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GENEVERA ALLEN

TitleAssociate Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Pediatrics
DivisionPediatrics-Neurology
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Nagorski J, Allen GI. Genomic region detection via Spatial Convex Clustering. PLoS One. 2018; 13(9):e0203007. PMID: 30204756.
      View in: PubMed
    2. Yi H, Raman AT, Zhang H, Allen GI, Liu Z. Detecting hidden batch factors through data-adaptive adjustment for biological effects. Bioinformatics. 2018 04 01; 34(7):1141-1147. PMID: 29617963.
      View in: PubMed
    3. Liu Z, Zheng WJ, Allen GI, Liu Y, Ruan J, Zhao Z. The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools. BMC Bioinformatics. 2017 Oct 03; 18(Suppl 11):405. PMID: 28984189.
      View in: PubMed
    4. Zhao Z, Liu Z, Chen K, Guo Y, Allen GI, Zhang J, Jim Zheng W, Ruan J. The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics. BMC Genomics. 2017 Oct 03; 18(Suppl 6):703. PMID: 28984207.
      View in: PubMed
    5. Wan YW, Allen GI, Baker Y, Yang E, Ravikumar P, Anderson M, Liu Z. XMRF: an R package to fit Markov Networks to high-throughput genetics data. BMC Syst Biol. 2016 08 26; 10 Suppl 3:69. PMID: 27586041.
      View in: PubMed
    6. Narayan M, Allen GI. Mixed Effects Models for Resampled Network Statistics Improves Statistical Power to Find Differences in Multi-Subject Functional Connectivity. Front Neurosci. 2016; 10:108. PMID: 27147940.
      View in: PubMed
    7. Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme KL, Boutros PC, Caberlotto L, Caloian C, Campbell F, Chaibub Neto E, Chang YC, Chen B, Chen CY, Chien TY, Clark T, Das S, Davatzikos C, Deng J, Dillenberger D, Dobson RJ, Dong Q, Doshi J, Duma D, Errico R, Erus G, Everett E, Fardo DW, Friend SH, Fröhlich H, Gan J, St George-Hyslop P, Ghosh SS, Glaab E, Green RC, Guan Y, Hong MY, Huang C, Hwang J, Ibrahim J, Inglese P, Iyappan A, Jiang Q, Katsumata Y, Kauwe JS, Klein A, Kong D, Krause R, Lalonde E, Lauria M, Lee E, Lin X, Liu Z, Livingstone J, Logsdon BA, Lovestone S, Ma TW, Malhotra A, Mangravite LM, Maxwell TJ, Merrill E, Nagorski J, Namasivayam A, Narayan M, Naz M, Newhouse SJ, Norman TC, Nurtdinov RN, Oyang YJ, Pawitan Y, Peng S, Peters MA, Piccolo SR, Praveen P, Priami C, Sabelnykova VY, Senger P, Shen X, Simmons A, Sotiras A, Stolovitzky G, Tangaro S, Tateo A, Tung YA, Tustison NJ, Varol E, Vradenburg G, Weiner MW, Xiao G, Xie L, Xie Y, Xu J, Yang H, Zhan X, Zhou Y, Zhu F, Zhu H, Zhu S. Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimers Dement. 2016 06; 12(6):645-53. PMID: 27079753.
      View in: PubMed
    8. Yang E, Ravikumar P, Allen GI, Liu Z. Graphical Models via Univariate Exponential Family Distributions. J Mach Learn Res. 2015 Dec; 16:3813-3847. PMID: 27570498.
      View in: PubMed
    9. Wan YW, Allen GI, Liu Z. TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. Bioinformatics. 2016 03 15; 32(6):952-4. PMID: 26568634.
      View in: PubMed
    10. Tomson SN, Schreiner MJ, Narayan M, Rosser T, Enrique N, Silva AJ, Allen GI, Bookheimer SY, Bearden CE. Resting state functional MRI reveals abnormal network connectivity in neurofibromatosis 1. Hum Brain Mapp. 2015 Nov; 36(11):4566-81. PMID: 26304096.
      View in: PubMed
    11. Wan YW, Mach CM, Allen GI, Anderson ML, Liu Z. On the reproducibility of TCGA ovarian cancer microRNA profiles. PLoS One. 2014; 9(1):e87782. PMID: 24489963.
      View in: PubMed
    12. Zhang W, Wan YW, Allen GI, Pang K, Anderson ML, Liu Z. Molecular pathway identification using biological network-regularized logistic models. BMC Genomics. 2013; 14 Suppl 8:S7. PMID: 24564637.
      View in: PubMed
    13. Tomson SN, Narayan M, Allen GI, Eagleman DM. Neural networks of colored sequence synesthesia. J Neurosci. 2013 Aug 28; 33(35):14098-106. PMID: 23986245.
      View in: PubMed
    14. Allen GI, Liu Z. A Local Poisson Graphical Model for inferring networks from sequencing data. IEEE Trans Nanobioscience. 2013 Sep; 12(3):189-98. PMID: 23955777.
      View in: PubMed
    15. Allen GI, Peterson C, Vannucci M, Maletic-Savatic M. Regularized Partial Least Squares with an Application to NMR Spectroscopy. Stat Anal Data Min. 2013 Aug 01; 6(4):302-314. PMID: 24511361.
      View in: PubMed
    16. Allen GI, Maletic-Savatic M. Sparse non-negative generalized PCA with applications to metabolomics. Bioinformatics. 2011 Nov 01; 27(21):3029-35. PMID: 21930672.
      View in: PubMed
    17. Allen GI, Tibshirani R. TRANSPOSABLE REGULARIZED COVARIANCE MODELS WITH AN APPLICATION TO MISSING DATA IMPUTATION. Ann Appl Stat. 2010 Jun; 4(2):764-790. PMID: 26877823.
      View in: PubMed
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