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STEPHEN RICHARDS

AddressOne Baylor Plaza
Houston, TX 77030
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Labb? F, Abdeladhim M, Abrudan J, Araki AS, Araujo RN, Arensburger P, Benoit JB, Brazil RP, Bruno RV, Bueno da Silva Rivas G, Carvalho de Abreu V, Charamis J, Coutinho-Abreu IV, da Costa-Latg? SG, Darby A, Dillon VM, Emrich SJ, Fernandez-Medina D, Figueiredo Gontijo N, Flanley CM, Gatherer D, Genta FA, Gesing S, Giraldo-Calder?n GI, Gomes B, Aguiar ERGR, Hamilton JGC, Hamarsheh O, Hawksworth M, Hendershot JM, Hickner PV, Imler JL, Ioannidis P, Jennings EC, Kamhawi S, Karageorgiou C, Kennedy RC, Krueger A, Latorre-Estivalis JM, Ligoxygakis P, Meireles-Filho ACA, Minx P, Miranda JC, Montague MJ, Nowling RJ, Oliveira F, Ortig?o-Farias J, Pavan MG, Horacio Pereira M, Nobrega Pitaluga A, Proveti Olmo R, Ramalho-Ortigao M, Ribeiro JMC, Rosendale AJ, Sant'Anna MRV, Scherer SE, Secundino NFC, Shoue DA, da Silva Moraes C, Gesto JSM, Souza NA, Syed Z, Tadros S, Teles-de-Freitas R, Telleria EL, Tomlinson C, Traub-Csek? YM, Marques JT, Tu Z, Unger MF, Valenzuela J, Ferreira FV, de Oliveira KPV, Vigoder FM, Vontas J, Wang L, Weedall GD, Zhioua E, Richards S, Warren WC, Waterhouse RM, Dillon RJ, McDowell MA. Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World. PLoS Negl Trop Dis. 2023 04; 17(4):e0010862. PMID: 37043542; PMCID: PMC10138862.
      Citations: 1     Fields:    Translation:HumansAnimals
    2. Attrill E, Richards SM, Ross RM, Sutherland BA, Premilovac D. Induction of Type 2 Diabetes in Mice to Understand Vascular Changes That Drive Diabetic Retinopathy. Methods Mol Biol. 2023; 2678:1-12. PMID: 37326701.
      Citations:    Fields:    Translation:Animals
    3. Lewin HA, Richards S, Lieberman Aiden E, Allende ML, Archibald JM, Barker KB, Baumgartner B, Belov K, Bertorelle G, Blaxter ML, Cai J, Caperello ND, Carlson K, Chaw SM, Chen L, Childers AK, Coddington JA, Conde DA, Corominas M, Crandall KA, DiPalma F, Durbin R, Ebenezer TE, Edwards SV, Fedrigo O, Flicek P, Formenti G, Gibbs RA, Gilbert MTP, Goldstein MM, Graves JM, Greely HT, Grigoriev IV, Hackett KJ, Hall N, Haussler D, Helgen KM, Hogg CJ, Isobe S, Jakobsen KS, Janke A, Jarvis ED, Johnson WE, Jones SJM, Karlsson EK, Kersey PJ, Kim JH, Kress WJ, Kuraku S, Lawniczak MKN, Leebens-Mack JH, Li X, Lindblad-Toh K, Liu X, Lopez JV, Marques-Bonet T, Mazard S, Mazet JAK, Mazzoni CJ, Myers EW, O'Neill RJ, Paez S, Park H, Robinson GE, Ryder OA, Sabir JSM, Shaffer HB, Shank TM, Sherkow JS, Soltis PS, Tang B, Tedersoo L, Uliano-Silva M, Wang K, Wei X, Wetzer R, Wilson JL, Xu X, Yang H, Yoder AD, Zhang G, B?lint M, Castilla-Rubio JC, Crawford AJ, Roquet C. The Earth BioGenome Project 2020: Starting the clock. Proc Natl Acad Sci U S A. 2022 01 25; 119(4). PMID: 35042800; PMCID: PMC8795548.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    4. Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Childers AK, Coddington JA, Crandall KA, Davey RP, Di Palma F, Fang Q, Haerty W, Hall N, Hoff KJ, Howe K, Jarvis ED, Johnson WE, Johnson RN, Kersey PJ, Liu X, Lopez JV, Myers EW, Pettersson OV, Phillippy AM, Poelchau MF, Pruitt KD, Rhie A, Sahu SK, Salmon NA, Soltis PS, Swarbreck D, Wang S, Wegrzyn JL, Zhang G, Zhang H, Lewin HA, Richards S, Marques Bonet T, Crawford AJ, Castilla-Rubio JC, Thibaud-Nissen F. Standards recommendations for the Earth BioGenome Project. Proc Natl Acad Sci U S A. 2022 01 25; 119(4). PMID: 35042802; PMCID: PMC8795494.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    5. Richards SM, Breen J, Estrada O. Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens. Methods Mol Biol. 2022; 2512:261-267. PMID: 35818010.
      Citations:    Fields:    Translation:Animals
    6. Petersen M, Gibbs RA, Hering L, Mayer G, Richards S, Niehuis O, Misof B, Armis?n D, Khila A. Correction to: Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. BMC Ecol Evol. 2021 Jul 16; 21(1):146. PMID: 34271865; PMCID: PMC8285782.
      Citations:    Fields:    
    7. Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, Widana Gamage SMK, Hughes DST, Murali SC, Bailey ST, Bejerman NE, Holmes CJ, Jennings EC, Rosendale AJ, Rosselot A, Hervey K, Schneweis BA, Cheng S, Childers C, Dietzgen RG, Chao H, Dinh H, Doddapaneni HV, Dugan S, Han Y, Lee SL, Muzny DM, Qu J, Worley KC, Benoit JB, Friedrich M, Jones JW, Panfilio KA, Park Y, Robertson HM, Smagghe G, Ullman DE, van der Zee M, Van Leeuwen T, Veenstra JA, Waterhouse RM, Weirauch MT, Werren JH, Whitfield AE, Zdobnov EM, Gibbs RA, Richards S, Sim?o FA. Genome-enabled insights into the biology of thrips as crop pests. BMC Biol. 2020 10 19; 18(1):142. PMID: 33070780; PMCID: PMC7570057.
      Citations: 13     Fields:    Translation:AnimalsCells
    8. Fuller ZL, Koury SA, Leonard CJ, Young RE, Ikegami K, Westlake J, Richards S, Schaeffer SW, Phadnis N. Extensive Recombination Suppression and Epistatic Selection Causes Chromosome-Wide Differentiation of a Selfish Sex Chromosome in Drosophila pseudoobscura. Genetics. 2020 09; 216(1):205-226. PMID: 32732371; PMCID: PMC7463281.
      Citations: 4     Fields:    Translation:AnimalsCells
    9. Oeyen JP, Benoit JB, Beukeboom LW, Cash EI, Chao H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grimmelikhuijzen CJP, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jennings EC, Jones JW, Lee SL, Lovegrove M, Martin S, Martynov AG, Mayer C, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Pauli T, Peters RS, Petersen M, Pick C, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O, Baa-Puyoulet P, Bornberg-Bauer E, Buttstedt A, Calevro F, Charles H, Dowling D, Grath S, Gro?e-Wilde E, Jacquin-Joly E, Klasberg S, Lesn? P, Montagn? N, Parisot N, Persyn E, von Reumont BM, Vedder L. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biol Evol. 2020 07 01; 12(7):1099-1188. PMID: 32442304; PMCID: PMC7455281.
      Citations: 6     Fields:    Translation:AnimalsCells
    10. Narita TB, Kawabe Y, Kin K, Gibbs RA, Kuspa A, Muzny DM, Richards S, Strassmann JE, Sucgang R, Worley KC, Schaap P. Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum. Genome Biol Evol. 2020 05 01; 12(5):674-683. PMID: 32386295; PMCID: PMC7259674.
      Citations: 3     Fields:    Translation:Animals
    11. Thomas GWC, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Hahn MW, Richards S, Dohmen E, Khila A, Prpic NM, Bornberg-Bauer E. Gene content evolution in the arthropods. Genome Biol. 2020 01 23; 21(1):15. PMID: 31969194; PMCID: PMC6977273.
      Citations: 46     Fields:    Translation:AnimalsCells
    12. Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, Duncan EJ, Vreede BMI, Baa-Puyoulet P, Chang CC, Chao H, Chen MM, Childers CP, Chipman AD, Cridge AG, Dearden PK, Didion EM, Dinh H, Doddapaneni HV, Dolan A, Dugan S, Extavour CG, Friedrich M, Ginzburg N, Han Y, Holmes CJ, Hsiao YM, Jennings EC, Johnston JS, Jones TE, Jones JW, Kovacova V, Leask M, Lee SL, Lee CY, Lovegrove MR, Lu HL, Lu Y, Moore PJ, Munoz-Torres MC, Muzny DM, Palli SR, Parisot N, Pick L, Porter ML, Qu J, Richter R, Rivera-Pomar R, Rosendale AJ, Shukla JN, Tidswell O, van der Zee M, Worley KC, Zdobnov EM, Gibbs RA, Richards S, Panfilio KA, Vargas Jentzsch IM, Armis?n D, Berger CS, Chen YT, Crumi?re AJJ, Febvay G, Heger P, Horn T, Khila A, Koelzer S, Refki PN, Roth S, Sachs L, Santos ME, Seibert J, Sghaier E, Stancliffe RJ, Traverso L, Viala S. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biol. 2019 04 02; 20(1):64. PMID: 30935422; PMCID: PMC6444547.
      Citations: 29     Fields:    Translation:AnimalsCells
    13. Petersen M, Gibbs RA, Hering L, Mayer G, Richards S, Niehuis O, Misof B, Armis?n D, Khila A. Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. BMC Evol Biol. 2019 01 09; 19(1):11. PMID: 30626321; PMCID: PMC6327564.
      Citations: 42     Fields:    Translation:AnimalsCells
    14. Richards S. Arthropod Genome Sequencing and Assembly Strategies. Methods Mol Biol. 2019; 1858:1-14. PMID: 30414106.
      Citations: 4     Fields:    Translation:Animals
    15. Richards S. Full disclosure: Genome assembly is still hard. PLoS Biol. 2018 04; 16(4):e2005894. PMID: 29689052; PMCID: PMC5915270.
      Citations: 6     Fields:    Translation:AnimalsCells
    16. Wiegmann BM, Richards S. Genomes of Diptera. Curr Opin Insect Sci. 2018 02; 25:116-124. PMID: 29602357.
      Citations: 12     Fields:    Translation:Animals
    17. Richards S, Childers A, Childers C. Editorial overview: Insect genomics: Arthropod genomic resources for the 21st century: It only counts if it's in the database! Curr Opin Insect Sci. 2018 02; 25:iv-vii. PMID: 29602370.
      Citations: 1     Fields:    Translation:AnimalsCells
    18. Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, Engsontia P, Friedrich M, Gibbs RA, Goswami C, Grapputo A, Gruden K, Grynberg M, Jennings EC, Jones JW, Kalsi M, Khan SA, Kumar A, Li F, Ma X, Martynov A, Miller NJ, Mitchell RF, Munoz-Torres M, Muszewska A, Oppert B, Palli SR, Pauchet Y, Perkin LC, Petek M, Poelchau MF, Rinehart JP, Robertson HM, Rosendale AJ, Ruiz-Arroyo VM, Smagghe G, Szendrei Z, Thomas GWC, Torson AS, Weirauch MT, Yates AD, Yocum GD, Yoon JS, Richards S, Garc?a-Robles I, Henrissat B, Lombard V, Panfilio KA, Record ?, Vargas Jentzsch IM. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Sci Rep. 2018 01 31; 8(1):1931. PMID: 29386578; PMCID: PMC5792627.
      Citations: 71     Fields:    Translation:AnimalsCellsPHPublic Health
    19. Fuller ZL, Haynes GD, Richards S, Schaeffer SW. Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura. Mol Ecol. 2017 Dec; 26(23):6539-6562. PMID: 29055159.
      Citations: 17     Fields:    Translation:Animals
    20. Tobler R, Rohrlach A, Soubrier J, Bover P, Llamas B, Tuke J, Bean N, Abdullah-Highfold A, Agius S, O'Donoghue A, O'Loughlin I, Sutton P, Zilio F, Walshe K, Williams AN, Turney CSM, Williams M, Richards SM, Mitchell RJ, Kowal E, Stephen JR, Williams L, Haak W, Cooper A. Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature. 2017 04 13; 544(7649):180-184. PMID: 28273067.
      Citations: 29     Fields:    Translation:Humans
    21. Gendreau KL, Haney RA, Schwager EE, Richards S, Garb JE, Wierschin T, Stanke M. House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity. BMC Genomics. 2017 02 16; 18(1):178. PMID: 28209133; PMCID: PMC5314461.
      Citations: 19     Fields:    Translation:AnimalsCells
    22. Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Cavanaugh JP, Chao H, Childers C, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Gibbs RA, Giers SD, Gomulski LM, Han Y, Hughes DS, Jones JW, Koskinioti P, Lee SL, Malacrida AR, Mathiopoulos K, Meccariello A, Munoz-Torres M, Murali SC, Murphy TD, Muzny DM, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Werren JH, Worley KC, Zacharopoulou A, Richards S, Casta?era P, Curril I, Georgakilas G, Gonz?lez-Guzm?n M, Guillem-Amat A, Hatzigeorgiou AG, Hern?ndez-Crespo P, Karagkouni D, Manni M, Oberhofer G, Ortego F, Paraskevopoulou MD, Ure?a E, S Vlachos I, Wimmer EA, Handler AM. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol. 2017 01 18; 18(1):11. PMID: 28100280; PMCID: PMC5241912.
      Citations: 1     Fields:    
    23. Worley KC, Richards S, Rogers J. The value of new genome references. Exp Cell Res. 2017 09 15; 358(2):433-438. PMID: 28017728; PMCID: PMC5481500.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    24. McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Calla B, Chao H, Childers AK, Childers C, Clarke DJ, Cohen L, Demuth JP, Dinh H, Doddapaneni H, Dolan A, Duan JJ, Dugan S, Friedrich M, Glastad KM, Goodisman MA, Haddad S, Han Y, Hughes DS, Ioannidis P, Johnston JS, Jones JW, Kuhn LA, Lance DR, Lee CY, Lee SL, Lin H, Lynch JA, Moczek AP, Murali SC, Muzny DM, Nelson DR, Palli SR, Panfilio KA, Pers D, Poelchau MF, Quan H, Qu J, Ray AM, Rinehart JP, Robertson HM, Roehrdanz R, Rosendale AJ, Shin S, Silva C, Torson AS, Jentzsch IM, Werren JH, Worley KC, Yocum G, Zdobnov EM, Gibbs RA, Richards S, Busch A. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biol. 2016 11 11; 17(1):227. PMID: 27832824; PMCID: PMC5105290.
      Citations: 91     Fields:    Translation:Animals
    25. Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Cavanaugh JP, Chao H, Childers C, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs RA, Giers SD, Gomulski LM, Han Y, Hatzigeorgiou AG, Hughes DS, Jones JW, Karagkouni D, Koskinioti P, Lee SL, Malacrida AR, Mathiopoulos K, Meccariello A, Murali SC, Murphy TD, Muzny DM, Paraskevopoulou MD, Poelchau M, Qu J, Reczko M, Robertson HM, Rosendale AJ, Rosselot AE, Saccone G, Salvemini M, Savini G, Schreiner P, Scolari F, Siciliano P, Sim SB, Tsiamis G, Vlachos IS, Werren JH, Worley KC, Zacharopoulou A, Richards S, Handler AM, Casta?era P, Curril I, Gonz?lez-Guzm?n M, Guillem-Amat A, Hern?ndez-Crespo P, Manni M, Oberhofer G, Ortego F, Ure?a E, Wimmer EA. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol. 2016 09 22; 17(1):192. PMID: 27659211; PMCID: PMC5034548.
      Citations: 44     Fields:    Translation:HumansAnimalsPHPublic Health
    26. Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, Waterhouse RM, Ahn SJ, An C, Aqrawi P, Bretschneider A, Bryant WB, Bucks S, Chao H, Christen JM, Clarke DF, Dittmer NT, Ferguson LCF, Garavelou S, Gordon KHJ, Gunaratna RT, Han Y, Hauser F, He Y, Heidel-Fischer H, Hirsh A, Hu Y, Jiang H, Kalra D, Klinner C, Kovar C, Kroll AR, Kuwar SS, Lee SL, Li K, Li Z, Liang H, Lovelace S, Lu Z, Mansfield JH, McCulloch KJ, Mathew T, Morton B, Muzny DM, Neunemann D, Ongeri F, Pauchet Y, Pu LL, Pyrousis I, Rao XJ, Redding A, Roesel C, Schaack S, Shukla A, Tetreau G, Wang Y, Xiong GH, Traut W, Walsh TK, Worley KC, Wu D, Wu W, Wu YQ, Zhang X, Zou Z, Zucker H, Briscoe AD, Burmester T, Clem RJ, Grimmelikhuijzen CJP, Hamodrakas SJ, Hansson BS, Jermiin LS, Lan Q, Lehman HK, Lorenzen M, Merzendorfer H, Michalopoulos I, Morton DB, Muthukrishnan S, Oakeshott JG, Palmer W, Park Y, Passarelli AL, Schwartz LM, Smith W, Southgate A, Vilcinskas A, Vogt R, Wang P, Werren J, Yu XQ, Zhou JJ, Brown SJ, Scherer SE, Richards S, Blissard GW, Almeida FC, Chevignon G, K?nig C, Lehman R, Sanchez-Gracia A, Feyereisen R, Huguet E, Rozas J. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochem Mol Biol. 2016 09; 76:118-147. PMID: 27522922; PMCID: PMC5010457.
      Citations: 61     Fields:    Translation:Animals
    27. Fuller ZL, Haynes GD, Richards S, Schaeffer SW. Genomics of Natural Populations: How Differentially Expressed Genes Shape the Evolution of Chromosomal Inversions in Drosophila pseudoobscura. Genetics. 2016 09; 204(1):287-301. PMID: 27401754; PMCID: PMC5012393.
      Citations: 25     Fields:    Translation:AnimalsCells
    28. Hoy MA, Waterhouse RM, Wu K, Estep AS, Ioannidis P, Palmer WJ, Pomerantz AF, Thomas J, Jiggins FM, Murphy TD, Pritham EJ, Robertson HM, Zdobnov EM, Gibbs RA, Richards S, Sim?o FA. Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution. Genome Biol Evol. 2016 06 27; 8(6):1762-75. PMID: 26951779; PMCID: PMC4943173.
      Citations: 46     Fields:    Translation:AnimalsCellsPHPublic Health
    29. Newton IL, Clark ME, Kent BN, Bordenstein SR, Qu J, Richards S, Kelkar YD, Werren JH. Comparative Genomics of Two Closely Related Wolbachia with Different Reproductive Effects on Hosts. Genome Biol Evol. 2016 06 03; 8(5):1526-42. PMID: 27189996; PMCID: PMC4898810.
      Citations: 17     Fields:    Translation:AnimalsCells
    30. Rane RV, Walsh TK, Pearce SL, Jermiin LS, Gordon KH, Richards S, Oakeshott JG. Are feeding preferences and insecticide resistance associated with the size of detoxifying enzyme families in insect herbivores? Curr Opin Insect Sci. 2016 02; 13:70-76. PMID: 27436555.
      Citations: 21     Fields:    Translation:Animals
    31. Simakov O, Kawashima T, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, Sato A, Fujie M, Baughman KW, Levine J, Gonzalez P, Fritzenwanker JH, Pani AM, Goto H, Kanda M, Arakaki N, Yamasaki S, Qu J, Cree A, Ding Y, Dinh HH, Dugan S, Holder M, Jhangiani SN, Kovar CL, Lee SL, Lewis LR, Morton D, Nazareth LV, Okwuonu G, Santibanez J, Chen R, Richards S, Muzny DM, Gillis A, Peshkin L, Wu M, Humphreys T, Su YH, Putnam NH, Schmutz J, Fujiyama A, Yu JK, Tagawa K, Worley KC, Gibbs RA, Kirschner MW, Lowe CJ, Satoh N, Rokhsar DS, Gerhart J, Marl?taz F, Cameron C. Hemichordate genomes and deuterostome origins. Nature. 2015 Nov 26; 527(7579):459-65. PMID: 26580012; PMCID: PMC4729200.
      Citations: 76     Fields:    Translation:AnimalsCells
    32. Fehren-Schmitz L, Llamas B, Rohland N, Valverde G, Richards SM, Nordenfelt S, Seidenberg V, Mallick S, Cooper A, Reich D, Haak W, Lindauer S, Tomasto-Cagigao E, Kuzminsky S, Santos FR, Kaulicke P. A Re-Appraisal of the Early Andean Human Remains from Lauricocha in Peru. PLoS One. 2015; 10(6):e0127141. PMID: 26061688; PMCID: PMC4464891.
      Citations: 11     Fields:    Translation:Humans
    33. Ostrowski EA, Shen Y, Tian X, Sucgang R, Jiang H, Qu J, Katoh-Kurasawa M, Brock DA, Dinh C, Lara-Garduno F, Lee SL, Kovar CL, Dinh HH, Korchina V, Jackson L, Patil S, Han Y, Chaboub L, Shaulsky G, Muzny DM, Worley KC, Gibbs RA, Richards S, Kuspa A, Strassmann JE, Queller DC. Genomic signatures of cooperation and conflict in the social amoeba. Curr Biol. 2015 Jun 15; 25(12):1661-5. PMID: 26051890; PMCID: PMC4591038.
      Citations: 20     Fields:    Translation:Animals
    34. Richards S. It's more than stamp collecting: how genome sequencing can unify biological research. Trends Genet. 2015 Jul; 31(7):411-21. PMID: 26003218; PMCID: PMC4490122.
      Citations: 12     Fields:    Translation:HumansAnimals
    35. Sadd BM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Blaxter ML, Bourke AF, Brown MJ, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, Duncan E, Erler S, Evans J, Flores K, Fuchikawa T, Gempe T, Hauser F, Helbing S, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Meeus I, Moritz RF, Nair A, Nissen I, Niu J, Oakeshott JG, Osborne A, Otte M, Rueppell O, Schulte C, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Worley KC, Barribeau SM, Gadau J, C?mara F, Guig? R, Bitondi MM, Buechel SD, du Plessis L, Falcon T, Freitas FC, Hartfelder K, Humann FC, K?hler A, Antonio DS, Marxer M, N?pflin K, Nunes FM, Pinheiro DG, Rossi? N, Santos CG, Schmid-Hempel R, Schmitt BD, Sim?es ZL, Soares MP, Schmid-Hempel P. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 2015 Apr 24; 16:76. PMID: 25908251; PMCID: PMC4414376.
      Citations: 129     Fields:    Translation:AnimalsCells
    36. Chen H, Qu J, Chellapilla S, Wheeler D, Andersson MN, Bao R, Batterton M, Behura SK, Blankenburg KP, Caragea D, Carolan JC, Coyle M, El-Bouhssini M, Francisco L, Friedrich M, Gill N, Grace T, Grimmelikhuijzen CJ, Han Y, Hauser F, Herndon N, Holder M, Jackson L, Javaid M, Jhangiani SN, Johnson AJ, Kalra D, Korchina V, Kovar CL, Lara F, Lee SL, Liu X, Mata R, Mathew T, Muzny DM, Nagar S, Nazareth LV, Okwuonu G, Ongeri F, Perales L, Pu LL, Robertson HM, Schemerhorn BJ, Scherer SE, Simmons D, Subramanyam S, Thornton RL, Xue K, Weissenberger GM, Worley KC, Zhu D, Zhu Y, Harris MO, Shukle RH, Werren JH, Chen MS, Brown SJ, Richards S, Zhao C, Escalante LN, Benatti TR, Waterhouse RM, Ioannidis P, L?fstedt C, Peterson BF, Shreve JT, Williams CE, Zdobnov EM, Stuart JJ. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Curr Biol. 2015 Mar 02; 25(5):613-20. PMID: 25660540.
      Citations: 61     Fields:    Translation:AnimalsCells
    37. Richards S, Murali SC. Best Practices in Insect Genome Sequencing: What Works and What Doesn't. Curr Opin Insect Sci. 2015 Feb 01; 7:1-7. PMID: 26085980; PMCID: PMC4465116.
      Citations: 19     Fields:    
    38. Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Torres-Oliva M, Znassi N, Jiang H, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Coyle M, Dearden PK, Duncan EJ, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Han Y, Hauser F, Havlak P, Hayden L, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Saada N, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S, Schr?der R, Almeida FC, Brites D, Capella-Guti?rrez S, Du Pasquier L, Ebert D, Gabald?n T, Guig? R, Helbing S, Kraus FB, Lapraz F, Rozas J, S?nchez-Gracia A, Stolle E. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PLoS Biol. 2014 Nov; 12(11):e1002005. PMID: 25423365; PMCID: PMC4244043.
      Citations: 111     Fields:    Translation:AnimalsCells
    39. Fuller ZL, Haynes GD, Zhu D, Batterton M, Chao H, Dugan S, Javaid M, Jayaseelan JC, Lee S, Li M, Ongeri F, Qi S, Han Y, Doddapaneni H, Richards S, Schaeffer SW. Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura. G3 (Bethesda). 2014 Oct 17; 4(12):2433-49. PMID: 25326424; PMCID: PMC4267939.
      Citations: 5     Fields:    Translation:AnimalsCells
    40. Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul; 24(7):1209-23. PMID: 24985915; PMCID: PMC4079975.
      Citations: 83     Fields:    Translation:HumansAnimalsCells
    41. Huang W, Inoue Y, Peiffer J, Tarone AM, Turlapati L, Zichner T, Zhu D, Lyman RF, Magwire MM, Blankenburg K, Carbone MA, Chang K, Ellis LL, Fernandez S, Han Y, Highnam G, Hjelmen CE, Jack JR, Javaid M, Jayaseelan J, Kalra D, Lee S, Lewis L, Munidasa M, Ongeri F, Patel S, Perales L, Perez A, Pu L, Rollmann SM, Ruth R, Saada N, Warner C, Williams A, Wu YQ, Yamamoto A, Zhang Y, Zhu Y, Anholt RR, Korbel JO, Mittelman D, Muzny DM, Gibbs RA, Johnston JS, Stone EA, Richards S, Mackay TF, Massouras A, R?mia M, Barbadilla A, Deplancke B. Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines. Genome Res. 2014 Jul; 24(7):1193-208. PMID: 24714809; PMCID: PMC4079974.
      Citations: 294     Fields:    Translation:AnimalsCells
    42. Sloan DB, Nakabachi A, Richards S, Qu J, Murali SC, Gibbs RA, Moran NA. Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. Mol Biol Evol. 2014 Apr; 31(4):857-71. PMID: 24398322; PMCID: PMC3969561.
      Citations: 78     Fields:    Translation:AnimalsCells
    43. Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, Durbin R, Earl D, Emrich S, Fedotov P, Fonseca NA, Ganapathy G, Gibbs RA, Gnerre S, Goldstein S, Haimel M, Hall G, Haussler D, Hiatt JB, Ho IY, Howard J, Hunt M, Jackman SD, Jaffe DB, Jarvis ED, Jiang H, Kazakov S, Kersey PJ, Kitzman JO, Knight JR, Koren S, Lam TW, Lavenier D, Li Y, Li Z, Liu B, Liu Y, Luo R, Maccallum I, Macmanes MD, Maillet N, Melnikov S, Naquin D, Ning Z, Otto TD, Paten B, Phillippy AM, Pina-Martins F, Place M, Przybylski D, Qin X, Qu C, Ribeiro FJ, Richards S, Rokhsar DS, Ruby JG, Scalabrin S, Schatz MC, Schwartz DC, Sergushichev A, Sharpe T, Shaw TI, Shendure J, Shi Y, Simpson JT, Song H, Tsarev F, Vezzi F, Vicedomini R, Vieira BM, Wang J, Worley KC, Yin S, Yiu SM, Yuan J, Zhang G, Zhang H, Zhou S, Korf IF, Birol I, Boisvert S, Godzaridis E, Laviolette F, Paulo OS. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2013 Jul 22; 2(1):10. PMID: 23870653; PMCID: PMC3844414.
      Citations: 286     Fields:    
    44. Khajuria C, Williams CE, El Bouhssini M, Whitworth RJ, Richards S, Stuart JJ, Chen MS. Deep sequencing and genome-wide analysis reveals the expansion of MicroRNA genes in the gall midge Mayetiola destructor. BMC Genomics. 2013 Mar 18; 14:187. PMID: 23496979; PMCID: PMC3608969.
      Citations: 5     Fields:    Translation:AnimalsCellsPHPublic Health
    45. Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Der Sarkissian C, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, Luong K, Ho SYW, Quintana-Murci L, Behar DM, Alt KW, Cooper A, Genographic Consortium, Ganslmeier R, Friederich S, Dresely V, Meller H. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nat Commun. 2013; 4:1764. PMID: 23612305; PMCID: PMC3978205.
      Citations: 73     Fields:    Translation:HumansCells
    46. Streicher JW, Sekonyela R, Forlani MC, Loader SP, Greenbaum E, Richards S, de S? RO, Haddad CF. Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera. BMC Evol Biol. 2012 Dec 10; 12:241. PMID: 23228209; PMCID: PMC3561245.
      Citations: 21     Fields:    Translation:AnimalsCells
    47. English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS One. 2012; 7(11):e47768. PMID: 23185243; PMCID: PMC3504050.
      Citations: 436     Fields:    Translation:AnimalsCells
    48. Huang W, Richards S, Carbone MA, Zhu D, Anholt RR, Ayroles JF, Duncan L, Jordan KW, Lawrence F, Magwire MM, Warner CB, Blankenburg K, Han Y, Javaid M, Jayaseelan J, Jhangiani SN, Muzny D, Ongeri F, Perales L, Wu YQ, Zhang Y, Zou X, Stone EA, Gibbs RA, Mackay TF. Epistasis dominates the genetic architecture of Drosophila quantitative traits. Proc Natl Acad Sci U S A. 2012 Sep 25; 109(39):15553-9. PMID: 22949659; PMCID: PMC3465439.
      Citations: 183     Fields:    Translation:Animals
    49. Ayroles JF, Stone EA, Richards S, Zhu D, Gibbs RA, Stricker C, Gianola D, Schlather M, Mackay TF, Simianer H, Ober U. Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster. PLoS Genet. 2012; 8(5):e1002685. PMID: 22570636; PMCID: PMC3342952.
      Citations: 106     Fields:    Translation:Animals
    50. Fondon JW, Martin A, Richards S, Gibbs RA, Mittelman D. Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencing. PLoS One. 2012; 7(3):e33036. PMID: 22427938; PMCID: PMC3299726.
      Citations: 18     Fields:    Translation:AnimalsCells
    51. Werren JH, Richards S, Desjardins CA, Niehuis O, Colbourne JK, Nasonia Genome Working Group, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schmitt T, Schneider M, Schurko AM, Shuker DM, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA, Gadau J, Bitondi MM, Gr?nder S, Schl?ns H, Sch?ler A, Sim?es ZL. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science. 2010 Jan 15; 327(5963):343-8. PMID: 20075255; PMCID: PMC2849982.
      Citations: 359     Fields:    Translation:AnimalsCells
    52. Degnan PH, Leonardo TE, Cass BN, Hurwitz B, Stern D, Gibbs RA, Richards S, Moran NA. Dynamics of genome evolution in facultative symbionts of aphids. Environ Microbiol. 2010 Aug; 12(8):2060-9. PMID: 21966902; PMCID: PMC2955975.
      Citations: 41     Fields:    Translation:AnimalsCells
    53. Hampton OA, Den Hollander P, Miller CA, Delgado DA, Li J, Coarfa C, Harris RA, Richards S, Scherer SE, Muzny DM, Gibbs RA, Lee AV, Milosavljevic A. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Res. 2009 Feb; 19(2):167-77. PMID: 19056696; PMCID: PMC2652200.
      Citations: 72     Fields:    Translation:HumansCells
    54. Schaeffer SW, Bhutkar A, McAllister BF, Matsuda M, Matzkin LM, O'Grady PM, Rohde C, Valente VL, Anderson WW, Edwards K, Garcia AC, Goodman J, Hartigan J, Kataoka E, Lapoint RT, Lozovsky ER, Machado CA, Noor MA, Papaceit M, Reed LK, Richards S, Rieger TT, Russo SM, Sato H, Segarra C, Smith DR, Smith TF, Strelets V, Tobari YN, Tomimura Y, Wasserman M, Watts T, Wilson R, Yoshida K, Markow TA, Gelbart WM, Kaufman TC, Aguad? M. Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps. Genetics. 2008 Jul; 179(3):1601-55. PMID: 18622037; PMCID: PMC2475758.
      Citations: 108     Fields:    Translation:AnimalsCells
    55. Gnirke A, Margolis J, Garnes J, Campbell M, Stuart JJ, Aggarwal R, Richards S, Park Y, Beeman RW, Lorenzen MD. The maternal-effect, selfish genetic element Medea is associated with a composite Tc1 transposon. Proc Natl Acad Sci U S A. 2008 Jul 22; 105(29):10085-9. PMID: 18621706; PMCID: PMC2481321.
      Citations: 22     Fields:    Translation:AnimalsCells
    56. Tribolium Genome Sequencing Consortium, Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, Roth S, Tautz D, Zdobnov EM, Muzny D, Attaway T, Bell S, Buhay CJ, Chandrabose MN, Chavez D, Clerk-Blankenburg KP, Cree A, Dao M, Davis C, Chacko J, Dinh H, Dugan-Rocha S, Fowler G, Garner TT, Garnes J, Gnirke A, Hawes A, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Jackson L, Kovar C, Kowis A, Lee S, Lewis LR, Margolis J, Morgan M, Nazareth LV, Nguyen N, Okwuonu G, Parker D, Ruiz SJ, Santibanez J, Scherer SE, Schneider B, Sodergren E, Vattahil S, Villasana D, White CS, Wright R, Park Y, Lord J, Oppert B, Brown S, Wang L, Weinstock G, Liu Y, Worley K, Elsik CG, Reese JT, Elhaik E, Landan G, Graur D, Arensburger P, Atkinson P, Beidler J, Demuth JP, Drury DW, Du YZ, Fujiwara H, Maselli V, Osanai M, Robertson HM, Tu Z, Wang JJ, Wang S, Song H, Zhang L, Werner D, Stanke M, Morgenstern B, Solovyev V, Kosarev P, Brown G, Chen HC, Ermolaeva O, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Maglott D, Pruitt K, Sapojnikov V, Souvorov A, Mackey AJ, Waterhouse RM, Wyder S, Kriventseva EV, Kadowaki T, Bork P, Aranda M, Bao R, Beermann A, Berns N, Bolognesi R, Bopp D, Butts T, Chaumot A, Denell RE, Ferrier DE, Gordon CM, Jindra M, Lan Q, Lattorff HM, Laudet V, von Levetsow C, Liu Z, Lutz R, Lynch JA, da Fonseca RN, Posnien N, Reuter R, Schinko JB, Schmitt C, Schoppmeier M, Shippy TD, Simonnet F, Marques-Souza H, Tomoyasu Y, Trauner J, Van der Zee M, Vervoort M, Wittkopp N, Wimmer EA, Yang X, Jones AK, Sattelle DB, Ebert PR, Nelson D, Scott JG, Muthukrishnan S, Kramer KJ, Arakane Y, Zhu Q, Hogenkamp D, Dixit R, Jiang H, Zou Z, Marshall J, Elpidina E, Vinokurov K, Oppert C, Evans J, Lu Z, Zhao P, Sumathipala N, Altincicek B, Vilcinskas A, Williams M, Hultmark D, Hetru C, Hauser F, Cazzamali G, Williamson M, Li B, Tanaka Y, Predel R, Neupert S, Schachtner J, Verleyen P, Raible F, Walden KK, Angeli S, Schuetz S, Maleszka R, Miller SC, Grossmann D, Schr?der R, Savard J, Bonneton F, For?t S. The genome of the model beetle and pest Tribolium castaneum. Nature. 2008 Apr 24; 452(7190):949-55. PMID: 18362917.
      Citations: 534     Fields:    Translation:HumansAnimalsCells
    57. Park Y, Aikins J, Wang LJ, Beeman RW, Oppert B, Lord JC, Brown SJ, Richards S, Weinstock GM, Gibbs RA, Lorenzen MD. Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. Insect Biochem Mol Biol. 2008 Apr; 38(4):380-6. PMID: 18342244; PMCID: PMC2387101.
      Citations: 19     Fields:    Translation:Animals
    58. Dunning Hotopp JC, Clark ME, Oliveira DC, Foster JM, Fischer P, Giebel JD, Kumar N, Ishmael N, Wang S, Ingram J, Nene RV, Shepard J, Tomkins J, Richards S, Spiro DJ, Ghedin E, Slatko BE, Werren JH, Mu?oz Torres MC, Tettelin H. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science. 2007 Sep 21; 317(5845):1753-6. PMID: 17761848.
      Citations: 323     Fields:    Translation:AnimalsCells
    59. Tautz D, Richards S, Weinstock GM, Gibbs RA, Werren JH, Lercher MJ, Savard J, Tettelin H. Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Res. 2006 Nov; 16(11):1334-8. PMID: 17065606; PMCID: PMC1626634.
      Citations: 97     Fields:    Translation:Animals
    60. Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 2005 Aug; 15(8):1034-50. PMID: 16024819; PMCID: PMC1182216.
      Citations: 1997     Fields:    Translation:HumansAnimalsCells
    61. Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, Sudbrak R, Wen G, Jones MC, Hurles ME, Andrews TD, Scott CE, Searle S, Ramser J, Whittaker A, Deadman R, Carter NP, Hunt SE, Chen R, Cree A, Gunaratne P, Havlak P, Hodgson A, Metzker ML, Richards S, Scott G, Steffen D, Sodergren E, Wheeler DA, Worley KC, Ainscough R, Ambrose KD, Ansari-Lari MA, Aradhya S, Ashwell RI, Babbage AK, Bagguley CL, Ballabio A, Banerjee R, Barker GE, Barlow KF, Barrett IP, Bates KN, Beare DM, Beasley H, Beasley O, Beck A, Bethel G, Blechschmidt K, Brady N, Bray-Allen S, Bridgeman AM, Brown AJ, Brown MJ, Bonnin D, Bruford EA, Buhay C, Burch P, Burford D, Burgess J, Burrill W, Burton J, Bye JM, Carder C, Carrel L, Chako J, Chapman JC, Chavez D, Chen E, Chen G, Chen Y, Chen Z, Chinault C, Ciccodicola A, Clark SY, Clarke G, Clee CM, Clegg S, Clerc-Blankenburg K, Clifford K, Cobley V, Cole CG, Conquer JS, Corby N, Connor RE, David R, Davies J, Davis C, Davis J, Delgado O, Deshazo D, Dhami P, Ding Y, Dinh H, Dodsworth S, Draper H, Dugan-Rocha S, Dunham A, Dunn M, Durbin KJ, Dutta I, Eades T, Ellwood M, Emery-Cohen A, Errington H, Evans KL, Faulkner L, Francis F, Frankland J, Fraser AE, Galgoczy P, Gilbert J, Gill R, Gregory SG, Gribble S, Griffiths C, Grocock R, Gu Y, Gwilliam R, Hamilton C, Hart EA, Hawes A, Heath PD, Heitmann K, Hennig S, Hernandez J, Hinzmann B, Ho S, Hoffs M, Howden PJ, Huckle EJ, Hume J, Hunt PJ, Hunt AR, Isherwood J, Jacob L, Johnson D, Jones S, de Jong PJ, Joseph SS, Keenan S, Kelly S, Kershaw JK, Khan Z, Kioschis P, Klages S, Knights AJ, Kosiura A, Kovar-Smith C, Laird GK, Langford C, Lawlor S, Leversha M, Lewis L, Liu W, Lloyd C, Lloyd DM, Loulseged H, Loveland JE, Lovell JD, Lozado R, Lu J, Lyne R, Ma J, Maheshwari M, Matthews LH, McDowall J, McLaren S, McMurray A, Meidl P, Meitinger T, Milne S, Miner G, Mistry SL, Morgan M, Morris S, Mullikin JC, Nguyen N, Nordsiek G, Nyakatura G, O'Dell CN, Okwuonu G, Palmer S, Pandian R, Parker D, Parrish J, Pasternak S, Patel D, Pearce AV, Pearson DM, Pelan SE, Perez L, Porter KM, Ramsey Y, Reichwald K, Rhodes S, Ridler KA, Schlessinger D, Schueler MG, Sehra HK, Shaw-Smith C, Shen H, Sheridan EM, Shownkeen R, Skuce CD, Smith ML, Sotheran EC, Steingruber HE, Steward CA, Storey R, Swann RM, Swarbreck D, Tabor PE, Taudien S, Taylor T, Teague B, Thomas K, Thorpe A, Timms K, Tracey A, Trevanion S, Tromans AC, d'Urso M, Verduzco D, Villasana D, Waldron L, Wall M, Wang Q, Warren J, Warry GL, Wei X, West A, Whitehead SL, Whiteley MN, Wilkinson JE, Willey DL, Williams G, Williams L, Williamson A, Williamson H, Wilming L, Woodmansey RL, Wray PW, Yen J, Zhang J, Zhou J, Zoghbi H, Zorilla S, Buck D, Reinhardt R, Poustka A, Lehrach H, Meindl A, Minx PJ, Hillier LW, Willard HF, Wilson RK, Waterston RH, Rice CM, Vaudin M, Coulson A, Nelson DL, Weinstock G, Sulston JE, Durbin R, Hubbard T, Gibbs RA, Beck S, Rogers J, Bentley DR, Gl?ckner G, M?ller I, Rosenthal A. The DNA sequence of the human X chromosome. Nature. 2005 Mar 17; 434(7031):325-37. PMID: 15772651; PMCID: PMC2665286.
      Citations: 433     Fields:    Translation:HumansAnimalsCells
    62. Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA, Waldron L. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 2005 Jan; 15(1):1-18. PMID: 15632085; PMCID: PMC540289.
      Citations: 282     Fields:    Translation:AnimalsCells
    63. Richards S. How is the Drosophila research community making use of the genome sequence? Genome Biol. 2003; 4(5):319. PMID: 12734006; PMCID: PMC156583.
      Citations:    Fields:    Translation:Animals
    64. Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis SE, Richards S, Ashburner M, Hartenstein V, Celniker SE, Rubin GM. Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biol. 2002; 3(12):RESEARCH0088. PMID: 12537577; PMCID: PMC151190.
      Citations: 346     Fields:    Translation:Animals
    65. Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, Nelson CR, Pacleb JM, Park S, Pfeiffer BD, Richards S, Sodergren EJ, Svirskas R, Tabor PE, Wan K, Stapleton M, Sutton GG, Venter C, Weinstock G, Scherer SE, Myers EW, Gibbs RA, Rubin GM. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol. 2002; 3(12):RESEARCH0079. PMID: 12537568; PMCID: PMC151181.
      Citations: 194     Fields:    Translation:AnimalsCells
    66. Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA, Mammalian Gene Collection Program Team. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26):16899-903. PMID: 12477932; PMCID: PMC139241.
      Citations: 612     Fields:    Translation:HumansAnimals
    67. Metzker ML, Raghavachari R, Richards S, Jacutin SE, Civitello A, Burgess K, Gibbs RA. Termination of DNA synthesis by novel 3'-modified-deoxyribonucleoside 5'-triphosphates. Nucleic Acids Res. 1994 Oct 11; 22(20):4259-67. PMID: 7937154; PMCID: PMC331938.
      Citations: 22     Fields:    Translation:Cells
    68. Eichler EE, Richards S, Gibbs RA, Nelson DL. Fine structure of the human FMR1 gene. Hum Mol Genet. 1993 Aug; 2(8):1147-53. PMID: 8401496.
      Citations: 44     Fields:    Translation:HumansCells
    69. Fu YH, Friedman DL, Richards S, Pearlman JA, Gibbs RA, Pizzuti A, Ashizawa T, Perryman MB, Scarlato G, Fenwick RG, et al. Decreased expression of myotonin-protein kinase messenger RNA and protein in adult form of myotonic dystrophy. Science. 1993 Apr 09; 260(5105):235-8. PMID: 8469976.
      Citations: 68     Fields:    Translation:HumansCells
    70. Civitello AB, Richards S, Gibbs RA. A simple protocol for the automation of DNA cycle sequencing reactions and polymerase chain reactions. DNA Seq. 1992; 3(1):17-23. PMID: 1457807.
      Citations: 1     Fields:    Translation:Cells
    71. Fu YH, Kuhl DP, Pizzuti A, Pieretti M, Sutcliffe JS, Richards S, Verkerk AJ, Holden JJ, Fenwick RG, Warren ST, et al. Variation of the CGG repeat at the fragile X site results in genetic instability: resolution of the Sherman paradox. Cell. 1991 Dec 20; 67(6):1047-58. PMID: 1760838.
      Citations: 592     Fields:    Translation:HumansCells
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