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JOHN FAVER

TitleInstructor
InstitutionBaylor College of Medicine
DepartmentDepartment of Pathology & Immunology
DivisionPathology
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Taylor DM, Anglin J, Park S, Ucisik MN, Faver JC, Simmons N, Jin Z, Palaniappan M, Nyshadham P, Li F, Campbell J, Hu L, Sankaran B, Prasad BVV, Huang H, Matzuk MM, Palzkill T. Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries. ACS Infect Dis. 2020 May 08; 6(5):1214-1227. PMID: 32182432.
      View in: PubMed
    2. Chen YC, Faver JC, Ku AF, Miklossy G, Riehle K, Bohren KM, Ucisik MN, Matzuk MM, Yu Z, Simmons N. C-N Coupling of DNA-Conjugated (Hetero)aryl Bromides and Chlorides for DNA-Encoded Chemical Library Synthesis. Bioconjug Chem. 2020 Mar 18; 31(3):770-780. PMID: 32019312.
      View in: PubMed
    3. Newton AS, Faver JC, Micevic G, Muthusamy V, Kudalkar SN, Bertoletti N, Anderson KS, Bosenberg MW, Jorgensen WL. Structure-Guided Identification of DNMT3B Inhibitors. ACS Med Chem Lett. 2020 May 14; 11(5):971-976. PMID: 32435413.
      View in: PubMed
    4. Li JY, Miklossy G, Modukuri RK, Bohren KM, Yu Z, Palaniappan M, Faver JC, Riehle K, Matzuk MM, Simmons N. Palladium-Catalyzed Hydroxycarbonylation of (Hetero)aryl Halides for DNA-Encoded Chemical Library Synthesis. Bioconjug Chem. 2019 08 21; 30(8):2209-2215. PMID: 31329429.
      View in: PubMed
    5. Du HC, Simmons N, Faver JC, Yu Z, Palaniappan M, Riehle K, Matzuk MM. A Mild, DNA-Compatible Nitro Reduction Using B2(OH)4. Org Lett. 2019 04 05; 21(7):2194-2199. PMID: 30860855.
      View in: PubMed
    6. Faver JC, Riehle K, Lancia DR, Milbank JBJ, Kollmann CS, Simmons N, Yu Z, Matzuk MM. Quantitative Comparison of Enrichment from DNA-Encoded Chemical Library Selections. ACS Comb Sci. 2019 02 11; 21(2):75-82. PMID: 30672692.
      View in: PubMed
    7. Burns LA, Faver JC, Zheng Z, Marshall MS, Smith DGA, Vanommeslaeghe K, MacKerell AD, Merz KM, Sherrill CD. The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions. J Chem Phys. 2017 Oct 28; 147(16):161727. PMID: 29096505.
      View in: PubMed
    8. Cole DJ, Janecek M, Stokes JE, Rossmann M, Faver JC, McKenzie GJ, Venkitaraman AR, Hyvönen M, Spring DR, Huggins DJ, Jorgensen WL. Computationally-guided optimization of small-molecule inhibitors of the Aurora A kinase-TPX2 protein-protein interaction. Chem Commun (Camb). 2017 Aug 17; 53(67):9372-9375. PMID: 28787041.
      View in: PubMed
    9. Ucisik MN, Zheng Z, Faver JC, Merz KM. Bringing Clarity to the Prediction of Protein-Ligand Binding Free Energies via "Blurring" J Chem Theory Comput. 2014 Mar 11; 10(3):1314-1325. PMID: 24803861.
      View in: PubMed
    10. Faver JC, Ucisik MN, Yang W, Merz KM. Computer-aided Drug Design: Using Numbers to your Advantage. ACS Med Chem Lett. 2013 Sep 12; 4(9). PMID: 24312700.
      View in: PubMed
    11. Faver JC, Merz KM. Fragment-based error estimation in biomolecular modeling. Drug Discov Today. 2014 Jan; 19(1):45-50. PMID: 23993915.
      View in: PubMed
    12. Benson ML, Faver JC, Ucisik MN, Dashti DS, Zheng Z, Merz KM. Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores. J Comput Aided Mol Des. 2012 May; 26(5):647-59. PMID: 22476578.
      View in: PubMed
    13. Faver JC, Yang W, Merz KM. The Effects of Computational Modeling Errors on the Estimation of Statistical Mechanical Variables. J Chem Theory Comput. 2012 Oct 09; 8(10):3769-3776. PMID: 23413365.
      View in: PubMed
    14. Faver JC, Zheng Z, Merz KM. Statistics-based model for basis set superposition error correction in large biomolecules. Phys Chem Chem Phys. 2012 Jun 07; 14(21):7795-9. PMID: 22377839.
      View in: PubMed
    15. Faver JC, Zheng Z, Merz KM. Model for the fast estimation of basis set superposition error in biomolecular systems. J Chem Phys. 2011 Oct 14; 135(14):144110. PMID: 22010701.
      View in: PubMed
    16. Ucisik MN, Dashti DS, Faver JC, Merz KM. Pairwise additivity of energy components in protein-ligand binding: the HIV II protease-Indinavir case. J Chem Phys. 2011 Aug 28; 135(8):085101. PMID: 21895219.
      View in: PubMed
    17. Faver JC, Benson ML, He X, Roberts BP, Wang B, Marshall MS, Sherrill CD, Merz KM. The energy computation paradox and ab initio protein folding. PLoS One. 2011 Apr 25; 6(4):e18868. PMID: 21541343.
      View in: PubMed
    18. Faver JC, Benson ML, He X, Roberts BP, Wang B, Marshall MS, Kennedy MR, Sherrill CD, Merz KM. Formal Estimation of Errors in Computed Absolute Interaction Energies of Protein-ligand Complexes. J Chem Theory Comput. 2011 Mar 08; 7(3):790-797. PMID: 21666841.
      View in: PubMed
    19. Faver J, Merz KM. The Utility of the HSAB Principle via the Fukui Function in Biological Systems. J Chem Theory Comput. 2010 Feb 09; 6(2):548-559. PMID: 20369029.
      View in: PubMed
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