ZHANDONG LIU to Software
This is a "connection" page, showing publications ZHANDONG LIU has written about Software.
Connection Strength
3.844
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A benchmark for RNA-seq deconvolution analysis under dynamic testing environments. Genome Biol. 2021 04 12; 22(1):102.
Score: 0.535
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PRIME: a probabilistic imputation method to reduce dropout effects in single-cell RNA sequencing. Bioinformatics. 2020 07 01; 36(13):4021-4029.
Score: 0.507
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A Portal to Visualize Transcriptome Profiles in Mouse Models of Neurological Disorders. Genes (Basel). 2019 09 26; 10(10).
Score: 0.481
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Using MARRVEL v1.2 for Bioinformatics Analysis of Human Genes and Variant Pathogenicity. Curr Protoc Bioinformatics. 2019 09; 67(1):e85.
Score: 0.478
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CRISPRcloud: a secure cloud-based pipeline for CRISPR pooled screen deconvolution. Bioinformatics. 2017 Sep 15; 33(18):2963-2965.
Score: 0.418
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XMRF: an R package to fit Markov Networks to high-throughput genetics data. BMC Syst Biol. 2016 08 26; 10 Suppl 3:69.
Score: 0.388
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TCGA2STAT: simple TCGA data access for integrated statistical analysis in R. Bioinformatics. 2016 03 15; 32(6):952-4.
Score: 0.368
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Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization. Bioinformatics. 2023 07 01; 39(7).
Score: 0.156
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GDASC: a GPU parallel-based web server for detecting hidden batch factors. Bioinformatics. 2020 08 15; 36(14):4211-4213.
Score: 0.128
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PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3'Seq data using vector projections and non-negative matrix factorization. Nucleic Acids Res. 2020 07 09; 48(12):e69.
Score: 0.127
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Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information. J Vis Exp. 2019 08 15; (150).
Score: 0.119
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MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. Am J Hum Genet. 2017 Jun 01; 100(6):843-853.
Score: 0.102
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Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR. Nucleic Acids Res. 2003 Jun 15; 31(12):3257-66.
Score: 0.039