MATTHEW BAKER

TitleAdjunct Assistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Biochemistry & Molecular Biology
Address
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    R21GM100229     (BAKER, MATTHEW LOWELL)Sep 10, 2013 - Aug 31, 2016
    NIH
    Atomic Resolution Cryo-EM using Model-Based Constraints
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W. Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nat Methods. 2021 02; 18(2):156-164. PMID: 33542514.
      Citations: 1     Fields:    
    2. Wang HJ, Lee CS, Yee RSZ, Groom L, Friedman I, Babcock L, Georgiou DK, Hong J, Hanna AD, Recio J, Choi JM, Chang T, Agha NH, Romero J, Sarkar P, Voermans N, Gaber MW, Jung SY, Baker ML, Pautler RG, Dirksen RT, Riazi S, Hamilton SL. Adaptive thermogenesis enhances the life-threatening response to heat in mice with an Ryr1 mutation. Nat Commun. 2020 10 09; 11(1):5099. PMID: 33037202.
      Citations: 1     Fields:    Translation:HumansAnimals
    3. Donovan LK, Delaidelli A, Joseph SK, Bielamowicz K, Fousek K, Holgado BL, Manno A, Srikanthan D, Gad AZ, Van Ommeren R, Przelicki D, Richman C, Ramaswamy V, Daniels C, Pallota JG, Douglas T, Joynt ACM, Haapasalo J, Nor C, Vladoiu MC, Kuzan-Fischer CM, Garzia L, Mack SC, Varadharajan S, Baker ML, Hendrikse L, Ly M, Kharas K, Balin P, Wu X, Qin L, Huang N, Stucklin AG, Morrissy AS, Cavalli FMG, Luu B, Suarez R, De Antonellis P, Michealraj A, Rastan A, Hegde M, Komosa M, Sirbu O, Kumar SA, Abdullaev Z, Faria CC, Yip S, Hukin J, Tabori U, Hawkins C, Aldape K, Daugaard M, Maris JM, Sorensen PH, Ahmed N, Taylor MD. Locoregional delivery of CAR T cells to the cerebrospinal fluid for treatment of metastatic medulloblastoma and ependymoma. Nat Med. 2020 05; 26(5):720-731. PMID: 32341580.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    4. Fousek K, Watanabe J, Joseph SK, George A, An X, Byrd TT, Morris JS, Luong A, Martínez-Paniagua MA, Sanber K, Navai SA, Gad AZ, Salsman VS, Mathew PR, Kim HN, Wagner DL, Brunetti L, Jang A, Baker ML, Varadarajan N, Hegde M, Kim YM, Heisterkamp N, Abdel-Azim H, Ahmed N. CAR T-cells that target acute B-lineage leukemia irrespective of CD19 expression. Leukemia. 2021 01; 35(1):75-89. PMID: 32205861.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    5. Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallogr D Struct Biol. 2019 Oct 01; 75(Pt 10):861-877. PMID: 31588918.
      Citations: 238     Translation:Cells
    6. Baker MC, Smith GP, Miloslavsky EM. Dermatomyositis Associated With a Skull Base Chondrosarcoma. J Clin Rheumatol. 2019 06; 25(4):50-53. PMID: 29664820.
      Citations: 1     Fields:    Translation:Humans
    7. Samaha H, Pignata A, Fousek K, Ren J, Lam FW, Stossi F, Dubrulle J, Salsman VS, Krishnan S, Hong SH, Baker ML, Shree A, Gad AZ, Shum T, Fukumura D, Byrd TT, Mukherjee M, Marrelli SP, Orange JS, Joseph SK, Sorensen PH, Taylor MD, Hegde M, Mamonkin M, Jain RK, El-Naggar S, Ahmed N. Retraction Note: A homing system targets therapeutic T cells to brain cancer. Nature. 2019 03; 567(7746):132. PMID: 30787441.
      Citations:    Fields:    
    8. Fan G, Baker MR, Wang Z, Seryshev AB, Ludtke SJ, Baker ML, Serysheva II. Cryo-EM reveals ligand induced allostery underlying InsP3R channel gating. Cell Res. 2018 12; 28(12):1158-1170. PMID: 30470765.
      Citations: 7     Fields:    Translation:AnimalsCells
    9. Chen M, Baker ML. Automation and assessment of de novo modeling with Pathwalking in near atomic resolution cryoEM density maps. J Struct Biol. 2018 12; 204(3):555-563. PMID: 30237066.
      Citations: 4     Fields:    Translation:Cells
    10. Samaha H, Pignata A, Fousek K, Ren J, Lam FW, Stossi F, Dubrulle J, Salsman VS, Krishnan S, Hong SH, Baker ML, Shree A, Gad AZ, Shum T, Fukumura D, Byrd TT, Mukherjee M, Marrelli SP, Orange JS, Joseph SK, Sorensen PH, Taylor MD, Hegde M, Mamonkin M, Jain RK, El-Naggar S, Ahmed N. A homing system targets therapeutic T cells to brain cancer. Nature. 2018 09; 561(7723):331-337. PMID: 30185905.
      Citations: 7     Fields:    
    11. Byrd TT, Fousek K, Pignata A, Szot C, Samaha H, Seaman S, Dobrolecki L, Salsman VS, Oo HZ, Bielamowicz K, Landi D, Rainusso N, Hicks J, Powell S, Baker ML, Wels WS, Koch J, Sorensen PH, Deneen B, Ellis MJ, Lewis MT, Hegde M, Fletcher BS, St Croix B, Ahmed N. TEM8/ANTXR1-Specific CAR T Cells as a Targeted Therapy for Triple-Negative Breast Cancer. Cancer Res. 2018 01 15; 78(2):489-500. PMID: 29183891.
      Citations: 26     Fields:    Translation:HumansAnimalsCells
    12. Dou H, Burrows DW, Baker ML, Ju T. Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences. Biophys J. 2017 Jun 20; 112(12):2479-2493. PMID: 28636906.
      Citations: 3     Fields:    Translation:Cells
    13. Chen M, Baldwin PR, Ludtke SJ, Baker ML. De Novo modeling in cryo-EM density maps with Pathwalking. J Struct Biol. 2016 12; 196(3):289-298. PMID: 27436409.
      Citations: 22     Fields:    Translation:Cells
    14. Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W. EMDataBank unified data resource for 3DEM. Nucleic Acids Res. 2016 Jan 04; 44(D1):D396-403. PMID: 26578576.
      Citations: 45     Fields:    
    15. Fan G, Baker ML, Wang Z, Baker MR, Sinyagovskiy PA, Chiu W, Ludtke SJ, Serysheva II. Gating machinery of InsP3R channels revealed by electron cryomicroscopy. Nature. 2015 Nov 19; 527(7578):336-41. PMID: 26458101.
      Citations: 81     Fields:    Translation:AnimalsCells
    16. Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA. Domain organization and conformational plasticity of the G protein effector, PDE6. J Biol Chem. 2015 Jul 10; 290(28):17131-2. PMID: 26163476.
      Citations: 3     Fields:    
    17. Zhang Z, He F, Constantine R, Baker ML, Baehr W, Schmid MF, Wensel TG, Agosto MA. Domain organization and conformational plasticity of the G protein effector, PDE6. J Biol Chem. 2015 May 15; 290(20):12833-43. PMID: 25809480.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    18. Gipson P, Baker ML, Raytcheva D, Haase-Pettingell C, Piret J, King JA, Chiu W. Corrigendum: Protruding knob-like proteins violate local symmetries in an icosahedral marine virus. Nat Commun. 2015 Jan 12; 6:6040. PMID: 25581040.
      Citations:    Fields:    
    19. Wang Z, Hryc CF, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W. An atomic model of brome mosaic virus using direct electron detection and real-space optimization. Nat Commun. 2014 Sep 04; 5:4808. PMID: 25185801.
      Citations: 53     Fields:    Translation:Cells
    20. Baker MJ, Trevisan J, Bassan P, Bhargava R, Butler HJ, Dorling KM, Fielden PR, Fogarty SW, Fullwood NJ, Heys KA, Hughes C, Lasch P, Martin-Hirsch PL, Obinaju B, Sockalingum GD, Sulé-Suso J, Strong RJ, Walsh MJ, Wood BR, Gardner P, Martin FL. Using Fourier transform IR spectroscopy to analyze biological materials. Nat Protoc. 2014 Aug; 9(8):1771-91. PMID: 24992094.
      Citations: 196     Fields:    Translation:Humans
    21. Gipson P, Baker ML, Raytcheva D, Haase-Pettingell C, Piret J, King JA, Chiu W. Protruding knob-like proteins violate local symmetries in an icosahedral marine virus. Nat Commun. 2014 Jul 02; 5:4278. PMID: 24985522.
      Citations: 7     Fields:    Translation:Cells
    22. Rizzo AA, Suhanovsky MM, Baker ML, Fraser LC, Jones LM, Rempel DL, Gross ML, Chiu W, Alexandrescu AT, Teschke CM. Multiple functional roles of the accessory I-domain of bacteriophage P22 coat protein revealed by NMR structure and CryoEM modeling. Structure. 2014 Jun 10; 22(6):830-41. PMID: 24836025.
      Citations: 27     Fields:    Translation:Cells
    23. van Blitterswijk M, Baker MC, DeJesus-Hernandez M, Ghidoni R, Benussi L, Finger E, Hsiung GY, Kelley BJ, Murray ME, Rutherford NJ, Brown PE, Ravenscroft T, Mullen B, Ash PE, Bieniek KF, Hatanpaa KJ, Karydas A, Wood EM, Coppola G, Bigio EH, Lippa C, Strong MJ, Beach TG, Knopman DS, Huey ED, Mesulam M, Bird T, White CL, Kertesz A, Geschwind DH, Van Deerlin VM, Petersen RC, Binetti G, Miller BL, Petrucelli L, Wszolek ZK, Boylan KB, Graff-Radford NR, Mackenzie IR, Boeve BF, Dickson DW, Rademakers R. C9ORF72 repeat expansions in cases with previously identified pathogenic mutations. Neurology. 2013 Oct 08; 81(15):1332-41. PMID: 24027057.
      Citations: 27     Fields:    Translation:HumansCells
    24. Baker ML, Hryc CF, Zhang Q, Wu W, Jakana J, Haase-Pettingell C, Afonine PV, Adams PD, King JA, Jiang W, Chiu W. Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling. Proc Natl Acad Sci U S A. 2013 Jul 23; 110(30):12301-6. PMID: 23840063.
      Citations: 37     Fields:    Translation:Cells
    25. Grada Z, Hegde M, Byrd T, Shaffer DR, Ghazi A, Brawley VS, Corder A, Schönfeld K, Koch J, Dotti G, Heslop HE, Gottschalk S, Wels WS, Baker ML, Ahmed N. TanCAR: A Novel Bispecific Chimeric Antigen Receptor for Cancer Immunotherapy. Mol Ther Nucleic Acids. 2013 Jul 09; 2:e105. PMID: 23839099.
      Citations: 138     
    26. Baker ML, Baker MR, Hryc CF, Ju T, Chiu W. Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps. Biopolymers. 2012 Sep; 97(9):655-68. PMID: 22696403.
      Citations: 16     Fields:    Translation:Cells
    27. Kramer DB, Baker M, Ransford B, Molina-Markham A, Stewart Q, Fu K, Reynolds MR. Security and privacy qualities of medical devices: an analysis of FDA postmarket surveillance. PLoS One. 2012; 7(7):e40200. PMID: 22829874.
      Citations: 7     Fields:    Translation:Humans
    28. Khan BK, Yokoyama JS, Takada LT, Sha SJ, Rutherford NJ, Fong JC, Karydas AM, Wu T, Ketelle RS, Baker MC, Hernandez MD, Coppola G, Geschwind DH, Rademakers R, Lee SE, Rosen HJ, Rabinovici GD, Seeley WW, Rankin KP, Boxer AL, Miller BL. Atypical, slowly progressive behavioural variant frontotemporal dementia associated with C9ORF72 hexanucleotide expansion. J Neurol Neurosurg Psychiatry. 2012 Apr; 83(4):358-64. PMID: 22399793.
      Citations: 66     Fields:    Translation:HumansCells
    29. Baker MR, Rees I, Ludtke SJ, Chiu W, Baker ML. Constructing and validating initial Ca models from subnanometer resolution density maps with pathwalking. Structure. 2012 Mar 07; 20(3):450-63. PMID: 22405004.
      Citations: 16     Fields:    Translation:Cells
    30. Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG, Schmid MF, Schröder GF, Steven AC, Stokes DL, Westbrook JD, Wriggers W, Yang H, Young J, Berman HM, Chiu W, Kleywegt GJ, Lawson CL. Outcome of the first electron microscopy validation task force meeting. Structure. 2012 Feb 08; 20(2):205-14. PMID: 22325770.
      Citations: 197     Fields:    Translation:HumansAnimalsCells
    31. Chang J, Liu X, Rochat RH, Baker ML, Chiu W. Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography. Adv Exp Med Biol. 2012; 726:49-90. PMID: 22297510.
      Citations: 18     Fields:    Translation:HumansAnimalsCells
    32. Baker ML, Baker MR, Cong, Y. Computational Methods for Interpretation of EM Maps at Subnanometer Resolution. 2012. View Publication.
    33. Dopper EG, Seelaar H, Chiu WZ, de Koning I, van Minkelen R, Baker MC, Rozemuller AJ, Rademakers R, van Swieten JC. Symmetrical corticobasal syndrome caused by a novel C.314dup progranulin mutation. J Mol Neurosci. 2011 Nov; 45(3):354-8. PMID: 21863316.
      Citations: 7     Fields:    Translation:Humans
    34. Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W. 4.4 Å cryo-EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus. EMBO J. 2011 Aug 09; 30(18):3854-63. PMID: 21829169.
      Citations: 84     Fields:    Translation:AnimalsCells
    35. Srinivasan S, Vyas NK, Baker ML, Quiocho FA. Crystal structure of the cytoplasmic N-terminal domain of subunit I, a homolog of subunit a, of V-ATPase. J Mol Biol. 2011 Sep 09; 412(1):14-21. PMID: 21787787.
      Citations: 25     Fields:    Translation:Cells
    36. Baker ML, Abeysinghe SS, Schuh S, Coleman RA, Abrams A, Marsh MP, Hryc CF, Ruths T, Chiu W, Ju T. Modeling protein structure at near atomic resolutions with Gorgon. J Struct Biol. 2011 May; 174(2):360-73. PMID: 21296162.
      Citations: 37     Fields:    Translation:Cells
    37. Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W. Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus. Proc Natl Acad Sci U S A. 2011 Jan 25; 108(4):1355-60. PMID: 21220301.
      Citations: 99     Fields:    Translation:Cells
    38. Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, Velankar S, Warren J, Westbrook JD, Henrick K, Kleywegt GJ, Berman HM, Chiu W. EMDataBank.org: unified data resource for CryoEM. Nucleic Acids Res. 2011 Jan; 39(Database issue):D456-64. PMID: 20935055.
      Citations: 112     Fields:    
    39. Baker ML, Zhang J, Ludtke SJ, Chiu W. Cryo-EM of macromolecular assemblies at near-atomic resolution. Nat Protoc. 2010 Sep; 5(10):1697-708. PMID: 20885381.
      Citations: 44     Fields:    Translation:Cells
    40. Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty MT, Schmid MF, Osburne MS, Chisholm SW, Chiu W. Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus. Nat Struct Mol Biol. 2010 Jul; 17(7):830-6. PMID: 20543830.
      Citations: 80     Fields:    Translation:Cells
    41. Haspel N, Moll M, Baker ML, Chiu W, Kavraki LE. Tracing conformational changes in proteins. BMC Struct Biol. 2010 May 17; 10 Suppl 1:S1. PMID: 20487508.
      Citations: 17     Fields:    Translation:Cells
    42. Cong Y, Baker ML, Jakana J, Woolford D, Miller EJ, Reissmann S, Kumar RN, Redding-Johanson AM, Batth TS, Mukhopadhyay A, Ludtke SJ, Frydman J, Chiu W. 4.0-A resolution cryo-EM structure of the mammalian chaperonin TRiC/CCT reveals its unique subunit arrangement. Proc Natl Acad Sci U S A. 2010 Mar 16; 107(11):4967-72. PMID: 20194787.
      Citations: 74     Fields:    Translation:AnimalsCells
    43. Zhang J, Baker ML, Schröder GF, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W. Mechanism of folding chamber closure in a group II chaperonin. Nature. 2010 Jan 21; 463(7279):379-83. PMID: 20090755.
      Citations: 97     Fields:    Translation:Cells
    44. Baker M, Prasad BV. Rotavirus cell entry. Curr Top Microbiol Immunol. 2010; 343:121-48. PMID: 20397068.
      Citations: 15     Fields:    Translation:HumansAnimalsCells
    45. Baker ML, Baker MR, Hryc CF, Dimaio F. Analyses of subnanometer resolution cryo-EM density maps. Methods Enzymol. 2010; 483:1-29. PMID: 20888467.
      Citations: 16     Fields:    Translation:Cells
    46. Baker ML, Marsh MP, Chiu W. Nanotechnology. Electron Cryomicroscopy of Molecular Nanomachines and Cells. 2010; 89-111.
    47. Abeysinghe S, Baker ML, Chiu W, Ju T. Semi-isometric registration of line features for flexible fitting of protein structures. Comput Graph Forum. 2010; 29(7):2243-2252. PMID: 21124809.
      Citations: 5     
    48. DiMaio F, Tyka MD, Baker ML, Chiu W, Baker D. Refinement of protein structures into low-resolution density maps using rosetta. J Mol Biol. 2009 Sep 11; 392(1):181-90. PMID: 19596339.
      Citations: 145     Fields:    
    49. Li Z, Baker ML, Jiang W, Estes MK, Prasad BV. Rotavirus architecture at subnanometer resolution. J Virol. 2009 Feb; 83(4):1754-66. PMID: 19036817.
      Citations: 45     Fields:    Translation:Cells
    50. Serysheva II, Ludtke SJ, Baker ML, Cong Y, Topf M, Eramian D, Sali A, Hamilton SL, Chiu W. Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A. 2008 Jul 15; 105(28):9610-5. PMID: 18621707.
      Citations: 59     Fields:    Translation:Cells
    51. Ludtke SJ, Baker ML, Chen DH, Song JL, Chuang DT, Chiu W. De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure. 2008 Mar; 16(3):441-8. PMID: 18334219.
      Citations: 96     Fields:    Translation:Cells
    52. Jiang W, Baker ML, Jakana J, Weigele PR, King J, Chiu W. Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy. Nature. 2008 Feb 28; 451(7182):1130-4. PMID: 18305544.
      Citations: 116     Fields:    Translation:Cells
    53. Abeysinge, S., Ju, T., Baker, M.L., Chiu, W. Shape modeling and matching in identifying 3D protein structures. Computer Aided-Design. 2008; (40):708-720.
    54. Baker ML, Zhou ZH, Chiu W. Segmented Double-stranded RNA Viruses: Structure and Molecular Biology, J. T. Patton, ed. Structure of Phytoreovirus. 2008; 89-103.
    55. Abeysinge S, Baker ML, Chiu W, Ju T. IEEE International Conference on Shape Modeling and Applications 2008. Segmentation-free skeletonization of grayscale volumes for shape understanding. 2008; 63-71.
    56. Ju T, Baker ML, Chiu W. Computing a family of skeletons of volumetric models for shape description. Comput Aided Des. 2007 May; 39(5):352-360. PMID: 18449328.
      Citations: 17     
    57. Abeysinghe S, Ju T, Baker ML, Chiu W. ACM Symposium on Solid and Physical Modeling 2007. Shape modeling and matching in identifying protein structure from low-resolution images. 2007.
    58. Baker ML, Ju T, Chiu W. Identification of secondary structure elements in intermediate-resolution density maps. Structure. 2007 Jan; 15(1):7-19. PMID: 17223528.
      Citations: 85     Fields:    Translation:Cells
    59. Baker ML, Jiang W, Wedemeyer WJ, Rixon FJ, Baker D, Chiu W. Ab initio modeling of the herpesvirus VP26 core domain assessed by CryoEM density. PLoS Comput Biol. 2006 Oct 27; 2(10):e146. PMID: 17069457.
      Citations: 24     Fields:    Translation:Cells
    60. Marsh MP, Campos SK, Baker ML, Chen CY, Chiu W, Barry MA. Cryoelectron microscopy of protein IX-modified adenoviruses suggests a new position for the C terminus of protein IX. J Virol. 2006 Dec; 80(23):11881-6. PMID: 16987967.
      Citations: 20     Fields:    Translation:Cells
    61. Baker ML, Yu Z, Chiu W, Bajaj C. Automated segmentation of molecular subunits in electron cryomicroscopy density maps. J Struct Biol. 2006 Dec; 156(3):432-41. PMID: 16908194.
      Citations: 25     Fields:    Translation:Cells
    62. Chiu W, Baker ML, Almo SC. Structural biology of cellular machines. Trends Cell Biol. 2006 Mar; 16(3):144-50. PMID: 16459078.
      Citations: 22     Fields:    Translation:AnimalsCells
    63. Topf M, Baker ML, Marti-Renom MA, Chiu W, Sali A. Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. J Mol Biol. 2006 Apr 14; 357(5):1655-68. PMID: 16490207.
      Citations: 53     Fields:    Translation:Cells
    64. Ju T, Baker ML, Chiu W. Proceedings of Geometric Modeling and Processing 2006. Computing a family of skeletons of volumetric models for shape description. 2006; 235-247.
    65. Baker ML, Jiang W, Rixon FJ, Chiu W. Common ancestry of herpesviruses and tailed DNA bacteriophages. J Virol. 2005 Dec; 79(23):14967-70. PMID: 16282496.
      Citations: 126     Fields:    Translation:Cells
    66. Chiu W, Baker ML, Jiang W, Dougherty M, Schmid MF. Electron cryomicroscopy of biological machines at subnanometer resolution. Structure. 2005 Mar; 13(3):363-72. PMID: 15766537.
      Citations: 55     Fields:    Translation:Cells
    67. Topf M, Baker ML, John B, Chiu W, Sali A. Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy. J Struct Biol. 2005 Feb; 149(2):191-203. PMID: 15681235.
      Citations: 43     Fields:    Translation:Cells
    68. Booth CR, Jiang W, Baker ML, Zhou ZH, Ludtke SJ, Chiu W. A 9 angstroms single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope. J Struct Biol. 2004 Aug; 147(2):116-27. PMID: 15193640.
      Citations: 25     Fields:    Translation:Cells
    69. Jiang W, Baker ML, Wu Q, Bajaj C, Chiu W. Applications of a bilateral denoising filter in biological electron microscopy. J Struct Biol. 2003 Oct-Nov; 144(1-2):114-22. PMID: 14643214.
      Citations: 34     Fields:    Translation:Cells
    70. Baker ML, Jiang W, Bowman BR, Zhou ZH, Quiocho FA, Rixon FJ, Chiu W. Architecture of the herpes simplex virus major capsid protein derived from structural bioinformatics. J Mol Biol. 2003 Aug 08; 331(2):447-56. PMID: 12888351.
      Citations: 13     Fields:    Translation:Cells
    71. Bowman BR, Baker ML, Rixon FJ, Chiu W, Quiocho FA. Structure of the herpesvirus major capsid protein. EMBO J. 2003 Feb 17; 22(4):757-65. PMID: 12574112.
      Citations: 42     Fields:    Translation:Cells
    72. Jiang W, Li Z, Zhang Z, Baker ML, Prevelige PE, Chiu W. Coat protein fold and maturation transition of bacteriophage P22 seen at subnanometer resolutions. Nat Struct Biol. 2003 Feb; 10(2):131-5. PMID: 12536205.
      Citations: 81     Fields:    Translation:Cells
    73. Baker ML, Serysheva II, Sencer S, Wu Y, Ludtke SJ, Jiang W, Hamilton SL, Chiu W. The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain. Proc Natl Acad Sci U S A. 2002 Sep 17; 99(19):12155-60. PMID: 12218169.
      Citations: 21     Fields:    Translation:AnimalsCells
    74. Chiu W, Baker ML, Jiang W, Zhou ZH. Deriving folds of macromolecular complexes through electron cryomicroscopy and bioinformatics approaches. Curr Opin Struct Biol. 2002 Apr; 12(2):263-9. PMID: 11959506.
      Citations: 11     Fields:    Translation:Cells
    75. Jiang W, Li Z, Zhang Z, Booth CR, Baker ML, Chiu W. Semi-automated icosahedral particle reconstruction at sub-nanometer resolution. J Struct Biol. 2001 Dec; 136(3):214-25. PMID: 12051901.
      Citations: 7     Fields:    Translation:Cells
    76. Zhou ZH, Baker ML, Jiang W, Dougherty M, Jakana J, Dong G, Lu G, Chiu W. Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus. Nat Struct Biol. 2001 Oct; 8(10):868-73. PMID: 11573092.
      Citations: 45     Fields:    Translation:Cells
    77. Jiang W, Baker ML, Ludtke SJ, Chiu W. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J Mol Biol. 2001 May 18; 308(5):1033-44. PMID: 11352589.
      Citations: 107     Fields:    Translation:Cells
    78. Petrosino JF, Baker M, Palzkill T. Susceptibility of beta-lactamase to core amino acid substitutions. Protein Eng. 1999 Sep; 12(9):761-9. PMID: 10506286.
      Citations: 2     Fields:    Translation:Cells
    79. Lu G, Zhou ZH, Baker ML, Jakana J, Cai D, Wei X, Chen S, Gu X, Chiu W. Structure of double-shelled rice dwarf virus. J Virol. 1998 Nov; 72(11):8541-9. PMID: 9765392.
      Citations: 12     Fields:    Translation:AnimalsCells
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