InstitutionBaylor College of Medicine
DepartmentDepartment of Pathology & Immunology
AddressOne Baylor Plaza
Houston, TX 77030
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Yu Z, Ku AF, Anglin JL, Sharma R, Ucisik MN, Faver JC, Li F, Nyshadham P, Simmons N, Sharma KL, Nagarajan S, Riehle K, Kaur G, Sankaran B, Storl-Desmond M, Palmer SS, Young DW, Kim C, Matzuk MM. Discovery and characterization of bromodomain 2-specific inhibitors of BRDT. Proc Natl Acad Sci U S A. 2021 Mar 02; 118(9). PMID: 33637650.
      Citations:    Fields:    
    2. Dawadi S, Simmons N, Miklossy G, Bohren KM, Faver JC, Ucisik MN, Nyshadham P, Yu Z, Matzuk MM. Discovery of potent thrombin inhibitors from a protease-focused DNA-encoded chemical library. Proc Natl Acad Sci U S A. 2020 07 21; 117(29):16782-16789. PMID: 32641511.
      Citations: 1     Fields:    Translation:Humans
    3. Taylor DM, Anglin J, Park S, Ucisik MN, Faver JC, Simmons N, Jin Z, Palaniappan M, Nyshadham P, Li F, Campbell J, Hu L, Sankaran B, Prasad BVV, Huang H, Matzuk MM, Palzkill T. Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries. ACS Infect Dis. 2020 05 08; 6(5):1214-1227. PMID: 32182432.
      Citations: 2     Fields:    
    4. Chen YC, Faver JC, Ku AF, Miklossy G, Riehle K, Bohren KM, Ucisik MN, Matzuk MM, Yu Z, Simmons N. C-N Coupling of DNA-Conjugated (Hetero)aryl Bromides and Chlorides for DNA-Encoded Chemical Library Synthesis. Bioconjug Chem. 2020 03 18; 31(3):770-780. PMID: 32019312.
      Citations: 1     Fields:    Translation:Cells
    5. Chacón KN, Perkins J, Mathe Z, Alwan K, Ho EN, Ucisik MN, Merz KM, Blackburn NJ. Trapping intermediates in metal transfer reactions of the CusCBAF export pump of Escherichia coli. Commun Biol. 2018; 1:192. PMID: 30456313.
      Citations: 7     
    6. Ucisik MN, Hammes-Schiffer S. Effects of Active Site Mutations on Specificity of Nucleobase Binding in Human DNA Polymerase ?. J Phys Chem B. 2017 04 20; 121(15):3667-3675. PMID: 28423907.
      Citations:    Fields:    Translation:HumansCells
    7. Ucisik MN, Bevilacqua PC, Hammes-Schiffer S. Molecular Dynamics Study of Twister Ribozyme: Role of Mg(2+) Ions and the Hydrogen-Bonding Network in the Active Site. Biochemistry. 2016 07 12; 55(27):3834-46. PMID: 27295275.
      Citations: 12     Fields:    Translation:Cells
    8. Ucisik MN, Hammes-Schiffer S. Comparative Molecular Dynamics Studies of Human DNA Polymerase ?. J Chem Inf Model. 2015 Dec 28; 55(12):2672-81. PMID: 26562587.
      Citations: 4     Fields:    Translation:HumansCells
    9. Ucisik MN, Hammes-Schiffer S. Relative Binding Free Energies of Adenine and Guanine to Damaged and Undamaged DNA in Human DNA Polymerase ?: Clues for Fidelity and Overall Efficiency. J Am Chem Soc. 2015 Oct 21; 137(41):13240-3. PMID: 26434497.
      Citations: 4     Fields:    Translation:HumansCells
    10. Ucisik MN, Chakravorty DK, Merz KM. Models for the Metal Transfer Complex of the N-Terminal Region of CusB and CusF. Biochemistry. 2015 Jul 14; 54(27):4226-35. PMID: 26079272.
      Citations: 3     Fields:    Translation:Cells
    11. Minkara MS, Ucisik MN, Weaver MN, Merz KM. Molecular Dynamics Study of Helicobacter pylori Urease. J Chem Theory Comput. 2014 May 13; 10(5):1852-1862. PMID: 24839409.
      Citations: 8     Fields:    
    12. Ucisik MN, Zheng Z, Faver JC, Merz KM. Bringing Clarity to the Prediction of Protein-Ligand Binding Free Energies via "Blurring" J Chem Theory Comput. 2014 Mar 11; 10(3):1314-1325. PMID: 24803861.
      Citations: 8     Fields:    
    13. Zheng Z, Ucisik MN, Merz KM. The Movable Type Method Applied to Protein-Ligand Binding. J Chem Theory Comput. 2013 Dec 10; 9(12):5526-5538. PMID: 24535920.
      Citations: 9     Fields:    
    14. Ucisik MN, Chakravorty DK, Merz KM. Structure and dynamics of the N-terminal domain of the Cu(I) binding protein CusB. Biochemistry. 2013 Oct 01; 52(39):6911-23. PMID: 23988152.
      Citations: 10     Fields:    Translation:Cells
    15. Benson ML, Faver JC, Ucisik MN, Dashti DS, Zheng Z, Merz KM. Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores. J Comput Aided Mol Des. 2012 May; 26(5):647-59. PMID: 22476578.
      Citations: 5     Fields:    Translation:Cells
    16. Yang Y, Wang B, Ucisik MN, Cui G, Fierke CA, Merz KM. Insights into the mechanistic dichotomy of the protein farnesyltransferase peptide substrates CVIM and CVLS. J Am Chem Soc. 2012 Jan 18; 134(2):820-3. PMID: 22206225.
      Citations: 10     Fields:    Translation:Cells
    17. Chakravorty DK, Wang B, Ucisik MN, Merz KM. Insight into the cation-p interaction at the metal binding site of the copper metallochaperone CusF. J Am Chem Soc. 2011 Dec 07; 133(48):19330-3. PMID: 22029374.
      Citations: 14     Fields:    Translation:Cells
    18. Ucisik MN, Dashti DS, Faver JC, Merz KM. Pairwise additivity of energy components in protein-ligand binding: the HIV II protease-Indinavir case. J Chem Phys. 2011 Aug 28; 135(8):085101. PMID: 21895219.
      Citations: 8     Fields:    Translation:Cells
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