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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Criss ZK, Bhasin N, Di Rienzi SC, Rajan A, Deans-Fielder K, Swaminathan G, Kamyabi N, Zeng XL, Doddapaneni H, Menon VK, Chakravarti D, Estrella C, Yu X, Patil K, Petrosino JF, Fleet JC, Verzi MP, Christakos S, Helmrath MA, Arimura S, DePinho RA, Britton RA, Maresso AW, Grande-Allen KJ, Blutt SE, Crawford SE, Estes MK, Ramani S, Shroyer NF. Drivers of transcriptional variance in human intestinal epithelial organoids. Physiol Genomics. 2021 11 01; 53(11):486-508. PMID: 34612061.
      Citations: 3     Fields:    Translation:HumansCells
    2. Di Rienzi SC, Johnson EL, Waters JL, Kennedy EA, Jacobson J, Lawrence P, Wang DH, Worgall TS, Brenna JT, Ley RE. The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil. J Nutr Biochem. 2021 11; 97:108808. PMID: 34186211.
      Citations: 1     Fields:    Translation:Animals
    3. Di Rienzi SC, Britton RA. Adaptation of the Gut Microbiota to Modern Dietary Sugars and Sweeteners. Adv Nutr. 2020 05 01; 11(3):616-629. PMID: 31696209.
      Citations: 24     Fields:    Translation:Humans
    4. Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host Microbe. 2019 02 13; 25(2):261-272.e5. PMID: 30763537.
      Citations: 51     Fields:    Translation:HumansCells
    5. Di Rienzi SC, Jacobson J, Kennedy EA, Bell ME, Shi Q, Waters JL, Lawrence P, Brenna JT, Britton RA, Walter J, Ley RE. Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids. Elife. 2018 03 27; 7. PMID: 29580380.
      Citations: 6     Fields:    Translation:AnimalsCells
    6. Brewer BJ, Payen C, Di Rienzi SC, Higgins MM, Ong G, Dunham MJ, Raghuraman MK. Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification. PLoS Genet. 2015 Dec; 11(12):e1005699. PMID: 26700858.
      Citations: 18     Fields:    Translation:AnimalsCells
    7. Jin Z, Di Rienzi SC, Janzon A, Werner JJ, Angenent LT, Dangl JL, Fowler DM, Ley RE. Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay. Appl Environ Microbiol. 2016 02 15; 82(4):1050-9. PMID: 26637602.
      Citations: 4     Fields:    Translation:CellsPHPublic Health
    8. Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE. Conducting a microbiome study. Cell. 2014 Jul 17; 158(2):250-262. PMID: 25036628.
      Citations: 242     Fields:    Translation:HumansAnimalsCells
    9. Payen C, Di Rienzi SC, Ong GT, Pogachar JL, Sanchez JC, Sunshine AB, Raghuraman MK, Brewer BJ, Dunham MJ. The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection. G3 (Bethesda). 2014 Mar 20; 4(3):399-409. PMID: 24368781.
      Citations: 37     Fields:    Translation:AnimalsCells
    10. Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2013 Oct 01; 2:e01102. PMID: 24137540.
      Citations: 148     Fields:    Translation:HumansCells
    11. Di Rienzi SC, Lindstrom KC, Mann T, Noble WS, Raghuraman MK, Brewer BJ. Maintaining replication origins in the face of genomic change. Genome Res. 2012 Oct; 22(10):1940-52. PMID: 22665441.
      Citations: 21     Fields:    Translation:AnimalsCells
    12. Feng W, Di Rienzi SC, Raghuraman MK, Brewer BJ. Replication stress-induced chromosome breakage is correlated with replication fork progression and is preceded by single-stranded DNA formation. G3 (Bethesda). 2011 Oct; 1(5):327-35. PMID: 22384343.
      Citations: 34     Fields:    
    13. Di Rienzi SC, Lindstrom KC, Lancaster R, Rolczynski L, Raghuraman MK, Brewer BJ. Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii. Yeast. 2011 Feb; 28(2):137-51. PMID: 21246627.
      Citations: 11     Fields:    Translation:Animals
    14. Di Rienzi SC, Collingwood D, Raghuraman MK, Brewer BJ. Fragile genomic sites are associated with origins of replication. Genome Biol Evol. 2009 Sep 09; 1:350-63. PMID: 20333204.
      Citations: 31     Fields:    
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