS, Tang B, Tedersoo L, Uliano-Silva M, Wang K, Wei X, Wetzer R, Wilson JL, Xu X, Yang H, Yoder AD, Zhang G, B?lint M, Castilla-Rubio JC, Crawford AJ, Roquet C. The Earth BioGenome Project 2020: Starting the clock. Proc Natl Acad Sci U S A. 2022 01 25; 119(4). PMID: 35042800; PMCID: PMC8795548.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    4. Gavrilov AA, Sultanov RI, Magnitov MD, Galitsyna AA, Dashinimaev EB, Lieberman Aiden E, Razin SV. RedChIP identifies noncoding RNAs associated with genomic sites occupied by Polycomb and CTCF proteins. Proc Natl Acad Sci U S A. 2022 01 04; 119(1). PMID: 34969862; PMCID: PMC8742611.
      Citations:    
    5. Houlard M, Cutts EE, Shamim MS, Godwin J, Weisz D, Presser Aiden A, Lieberman Aiden E, Schermelleh L, Vannini A, Nasmyth K. MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface. Elife. 2021 12 01; 10. PMID: 34850681; PMCID: PMC8673838.
      Citations:    
    6. Van Dam MH, Cabras AA, Henderson JB, Rominger AJ, Omer AD, Dudchenko O, Lieberman Aiden E, Lam AW, P?rez Estrada C. The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution. PLoS Genet. 2021 08; 17(8):e1009745. PMID: 34460814; PMCID: PMC8432895.
      Citations: 1     Fields:    Translation:AnimalsCells
    7. Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei PJ, Kornberg RD, Warren WC, Cary G, Hinman V, Lindblad-Toh K, Di Palma F, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, van Steensel B, de Wit E, Di Pierro M, Lieberman Aiden E, Rowland BD, Sede?o Cacciatore ?, Contessoto VG, G?mez-Skarmeta JL, Medema RH, Onuchic JN. 3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science. 2021 05 28; 372(6545):984-989. PMID: 34045355; PMCID: PMC8172041.
      Citations: 22     Fields:    Translation:HumansAnimalsCells
    8. Sanborn AL, Yeh BT, Feigerle JT, Hao CV, Townshend RJ, Lieberman Aiden E, Dror RO, Kornberg RD. Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator. Elife. 2021 04 27; 10. PMID: 33904398; PMCID: PMC8137143.
      Citations:    
    9. Kaur P, Lui C, Dudchenko O, Nandety RS, Hurgobin B, Pham M, Lieberman Aiden E, Wen J, Mysore K. Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly. Int J Mol Sci. 2021 Apr 21; 22(9). PMID: 33919286; PMCID: PMC8122578.
      Citations: 3     Fields:    Translation:AnimalsCells
    10. Kaushal A, Mohana G, Dorier J, ?zdemir I, Omer A, Cousin P, Semenova A, Taschner M, Dergai O, Marzetta F, Iseli C, Eliaz Y, Weisz D, Shamim MS, Guex N, Lieberman Aiden E, Gambetta MC. CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions. Nat Commun. 2021 02 12; 12(1):1011. PMID: 33579945; PMCID: PMC7880997.
      Citations:    
    11. Cai Y, Zhang Y, Loh YP, Tng JQ, Lim MC, Cao Z, Raju A, Lieberman Aiden E, Li S, Manikandan L, Tergaonkar V, Tucker-Kellogg G, Fullwood MJ. H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions. Nat Commun. 2021 01 29; 12(1):719. PMID: 33514712; PMCID: PMC7846766.
      Citations:    
    12. Forth KE, Wirfel KL, Adams SD, Rianon NJ, Lieberman Aiden E, Madansingh SI. A Postural Assessment Utilizing Machine Learning Prospectively Identifies Older Adults at a High Risk of Falling. Front Med (Lausanne). 2020; 7:591517. PMID: 33392218; PMCID: PMC7772994.
      Citations:    
    13. Cheng RR, Contessoto VG, Lieberman Aiden E, Wolynes PG, Di Pierro M, Onuchic JN. Exploring chromosomal structural heterogeneity across multiple cell lines. Elife. 2020 10 13; 9. PMID: 33047670; PMCID: PMC7593087.
      Citations:    
    14. Oluwadare O, Highsmith M, Turner D, Lieberman Aiden E, Cheng J. Correction to: GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data. BMC Mol Cell Biol. 2020 08 18; 21(1):62. PMID: 32811439; PMCID: PMC7436965.
      Citations:    
    15. Oluwadare O, Highsmith M, Turner D, Lieberman Aiden E, Cheng J. GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data. BMC Mol Cell Biol. 2020 Aug 05; 21(1):60. PMID: 32758136; PMCID: PMC7405446.
      Citations:    
    16. Sandoval-Velasco M, Rodr?guez JA, Perez Estrada C, Zhang G, Lieberman Aiden E, Marti-Renom MA, Gilbert MTP, Smith O. Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform. Gigascience. 2020 08 01; 9(8). PMID: 32845983; PMCID: PMC7448675.
      Citations:    
    17. Humble E, Dobrynin P, Senn H, Chuven J, Scott AF, Mohr DW, Dudchenko O, Omer AD, Colaric Z, Lieberman Aiden E, Al Dhaheri SS, Wildt D, Oliaji S, Tamazian G, Pukazhenthi B, Ogden R, Koepfli KP. Chromosomal-level genome assembly of the scimitar-horned oryx: Insights into diversity and demography of a species extinct in the wild. Mol Ecol Resour. 2020 Nov; 20(6):1668-1681. PMID: 32365406; PMCID: PMC10332132.
      Citations: 9     Fields:    Translation:AnimalsCells
    18. Rowley MJ, Poulet A, Nichols MH, Bixler BJ, Sanborn AL, Brouhard EA, Hermetz K, Linsenbaum H, Csankovszki G, Lieberman Aiden E, Corces VG. Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals. Genome Res. 2020 03; 30(3):447-458. PMID: 32127418; PMCID: PMC7111518.
      Citations:    
    19. Mead D, Hailer F, Chadwick E, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan JD, Dudchenko O, Omer A, Weisz D, Lieberman Aiden E, McCarthy S, Howe K, Sims Y, Torrance J, Tracey A, Challis R, Durbin R, Blaxter M. The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758. Wellcome Open Res. 2020; 5:33. PMID: 32258427; PMCID: PMC7097881.
      Citations: 1     
    20. Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Sims Y, Torrance J, Tracey A, Howe K, Challis R, Durbin R, Blaxter M. The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758. Wellcome Open Res. 2020; 5:18. PMID: 32587897; PMCID: PMC7309416.
      Citations: 3     
    21. Goundaroulis D, Lieberman Aiden E, Stasiak A. Chromatin Is Frequently Unknotted at the Megabase Scale. Biophys J. 2020 05 05; 118(9):2268-2279. PMID: 31818464; PMCID: PMC7202934.
      Citations:    
    22. Zhang Y, Zhang X, Ba Z, Liang Z, Dring EW, Hu H, Lou J, Kyritsis N, Zurita J, Shamim MS, Presser Aiden A, Lieberman Aiden E, Alt FW. The fundamental role of chromatin loop extrusion in physiological V(D)J recombination. Nature. 2019 09; 573(7775):600-604. PMID: 31511698; PMCID: PMC6867615.
      Citations:    
    23. Lee DP, Tan WLW, Anene-Nzelu CG, Lee CJM, Li PY, Luu TDA, Chan CX, Tiang Z, Ng SL, Huang X, Efthymios M, Autio MI, Jiang J, Fullwood MJ, Prabhakar S, Lieberman Aiden E, Foo RS. Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress-Gene Response. Circulation. 2019 04 16; 139(16):1937-1956. PMID: 30717603.
      Citations:    
    24. Lieberman Aiden E. Untangling the Genome. Sci Am. 2019 03 01; 320(3):50. PMID: 39010373.
      Citations:    
    25. Di Pierro M, Cheng RR, Lieberman Aiden E, Wolynes PG, Onuchic JN. De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture. Proc Natl Acad Sci U S A. 2017 11 14; 114(46):12126-12131. PMID: 29087948; PMCID: PMC5699090.
      Citations:    
    26. . High-resolution antibody dynamics of vaccine-induced immune responses. PNAS. 2014; 13(111):4928-33.
    27. . Uncharted: Big Data as a lens on Human Culture. 2013; 288.
    28. Dekker J, Wysocka J, Mattaj I, Lieberman Aiden E, Pikaard C. Nuclear biology: what's been most surprising? Cell. 2013 Mar 14; 152(6):1207-8. PMID: 23616995; PMCID: PMC4149748.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    29. Shendure J, Lieberman Aiden E. The expanding scope of DNA sequencing. Nat Biotechnol. 2012 Nov; 30(11):1084-94. PMID: 23138308; PMCID: PMC4149750.
      Citations: 107     Fields:    
    30. Lieberman Aiden E. GE Prize essay. Zoom! Science. 2011 Dec 02; 334(6060):1222-3. PMID: 22144611.
      Citations:    Fields:    Translation:HumansCells
    31. Michel JB, Shen YK, Aiden AP, Veres A, Gray MK, Google Books Team, Pickett JP, Hoiberg D, Clancy D, Norvig P, Orwant J, Pinker S, Nowak MA, Aiden EL. Quantitative analysis of culture using millions of digitized books. Science. 2011 Jan 14; 331(6014):176-82. PMID: 21163965; PMCID: PMC3279742.
      Citations: 221     Fields:    Translation:Humans
    32. van Berkum NL, Lieberman-Aiden E, Williams L, Imakaev M, Gnirke A, Mirny LA, Dekker J, Lander ES. Hi-C: a method to study the three-dimensional architecture of genomes. J Vis Exp. 2010 May 06; (39). PMID: 20461051; PMCID: PMC3149993.
      Citations: 168     Fields:    Translation:Cells
    33. Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009 Oct 09; 326(5950):289-93. PMID: 19815776; PMCID: PMC2858594.
      Citations: 3082     Fields:    Translation:HumansCells
    34. Lieberman E, Michel JB, Jackson J, Tang T, Nowak MA. Quantifying the evolutionary dynamics of language. Nature. 2007 Oct 11; 449(7163):713-6. PMID: 17928859; PMCID: PMC2460562.
      Citations: 52     Fields:    
    35. Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature. 2007 Aug 02; 448(7153):553-60. PMID: 17603471; PMCID: PMC2921165.
      Citations: 2155     Fields:    Translation:AnimalsCells
    36. Ohtsuki H, Hauert C, Lieberman E, Nowak MA. A simple rule for the evolution of cooperation on graphs and social networks. Nature. 2006 May 25; 441(7092):502-5. PMID: 16724065; PMCID: PMC2430087.
      Citations: 345     Fields:    Translation:HumansAnimals
    37. Lieberman E, Hauert C, Nowak MA. Evolutionary dynamics on graphs. Nature. 2005 Jan 20; 433(7023):312-6. PMID: 15662424.
      Citations: 205     Fields:    
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