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TitlePostdoc Fellows and Associates
InstitutionBaylor College of Medicine
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    2015Microbiome Award, Baylor College of Medicine

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Stewart CJ, Embleton ND, Marrs ECL, Smith DP, Fofanova T, Nelson A, Skeath T, Perry JD, Petrosino JF, Berrington JE, Cummings SP. Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls. Microbiome. 2017 Jul 12; 5(1):75. PMID: 28701177.
      View in: PubMed
    2. Stewart CJ, Embleton ND, Clements E, Luna PN, Smith DP, Fofanova TY, Nelson A, Taylor G, Orr CH, Petrosino JF, Berrington JE, Cummings SP. Cesarean or Vaginal Birth Does Not Impact the Longitudinal Development of the Gut Microbiome in a Cohort of Exclusively Preterm Infants. Front Microbiol. 2017; 8:1008. PMID: 28634475.
      View in: PubMed
    3. Stewart CJ, Mansbach JM, Wong MC, Ajami NJ, Petrosino JF, Camargo CA, Hasegawa K. Associations of Nasopharyngeal Metabolome and Microbiome with Severity Among Infants with Bronchiolitis: A Multi-omic Analysis. Am J Respir Crit Care Med. 2017 May 21. PMID: 28530140.
      View in: PubMed
    4. Embleton ND, Berrington JE, Dorling J, Ewer AK, Juszczak E, Kirby JA, Lamb CA, Lanyon CV, McGuire W, Probert CS, Rushton SP, Shirley MD, Stewart CJ, Cummings SP. Mechanisms Affecting the Gut of Preterm Infants in Enteral Feeding Trials. Front Nutr. 2017; 4:14. PMID: 28534028.
      View in: PubMed
    5. O'Neil DS, Stewart CJ, Chu DM, Goodspeed DM, Gonzalez-Rodriguez PJ, Shope CD, Aagaard KM. Conditional Postnatal Deletion of the Neonatal Murine Hepatic Circadian Gene, Npas2, Alters the Gut Microbiome Following Restricted Feeding. Am J Obstet Gynecol. 2017 Mar 31. PMID: 28373017.
      View in: PubMed
    6. Stewart CJ, Embleton ND, Marrs EC, Smith DP, Nelson A, Abdulkadir B, Skeath T, Petrosino JF, Perry JD, Berrington JE, Cummings SP. Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease. Microbiome. 2016 Dec 29; 4(1):67. PMID: 28034304.
      View in: PubMed
    7. Aagaard K, Stewart CJ, Chu D. Una destinatio, viae diversae: Does exposure to the vaginal microbiota confer health benefits to the infant, and does lack of exposure confer disease risk? EMBO Rep. 2016 Dec; 17(12):1679-1684. PMID: 27884820.
      View in: PubMed
    8. Al-Momani H, Perry A, Stewart CJ, Jones R, Krishnan A, Robertson AG, Bourke S, Doe S, Cummings SP, Anderson A, Forrest T, Griffin SM, Brodlie M, Pearson J, Ward C. Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients. Sci Rep. 2016 Jun 01; 6:26985. PMID: 27245316; PMCID: PMC4887896.
    9. Stewart CJ, Nelson A, Campbell MD, Walker M, Stevenson EJ, Shaw JA, Cummings SP, West DJ. Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study. Diabet Med. 2017 Jan; 34(1):127-134. PMID: 27100052.
      View in: PubMed
    10. Lane JP, Stewart CJ, Cummings SP, Gennery AR. Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency. J Allergy Clin Immunol. 2016 Aug; 138(2):622-625.e3. PMID: 27118218.
      View in: PubMed
    11. Houghton D, Stewart CJ, Day CP, Trenell M. Gut Microbiota and Lifestyle Interventions in NAFLD. Int J Mol Sci. 2016 Mar 25; 17(4):447. PMID: 27023533; PMCID: PMC4848903.
    12. Abdulkadir B, Nelson A, Skeath T, Marrs EC, Perry JD, Cummings SP, Embleton ND, Berrington JE, Stewart CJ. Stool bacterial load in preterm infants with necrotising enterocolitis. Early Hum Dev. 2016 Apr; 95:1-2. PMID: 26895407.
      View in: PubMed
    13. Abdulkadir B, Nelson A, Skeath T, Marrs EC, Perry JD, Cummings SP, Embleton ND, Berrington JE, Stewart CJ. Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome. Neonatology. 2016; 109(4):239-47. PMID: 26859305.
      View in: PubMed
    14. Stewart CJ, Skeath T, Nelson A, Fernstad SJ, Marrs EC, Perry JD, Cummings SP, Berrington JE, Embleton ND. Preterm gut microbiota and metabolome following discharge from intensive care. Sci Rep. 2015 Nov 24; 5:17141. PMID: 26598071; PMCID: PMC4657104.
    15. Stewart CJ, Nelson A, Treumann A, Skeath T, Cummings SP, Embleton ND, Berrington JE. Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis. Pediatr Res. 2016 Mar; 79(3):425-31. PMID: 26571220; PMCID: PMC4823643.
    16. Orr CH, Stewart CJ, Leifert C, Cooper JM, Cummings SP. Effect of crop management and sample year on abundance of soil bacterial communities in organic and conventional cropping systems. J Appl Microbiol. 2015 Jul; 119(1):208-14. PMID: 25866080.
      View in: PubMed
    17. Lane JP, Stewart CJ, Cummings SP, Gennery AR. Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency. J Allergy Clin Immunol. 2015 Jun; 135(6):1654-6. PMID: 25769913.
      View in: PubMed
    18. Berrington JE, Stewart CJ, Cummings SP, Embleton ND. The neonatal bowel microbiome in health and infection. Curr Opin Infect Dis. 2014 Jun; 27(3):236-43. PMID: 24751892.
      View in: PubMed
    19. Purcell P, Jary H, Perry A, Perry JD, Stewart CJ, Nelson A, Lanyon C, Smith DL, Cummings SP, De Soyza A. Polymicrobial airway bacterial communities in adult bronchiectasis patients. BMC Microbiol. 2014 May 20; 14:130. PMID: 24886473; PMCID: PMC4031157.
    20. Berrington JE, Hearn RI, Hall C, Stewart CJ, Cummings SP, Embleton ND. Proportionate reduction in uncertainty of late onset infection in pre-term infants by neutrophil CD64 measurement. Fetal Pediatr Pathol. 2014 Feb; 33(1):16-22. PMID: 24093544.
      View in: PubMed
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