TitleAssociate Professor
InstitutionMD Anderson
Address7777 Knight Rd
Houston TX 77054-3005
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Singh A, Cheng D, Swaminathan J, Yang Y, Zheng Y, Gordon N, Gopalakrishnan V. REST-dependent downregulation of von Hippel-Lindau tumor suppressor promotes autophagy in SHH-medulloblastoma. Sci Rep. 2024 06 12; 14(1):13596. PMID: 38866867; PMCID: PMC11169471.
      Citations:    Fields:    Translation:HumansAnimalsCells
    2. Truong DD, Weistuch C, Murgas KA, Admane P, King BL, Chauviere Lee J, Lamhamedi-Cherradi SE, Swaminathan J, Daw NC, Gordon N, Gopalakrishnan V, Gorlick RG, Somaiah N, Deasy JO, Mikos AG, Tannenbaum A, Ludwig J. Mapping the Single-cell Differentiation Landscape of Osteosarcoma. Clin Cancer Res. 2024 May 22. PMID: 38775859.
      Citations:    Fields:    
    3. Rav E, Maegawa S, Gopalakrishnan V, Gordon N. Overview of CD70 as a Potential Therapeutic Target for Osteosarcoma. J Immunol. 2023 10 01; 211(7):1067-1072. PMID: 37722095.
      Citations:    Fields:    Translation:Humans
    4. Truong DD, Lamhamedi-Cherradi SE, Porter RW, Krishnan S, Swaminathan J, Gibson A, Lazar AJ, Livingston JA, Gopalakrishnan V, Gordon N, Daw NC, Navin NE, Gorlick R, Ludwig JA. Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing. BMC Cancer. 2023 May 31; 23(1):488. PMID: 37254069; PMCID: PMC10230784.
      Citations: 1     Fields:    Translation:HumansCells
    5. Lee J, Savage H, Maegawa S, Ballar? R, Pareek S, Guerrouahen BS, Gopalakrishnan V, Schadler K. Exercise Promotes Pro-Apoptotic Ceramide Signaling in a Mouse Melanoma Model. Cancers (Basel). 2022 Sep 02; 14(17). PMID: 36077841; PMCID: PMC9454537.
    6. Swaminathan J, Maegawa S, Shaik S, Sharma A, Bravo-Alegria J, Guo L, Xu L, Harmanci A, Gopalakrishnan V. Cross-Talk Between Histone Methyltransferases and Demethylases Regulate REST Transcription During Neurogenesis. Front Oncol. 2022; 12:855167. PMID: 35600406; PMCID: PMC9120943.
    7. Maegawa S, Gopalakrishnan V. PLK inhibitors come of age in pediatric brain tumors. Neuro Oncol. 2022 03 12; 24(3):427-428. PMID: 35015893; PMCID: PMC8917393.
      Citations:    Fields:    Translation:Humans
    8. Siddaway R, Milos S, Vadivel AKA, Dobson THW, Swaminathan J, Ryall S, Pajovic S, Patel PG, Nazarian J, Becher O, Brudno M, Ramani A, Gopalakrishnan V, Hawkins C. Splicing is an alternate oncogenic pathway activation mechanism in glioma. Nat Commun. 2022 01 31; 13(1):588. PMID: 35102191; PMCID: PMC8803922.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    9. Shaik S, Maegawa S, Gopalakrishnan V. Medulloblastoma: novel insights into emerging therapeutic targets. Expert Opin Ther Targets. 2021 08; 25(8):615-619. PMID: 34602009; PMCID: PMC8552961.
      Citations:    Fields:    Translation:Humans
    10. Gopalakrishnan V, Sharma S, Ray U, Manjunath M, Lakshmanan D, Vartak SV, Gopinatha VK, Srivastava M, Kempegowda M, Choudhary B, Raghavan SC. SCR7, an inhibitor of NHEJ can sensitize tumor cells to ionization radiation. Mol Carcinog. 2021 09; 60(9):627-643. PMID: 34192388.
      Citations:    Fields:    Translation:HumansAnimalsCells
    11. Shi Y, Shen HM, Gopalakrishnan V, Gordon N. Epigenetic Regulation of Autophagy Beyond the Cytoplasm: A Review. Front Cell Dev Biol. 2021; 9:675599. PMID: 34195194; PMCID: PMC8237754.
      Citations: 1     
    12. Shaik S, Maegawa S, Haltom AR, Wang F, Xiao X, Dobson T, Sharma A, Yang Y, Swaminathan J, Kundra V, Li XN, Schadler K, Harmanci A, Xu L, Gopalakrishnan V. REST promotes ETS1-dependent vascular growth in medulloblastoma. Mol Oncol. 2021 05; 15(5):1486-1506. PMID: 33469989; PMCID: PMC8096796.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    13. Gong S, Maegawa S, Yang Y, Gopalakrishnan V, Zheng G, Cheng D. Licochalcone A is a Natural Selective?Inhibitor of Arginine Methyltransferase 6. Biochem J. 2020 Nov 27. PMID: 33245113; PMCID: PMC7850898.
      Citations: 2     Fields:    
    14. Hennessy M, Wahba A, Felix K, Cabrera M, Segura MG, Kundra V, Ravoori MK, Stewart J, Kleinerman ES, Jensen VB, Gopalakrishnan V, Pena R, Quach P, Kim G, Madakamutil L, Overwijk WW, Zalevsky J, Gordon N, Kivim?e S. Bempegaldesleukin (BEMPEG; NKTR-214) efficacy as a single agent and in combination with checkpoint-inhibitor therapy in mouse models of osteosarcoma. Int J Cancer. 2021 04 15; 148(8):1928-1937. PMID: 33152115; PMCID: PMC7984260.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    15. Bailey CP, Figueroa M, Gangadharan A, Yang Y, Romero MM, Kennis BA, Yadavilli S, Henry V, Collier T, Monje M, Lee DA, Wang L, Nazarian J, Gopalakrishnan V, Zaky W, Becher OJ, Chandra J. Pharmacologic inhibition of lysine-specific demethylase 1 as a therapeutic and immune-sensitization strategy in pediatric high-grade glioma. Neuro Oncol. 2020 09 29; 22(9):1302-1314. PMID: 32166329; PMCID: PMC7523459.
      Citations: 15     Fields:    Translation:HumansAnimals
    16. Haltom AR, Toll SA, Cheng D, Maegawa S, Gopalakrishnan V, Khatua S. Medulloblastoma epigenetics and the path to clinical innovation. J Neurooncol. 2020 Oct; 150(1):35-46. PMID: 32816225; PMCID: PMC8939889.
      Citations: 1     Fields:    Translation:HumansCells
    17. Khatua S, Cooper LJN, Sandberg DI, Ketonen L, Johnson JM, Rytting ME, Liu DD, Meador H, Trikha P, Nakkula RJ, Behbehani GK, Ragoonanan D, Gupta S, Kotrotsou A, Idris T, Shpall EJ, Rezvani K, Colen R, Zaky W, Lee DA, Gopalakrishnan V. Phase I study of intraventricular infusions of autologous ex vivo expanded NK cells in children with recurrent medulloblastoma and ependymoma. Neuro Oncol. 2020 08 17; 22(8):1214-1225. PMID: 32152626; PMCID: PMC7594549.
      Citations: 15     Fields:    Translation:HumansCellsCTClinical Trials
    18. Harmanci A, Harmanci AS, Swaminathan J, Gopalakrishnan V. EpiSAFARI: sensitive detection of valleys in epigenetic signals for enhancing annotations of functional elements. Bioinformatics. 2020 02 15; 36(4):1014-1021. PMID: 31501853; PMCID: PMC7703766.
      Citations:    Fields:    Translation:Cells
    19. Kennis BA, Michel KA, Brugmann WB, Laureano A, Tao RH, Somanchi SS, Einstein SA, Bravo-Alegria JB, Maegawa S, Wahba A, Kiany S, Gordon N, Silla L, Schellingerhout D, Khatua S, Zaky W, Sandberg D, Cooper L, Lee DA, Bankson JA, Gopalakrishnan V. Correction to: Monitoring of intracerebellarly-administered natural killer cells with fluorine-19 MRI. J Neurooncol. 2019 May; 142(3):409. PMID: 30968268.
      Citations:    Fields:    
    20. Currier AW, Kolb EA, Gorlick RG, Roth ME, Gopalakrishnan V, Sampson VB. p27/Kip1 functions as a tumor suppressor and oncoprotein in osteosarcoma. Sci Rep. 2019 04 16; 9(1):6161. PMID: 30992462; PMCID: PMC6467888.
      Citations: 7     Fields:    Translation:HumansCells
    21. Kennis BA, Michel KA, Brugmann WB, Laureano A, Tao RH, Somanchi SS, Einstein SA, Bravo-Alegria JB, Maegawa S, Wahba A, Kiany S, Gordon N, Silla L, Schellingerhout D, Khatua S, Zaky W, Sandberg D, Cooper L, Lee DA, Bankson JA, Gopalakrishnan V. Monitoring of intracerebellarly-administered natural killer cells with fluorine-19 MRI. J Neurooncol. 2019 May; 142(3):395-407. PMID: 30788681.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    22. Dobson THW, Tao RH, Swaminathan J, Maegawa S, Shaik S, Bravo-Alegria J, Sharma A, Kennis B, Yang Y, Callegari K, Haltom AR, Taylor P, Kogiso M, Qi L, Khatua S, Goldman S, Lulla RR, Fangusaro J, MacDonald TJ, Li XN, Hawkins C, Rajaram V, Gopalakrishnan V. Transcriptional repressor REST drives lineage stage-specific chromatin compaction at Ptch1 and increases AKT activation in a mouse model of medulloblastoma. Sci Signal. 2019 01 22; 12(565). PMID: 30670636; PMCID: PMC8939892.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    23. Dobson THW, Gopalakrishnan V. Preclinical Models of Pediatric Brain Tumors-Forging Ahead. Bioengineering (Basel). 2018 Oct 02; 5(4). PMID: 30279402; PMCID: PMC6315787.
      Citations: 6     
    24. Callegari K, Maegawa S, Bravo-Alegria J, Gopalakrishnan V. Pharmacological inhibition of LSD1 activity blocks REST-dependent medulloblastoma cell migration. Cell Commun Signal. 2018 09 18; 16(1):60. PMID: 30227871; PMCID: PMC6145331.
      Citations: 12     Fields:    Translation:HumansCells
    25. Dhar SS, Zhao D, Lin T, Gu B, Pal K, Wu SJ, Alam H, Lv J, Yun K, Gopalakrishnan V, Flores ER, Northcott PA, Rajaram V, Li W, Shilatifard A, Sillitoe RV, Chen K, Lee MG. MLL4 Is Required to Maintain Broad H3K4me3 Peaks and Super-Enhancers at Tumor Suppressor Genes. Mol Cell. 2018 06 07; 70(5):825-841.e6. PMID: 29861161; PMCID: PMC6528658.
      Citations: 55     Fields:    Translation:AnimalsCells
    26. Shaik S, Kennis B, Maegawa S, Schadler K, Yanwen Y, Callegari K, Lulla RR, Goldman S, Nazarian J, Rajaram V, Fangusaro J, Gopalakrishnan V. REST upregulates gremlin to modulate diffuse intrinsic pontine glioma vasculature. Oncotarget. 2018 Jan 12; 9(4):5233-5250. PMID: 29435175; PMCID: PMC5797046.
      Citations: 7     Fields:    
    27. Zaky W, Manton C, Miller CP, Khatua S, Gopalakrishnan V, Chandra J. The ubiquitin-proteasome pathway in adult and pediatric brain tumors: biological insights and therapeutic opportunities. Cancer Metastasis Rev. 2017 12; 36(4):617-633. PMID: 29071526.
      Citations: 4     Fields:    Translation:HumansAnimals
    28. Nolo R, Herbrich S, Rao A, Zweidler-McKay P, Kannan S, Gopalakrishnan V. Targeting P-selectin blocks neuroblastoma growth. Oncotarget. 2017 Oct 17; 8(49):86657-86670. PMID: 29156825; PMCID: PMC5689715.
      Citations: 8     Fields:    
    29. Hegde M, Vartak SV, Kavitha CV, Ananda H, Prasanna DS, Gopalakrishnan V, Choudhary B, Rangappa KS, Raghavan SC. A Benzothiazole Derivative (5g) Induces DNA Damage And Potent G2/M Arrest In Cancer Cells. Sci Rep. 2017 05 31; 7(1):2533. PMID: 28566733; PMCID: PMC5451441.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    30. Dobson THW, Hatcher RJ, Swaminathan J, Das CM, Shaik S, Tao RH, Taylor PH, Gopalakrishnan V, Milite C, Castellano S, Sbardella G. Regulation of USP37 Expression by REST-Associated G9a-Dependent Histone Methylation. Mol Cancer Res. 2017 08; 15(8):1073-1084. PMID: 28483947; PMCID: PMC5540785.
      Citations: 22     Fields:    Translation:HumansAnimalsCells
    31. Thomas E, Gopalakrishnan V, Hegde M, Kumar S, Karki SS, Raghavan SC, Choudhary B. A Novel Resveratrol Based Tubulin Inhibitor Induces Mitotic Arrest and Activates Apoptosis in Cancer Cells. Sci Rep. 2016 10 17; 6:34653. PMID: 27748367; PMCID: PMC5066224.
      Citations: 16     Fields:    Translation:HumansAnimalsCells
    32. Iyer D, Vartak SV, Mishra A, Goldsmith G, Kumar S, Srivastava M, Hegde M, Gopalakrishnan V, Glenn M, Velusamy M, Choudhary B, Kalakonda N, Karki SS, Surolia A, Raghavan SC. Identification of a novel BCL2-specific inhibitor that binds predominantly to the BH1 domain. FEBS J. 2016 09; 283(18):3408-37. PMID: 27444341.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    33. Somanchi SS, Kennis BA, Gopalakrishnan V, Lee DA, Bankson JA. In Vivo (19)F-Magnetic Resonance Imaging of Adoptively Transferred NK Cells. Methods Mol Biol. 2016; 1441:317-32. PMID: 27177678.
      Citations: 12     Fields:    Translation:HumansAnimalsCells
    34. Sandberg DI, Rytting M, Zaky W, Kerr M, Ketonen L, Kundu U, Moore BD, Yang G, Hou P, Sitton C, Cooper LJ, Gopalakrishnan V, Lee DA, Thall PF, Khatua S. Methotrexate administration directly into the fourth ventricle in children with malignant fourth ventricular brain tumors: a pilot clinical trial. J Neurooncol. 2015 Oct; 125(1):133-41. PMID: 26255071; PMCID: PMC4592494.
      Citations: 9     Fields:    Translation:Humans
    35. Gopalakrishnan V, Tao RH, Dobson T, Brugmann W, Khatua S. Medulloblastoma development: tumor biology informs treatment decisions. CNS Oncol. 2015; 4(2):79-89. PMID: 25768332; PMCID: PMC4408195.
      Citations: 6     Fields:    Translation:HumansAnimals
    36. Kumar S, Hegde M, Gopalakrishnan V, Renuka VK, Ramareddy SA, De Clercq E, Schols D, Gudibabande Narasimhamurthy AK, Raghavan SC, Karki SS. 2-(4-Chlorobenzyl)-6-arylimidazo[2,1-b][1,3,4]thiadiazoles: synthesis, cytotoxic activity and mechanism of action. Eur J Med Chem. 2014 Sep 12; 84:687-97. PMID: 25064346.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    37. Nambiar M, Srivastava M, Gopalakrishnan V, Sankaran SK, Raghavan SC. G-quadruplex structures formed at the HOX11 breakpoint region contribute to its fragility during t(10;14) translocation in T-cell leukemia. Mol Cell Biol. 2013 Nov; 33(21):4266-81. PMID: 24001773; PMCID: PMC3811900.
      Citations: 21     Fields:    Translation:HumansCells
    38. Taylor P, Fangusaro J, Rajaram V, Goldman S, Helenowski IB, MacDonald T, Hasselblatt M, Riedemann L, Laureano A, Cooper L, Gopalakrishnan V. REST is a novel prognostic factor and therapeutic target for medulloblastoma. Mol Cancer Ther. 2012 Aug; 11(8):1713-1723. PMID: 22848092; PMCID: PMC3763747.
      Citations: 31     Fields:    Translation:HumansCells
    39. Das CM, Taylor P, Gireud M, Singh A, Lee D, Fuller G, Ji L, Fangusaro J, Rajaram V, Goldman S, Eberhart C, Gopalakrishnan V. The deubiquitylase USP37 links REST to the control of p27 stability and cell proliferation. Oncogene. 2013 Mar 28; 32(13):1691-701. PMID: 22665064; PMCID: PMC3435483.
      Citations: 23     Fields:    Translation:HumansAnimalsCells
    40. Singh A, Rokes C, Gireud M, Fletcher S, Baumgartner J, Fuller G, Stewart J, Zage P, Gopalakrishnan V. Retinoic acid induces REST degradation and neuronal differentiation by modulating the expression of SCF(?-TRCP) in neuroblastoma cells. Cancer. 2011 Nov 15; 117(22):5189-202. PMID: 21523764.
      Citations: 25     Fields:    Translation:HumansCells
    41. Schreck KC, Taylor P, Marchionni L, Gopalakrishnan V, Bar EE, Gaiano N, Eberhart CG. The Notch target Hes1 directly modulates Gli1 expression and Hedgehog signaling: a potential mechanism of therapeutic resistance. Clin Cancer Res. 2010 Dec 15; 16(24):6060-70. PMID: 21169257; PMCID: PMC3059501.
      Citations: 89     Fields:    Translation:HumansCells
    42. Zage PE, Taylor P, Aguilera D, Wolff JE, Lee D, Gopalakrishnan V, Das CM. Chromatin remodelling at the topoisomerase II-beta promoter is associated with enhanced sensitivity to etoposide in human neuroblastoma cell lines. Eur J Cancer. 2010 Oct; 46(15):2771-80. PMID: 20886683; PMCID: PMC3025305.
      Citations: 6     Fields:    Translation:HumansCells
    43. Gopalakrishnan V, Bie B, Sinnappah-Kang ND, Adams H, Fuller GN, Pan ZZ, Majumder S. Myoblast-derived neuronal cells form glutamatergic neurons in the mouse cerebellum. Stem Cells. 2010 Oct; 28(10):1839-47. PMID: 20799335; PMCID: PMC3063457.
      Citations: 4     Fields:    Translation:AnimalsCells
    44. Aguilera DG, Das CM, Sinnappah-Kang ND, Joyce C, Taylor PH, Wen S, Hasselblatt M, Paulus W, Fuller G, Wolff JE, Gopalakrishnan V. Reactivation of death receptor 4 (DR4) expression sensitizes medulloblastoma cell lines to TRAIL. J Neurooncol. 2009 Jul; 93(3):303-18. PMID: 19148581; PMCID: PMC3820292.
      Citations: 20     Fields:    Translation:HumansCells
    45. Gopalakrishnan V. REST and the RESTless: in stem cells and beyond. Future Neurol. 2009; 4(3):317-329. PMID: 19885378; PMCID: PMC2719900.
      Citations: 34     
    46. Prasad P, Vasquez H, Das CM, Gopalakrishnan V, Wolff JE. Histone acetylation resulting in resistance to methotrexate in choroid plexus cells. J Neurooncol. 2009 Feb; 91(3):279-86. PMID: 18853233.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    47. Masoudi A, Elopre M, Amini E, Nagel ME, Ater JL, Gopalakrishnan V, Wolff JE. Influence of valproic acid on outcome of high-grade gliomas in children. Anticancer Res. 2008 Jul-Aug; 28(4C):2437-42. PMID: 18751431.
      Citations: 31     Fields:    Translation:Humans
    48. Das CM, Aguilera D, Vasquez H, Prasad P, Zhang M, Wolff JE, Gopalakrishnan V. Valproic acid induces p21 and topoisomerase-II (alpha/beta) expression and synergistically enhances etoposide cytotoxicity in human glioblastoma cell lines. J Neurooncol. 2007 Nov; 85(2):159-70. PMID: 17534580.
      Citations: 48     Fields:    Translation:HumansCells
    49. Zhang M, Aguilera D, Das C, Vasquez H, Zage P, Gopalakrishnan V, Wolff J. Measuring cytotoxicity: a new perspective on LC50. Anticancer Res. 2007 Jan-Feb; 27(1A):35-8. PMID: 17352213.
      Citations: 8     Fields:    Translation:HumansCells
    50. Zhang M, Das C, Vasquez H, Aguilera D, Zage PE, Gopalakrishnan V, Wolff JE. Predicting tumor cell repopulation after response: mathematical modeling of cancer cell growth. Anticancer Res. 2006 Jul-Aug; 26(4B):2933-6. PMID: 16886616.
      Citations: 4     Fields:    Translation:Humans
    51. Su X, Gopalakrishnan V, Stearns D, Aldape K, Lang FF, Fuller G, Snyder E, Eberhart CG, Majumder S. Abnormal expression of REST/NRSF and Myc in neural stem/progenitor cells causes cerebellar tumors by blocking neuronal differentiation. Mol Cell Biol. 2006 Mar; 26(5):1666-78. PMID: 16478988; PMCID: PMC1430235.
      Citations: 76     Fields:    Translation:HumansAnimalsCells
    52. Watanabe Y, Kameoka S, Gopalakrishnan V, Aldape KD, Pan ZZ, Lang FF, Majumder S. Conversion of myoblasts to physiologically active neuronal phenotype. Genes Dev. 2004 Apr 15; 18(8):889-900. PMID: 15078815; PMCID: PMC395848.
      Citations: 29     Fields:    Translation:AnimalsCells
    53. Gopalakrishnan V, Simancek P, Houchens C, Snaith HA, Frattini MG, Sazer S, Kelly TJ. Redundant control of rereplication in fission yeast. Proc Natl Acad Sci U S A. 2001 Nov 06; 98(23):13114-9. PMID: 11606752; PMCID: PMC60833.
      Citations: 27     Fields:    Translation:AnimalsCells
    54. Gopalakrishnan V, Sheahan L, Khan SA. DNA replication specificity and functional E2 interaction of the E1 proteins of human papillomavirus types 1a and 18 are determined by their carboxyl-terminal halves. Virology. 1999 Apr 10; 256(2):330-9. PMID: 10191198.
      Citations: 4     Fields:    Translation:HumansCells
    55. Khan SA, Sheikh S, Sheahan L, Van Horn G, Gopalakrishnan V, Sverdrup F. Expression of E1 protein of human papillomaviruses in eukaryotic cells. Methods Enzymol. 1999; 306:328-36. PMID: 10432463.
      Citations:    Fields:    Translation:HumansAnimalsCells
    56. Gopalakrishnan V, Walker S, Khan SA. Stimulation of human papillomavirus type 1a DNA replication by a multimerized AT-rich palindromic sequence. Virology. 1995 Dec 01; 214(1):301-6. PMID: 8525634.
      Citations:    Fields:    Translation:HumansCells
    57. Gopalakrishnan V, Khan SA. E1 protein of human papillomavirus type 1a is sufficient for initiation of viral DNA replication. Proc Natl Acad Sci U S A. 1994 Sep 27; 91(20):9597-601. PMID: 7937813; PMCID: PMC44860.
      Citations: 30     Fields:    Translation:HumansCells
    58. The deubiquitylase USP37 links REST to the control of p27 stability and cell proliferation. Oncogene.
    59. In vivo 19F-magnetic resonance imaging of adoptively transferred NK cells. 317-332.
    60. Rest and the restless. Future Neurology. 4:317-329.
    61. Methotrexate administration directly into the fourth ventricle in children with malignant fourth ventricular brain tumors. Journal of Neuro-Oncology. 125:133-141.
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