TitleAdjunct Associate Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Pediatrics
Houston, TX 77030
vCardDownload vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Gan L, Vinci G, Allen GI. Correlation Imputation for Single-Cell RNA-seq. J Comput Biol. 2022 05; 29(5):465-482. PMID: 35325552.
      Citations:    Fields:    
    2. Lusk SJ, McKinney A, Hunt PJ, Fahey PG, Patel J, Chang A, Sun JJ, Martinez VK, Zhu PJ, Egbert JR, Allen G, Jiang X, Arenkiel BR, Tolias AS, Costa-Mattioli M, Ray RS. A CRISPR toolbox for generating intersectional genetic mouse models for functional, molecular, and anatomical circuit mapping. BMC Biol. 2022 01 28; 20(1):28. PMID: 35086530.
      Citations: 1     Fields:    Translation:AnimalsCells
    3. Tan X, Dai Y, Humayun AI, Chen H, Allen GI, Jain PN. Detection of Junctional Ectopic Tachycardia by Central Venous Pressure. Artif Intell Med Conf Artif Intell Med (2005-). 2021 Jun; 12721:258-262. PMID: 34278383.
    4. Onur TS, Laitman A, Zhao H, Keyho R, Kim H, Wang J, Mair M, Wang H, Li L, Perez A, de Haro M, Wan YW, Allen G, Lu B, Al-Ramahi I, Liu Z, Botas J. Downregulation of glial genes involved in synaptic function mitigates Huntington's disease pathogenesis. Elife. 2021 04 19; 10. PMID: 33871358.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    5. Toghani MT, Allen GI. MP-Boost: Minipatch Boosting via Adaptive Feature and Observation Sampling. Int Conf Big Data Smart Comput. 2021 Jan; 2021. PMID: 34734115.
    6. Yao T, LeJeune D, Javadi H, Baraniuk RG, Allen GI. Minipatch Learning as Implicit Ridge-Like Regularization. Int Conf Big Data Smart Comput. 2021 Jan; 2021. PMID: 34746376.
    7. Wang M, Allen GI. Integrative Generalized Convex Clustering Optimization and Feature Selection for Mixed Multi-View Data. J Mach Learn Res. 2021 Jan; 22. PMID: 34744522.
    8. Yao T, Sweeney E, Nagorski J, Shulman JM, Allen GI. Quantifying cognitive resilience in Alzheimer's Disease: The Alzheimer's Disease Cognitive Resilience Score. PLoS One. 2020; 15(11):e0241707. PMID: 33152028.
      Citations: 5     Fields:    Translation:Humans
    9. Gan L, Vinci G, Allen GI. Correlation Imputation in Single cell RNA-seq using Auxiliary Information and Ensemble Learning. ACM BCB. 2020 Sep; 2020. PMID: 34278382.
    10. Weylandt M, Nagorski J, Allen GI. Dynamic Visualization and Fast Computation for Convex Clustering via Algorithmic Regularization. J Comput Graph Stat. 2020; 29(1):87-96. PMID: 32982130.
      Citations: 3     
    11. Zhang Z, Allen GI, Zhu H, Dunson D. Tensor network factorizations: Relationships between brain structural connectomes and traits. Neuroimage. 2019 08 15; 197:330-343. PMID: 31029870.
      Citations: 10     Fields:    Translation:Humans
    12. Nagorski J, Allen GI. Genomic region detection via Spatial Convex Clustering. PLoS One. 2018; 13(9):e0203007. PMID: 30204756.
      Citations: 1     Fields:    Translation:HumansCells
    13. Yi H, Raman AT, Zhang H, Allen GI, Liu Z. Detecting hidden batch factors through data-adaptive adjustment for biological effects. Bioinformatics. 2018 04 01; 34(7):1141-1147. PMID: 29617963.
      Citations: 6     Fields:    Translation:Humans
    14. Zhao Z, Liu Z, Chen K, Guo Y, Allen GI, Zhang J, Jim Zheng W, Ruan J. The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics. BMC Genomics. 2017 Oct 03; 18(Suppl 6):703. PMID: 28984207.
      Citations: 4     Fields:    
    15. Liu Z, Zheng WJ, Allen GI, Liu Y, Ruan J, Zhao Z. The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools. BMC Bioinformatics. 2017 Oct 03; 18(Suppl 11):405. PMID: 28984189.
      Citations: 1     Fields:    Translation:HumansCells
    16. Wan YW, Allen GI, Baker Y, Yang E, Ravikumar P, Anderson M, Liu Z. XMRF: an R package to fit Markov Networks to high-throughput genetics data. BMC Syst Biol. 2016 08 26; 10 Suppl 3:69. PMID: 27586041.
      Citations: 7     Fields:    
    17. Chi EC, Allen GI, Baraniuk RG. Convex biclustering. Biometrics. 2017 03; 73(1):10-19. PMID: 27163413.
      Citations: 15     Fields:    
    18. Narayan M, Allen GI. Mixed Effects Models for Resampled Network Statistics Improves Statistical Power to Find Differences in Multi-Subject Functional Connectivity. Front Neurosci. 2016; 10:108. PMID: 27147940.
      Citations: 7     
    19. Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme KL, Boutros PC, Caberlotto L, Caloian C, Campbell F, Chaibub Neto E, Chang YC, Chen B, Chen CY, Chien TY, Clark T, Das S, Davatzikos C, Deng J, Dillenberger D, Dobson RJ, Dong Q, Doshi J, Duma D, Errico R, Erus G, Everett E, Fardo DW, Friend SH, Fröhlich H, Gan J, St George-Hyslop P, Ghosh SS, Glaab E, Green RC, Guan Y, Hong MY, Huang C, Hwang J, Ibrahim J, Inglese P, Iyappan A, Jiang Q, Katsumata Y, Kauwe JS, Klein A, Kong D, Krause R, Lalonde E, Lauria M, Lee E, Lin X, Liu Z, Livingstone J, Logsdon BA, Lovestone S, Ma TW, Malhotra A, Mangravite LM, Maxwell TJ, Merrill E, Nagorski J, Namasivayam A, Narayan M, Naz M, Newhouse SJ, Norman TC, Nurtdinov RN, Oyang YJ, Pawitan Y, Peng S, Peters MA, Piccolo SR, Praveen P, Priami C, Sabelnykova VY, Senger P, Shen X, Simmons A, Sotiras A, Stolovitzky G, Tangaro S, Tateo A, Tung YA, Tustison NJ, Varol E, Vradenburg G, Weiner MW, Xiao G, Xie L, Xie Y, Xu J, Yang H, Zhan X, Zhou Y, Zhu F, Zhu H, Zhu S. Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimers Dement. 2016 06; 12(6):645-53. PMID: 27079753.
      Citations: 28     Fields:    Translation:Humans
    20. Yang E, Ravikumar P, Allen GI, Liu Z. Graphical Models via Univariate Exponential Family Distributions. J Mach Learn Res. 2015 Dec; 16:3813-3847. PMID: 27570498.
      Citations: 15     
    21. Wan YW, Allen GI, Liu Z. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. Bioinformatics. 2016 03 15; 32(6):952-4. PMID: 26568634.
      Citations: 55     Fields:    Translation:Humans
    22. Tomson SN, Schreiner MJ, Narayan M, Rosser T, Enrique N, Silva AJ, Allen GI, Bookheimer SY, Bearden CE. Resting state functional MRI reveals abnormal network connectivity in neurofibromatosis 1. Hum Brain Mapp. 2015 Nov; 36(11):4566-81. PMID: 26304096.
      Citations: 21     Fields:    Translation:Humans
    23. Hu Y, Allen GI. Local-aggregate modeling for big data via distributed optimization: Applications to neuroimaging. Biometrics. 2015 Dec; 71(4):905-17. PMID: 26295449.
      Citations: 1     Fields:    Translation:Humans
    24. Wan YW, Mach CM, Allen GI, Anderson ML, Liu Z. On the reproducibility of TCGA ovarian cancer microRNA profiles. PLoS One. 2014; 9(1):e87782. PMID: 24489963.
      Citations: 14     Fields:    Translation:HumansCells
    25. Chi EC, Allen GI, Zhou H, Kohannim O, Lange K, Thompson PM. IMAGING GENETICS VIA SPARSE CANONICAL CORRELATION ANALYSIS. Proc IEEE Int Symp Biomed Imaging. 2013 Dec 31; 2013:740-743. PMID: 24443689.
      Citations: 17     
    26. Zhang W, Wan YW, Allen GI, Pang K, Anderson ML, Liu Z. Molecular pathway identification using biological network-regularized logistic models. BMC Genomics. 2013; 14 Suppl 8:S7. PMID: 24564637.
      Citations: 27     Fields:    Translation:Humans
    27. Tomson SN, Narayan M, Allen GI, Eagleman DM. Neural networks of colored sequence synesthesia. J Neurosci. 2013 Aug 28; 33(35):14098-106. PMID: 23986245.
      Citations: 15     Fields:    Translation:Humans
    28. Allen GI, Liu Z. A Local Poisson Graphical Model for inferring networks from sequencing data. IEEE Trans Nanobioscience. 2013 Sep; 12(3):189-98. PMID: 23955777.
      Citations: 24     Fields:    Translation:Humans
    29. Allen GI, Peterson C, Vannucci M, Maletic-Savatic M. Regularized Partial Least Squares with an Application to NMR Spectroscopy. Stat Anal Data Min. 2013 Aug 01; 6(4):302-314. PMID: 24511361.
      Citations: 7     
    30. Allen GI, Tibshirani R. Inference with Transposable Data: Modeling the Effects of Row and Column Correlations. J R Stat Soc Series B Stat Methodol. 2012 Sep; 74(4):721-743. PMID: 34880705.
    31. Allen GI, Maletic-Savatic M. Sparse non-negative generalized PCA with applications to metabolomics. Bioinformatics. 2011 Nov 01; 27(21):3029-35. PMID: 21930672.
      Citations: 6     Fields:    
    32. Harshman LC, Yu RJ, Allen GI, Srinivas S, Gill HS, Chung BI. Surgical outcomes and complications associated with presurgical tyrosine kinase inhibition for advanced renal cell carcinoma (RCC). Urol Oncol. 2013 Apr; 31(3):379-85. PMID: 21353796.
      Citations: 18     Fields:    Translation:Humans
    33. Harshman LC, Bepler G, Zheng Z, Higgins JP, Allen GI, Srinivas S. Ribonucleotide reductase subunit M1 expression in resectable, muscle-invasive urothelial cancer correlates with survival in younger patients. BJU Int. 2010 Dec; 106(11):1805-11. PMID: 20438561.
      Citations: 9     Fields:    Translation:Humans
      Citations: 8     
    ALLEN's Networks
    Click the
    buttons for more information and interactive visualizations!
    Concepts (139)
    Co-Authors (17)
    Similar People (60)
    Same Department Expand Description
    Physical Neighbors