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SAMIR HANASH

TitleProfessor
InstitutionMD Anderson
DepartmentClinical Cancer Prevention
Address6767 Bertner St
Houston TX 77030-2603
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Ghasemi SM, Gu C, Fahrmann JF, Hanash S, Do KA, Long JP, Irajizad E. A Novel Sensitivity Maximization at a Given Specificity Method for Binary Classifications. Cancer Prev Res (Phila). 2024 Dec 02. PMID: 39618306.
      Citations:    Fields:    
    2. Gregg JR, Newcomb L, Wu R, Dennison J, Davis JW, Pettaway C, Pisters L, Ward JF, Chapin BF, Ch?ry L, Urkmez A, Fang AM, Higgason N, Troncoso P, Daniel CR, Logothetis C, Thompson TC, Hahn AW, Liu M, Zheng Y, Lin DW, Hanash S, Irajizad E, Fahrmann J. Validation of a prognostic blood-based sphingolipid panel for men with localized prostate cancer followed on active surveillance. Biomark Res. 2024 Nov 09; 12(1):134. PMID: 39522029; PMCID: PMC11550521.
      Citations:    
    3. Khorami-Sarvestani S, Hanash SM, Fahrmann JF, Le?n-Letelier RA, Katayama H, Khorami-Sarvestani S, Hanash SM, Fahrmann JF, Le?n-Letelier RA, Katayama H. Glycosylation in cancer as a source of biomarkers. Expert Rev Proteomics. 2024 Sep-Oct; 21(9-10):345-365. PMID: 39376081.
      Citations:    Fields:    Translation:HumansAnimalsCells
    4. Prasad R, Rehman A, Rehman L, Darbaniyan F, Blumenberg V, Schubert ML, Mor U, Zamir E, Schmidt S, Hayase T, Chia-Chi C, McDaniel LK, Flores I, Strati P, Nair R, Chihara D, Fayad LE, Ahmed S, Iyer SP, Wang ML, Jain P, Nastoupil LJ, Westin JR, Arora R, Turner JG, Khawaja F, Wu R, Dennison JB, Menges M, Hidalgo-Vargas M, Reid KM, Davila ML, Dreger P, Korell F, Schmitt A, Tanner MR, Champlin RE, Flowers CR, Shpall EJ, Hanash S, Neelapu SS, Schmitt M, Subklewe M, Fahrmann J, Stein-Thoeringer C, Elinav E, Jain MD, Hayase E, Jenq RR, Saini NY. Antibiotic-induced loss of gut microbiome metabolic output correlates with clinical responses to CAR T-cell therapy. Blood. 2024 Oct 23. PMID: 39441941.
      Citations:    Fields:    
    5. Irajizad E, Fahrmann JF, Toumazis I, Vykoukal J, Dennison JB, Shen Y, Do KA, Ostrin EJ, Feng Z, Hanash S. Biomarker trajectory for earlier detection of lung cancer. EBioMedicine. 2024 Oct; 108:105377. PMID: 39353277; PMCID: PMC11472629.
      Citations:    Fields:    Translation:Humans
    6. Haab B, Qian L, Staal B, Jain M, Fahrmann J, Worthington C, Prosser D, Velokokhatnaya L, Lopez C, Tang R, Hurd MW, Natarajan G, Kumar S, Smith L, Hanash S, Batra SK, Maitra A, Lokshin A, Huang Y, Brand RE. A rigorous multi-laboratory study of known PDAC biomarkers identifies increased sensitivity and specificity over CA19-9 alone. Cancer Lett. 2024 Nov 01; 604:217245. PMID: 39276915.
      Citations: 1     Fields:    Translation:Humans
    7. Zheng Y, Wagner PD, Singal AG, Hanash SM, Srivastava S, Huang Y, Zhao YQ, Chari ST, Marquez G, Etizioni R, Marsh TL, Feng Z. Designing Rigorous and Efficient Clinical Utility Studies for Early Detection Biomarkers. Cancer Epidemiol Biomarkers Prev. 2024 Sep 03; 33(9):1150-1157. PMID: 39223980; PMCID: PMC11534000.
      Citations:    Fields:    Translation:Humans
    8. Gendarme S, Maitre B, Hanash S, Pairon JC, Canoui-Poitrine F, Choua?d C. Beyond lung cancer screening, an opportunity for early detection of chronic obstructive pulmonary disease and cardiovascular diseases. JNCI Cancer Spectr. 2024 Sep 02; 8(5). PMID: 39270051; PMCID: PMC11472859.
      Citations: 1     Fields:    Translation:HumansPHPublic Health
    9. Fahrmann JF, Ghasemi SM, Han CY, Wu R, Dennison JB, Vykoukal J, Celestino J, Lu K, Lu Z, Drescher C, Do KA, Hanash S, Bast RC, Irajizad E. A metabolite-based liquid biopsy for detection of ovarian cancer. Biomark Res. 2024 Aug 28; 12(1):91. PMID: 39192316; PMCID: PMC11350929.
      Citations:    
    10. Takeda M, Theardy MS, Sorokin A, Coker O, Kanikarla P, Chen S, Yang Z, Nguyen P, Wei Y, Yao J, Wang X, Yan L, Jin Y, Cai Y, Paku M, Chen Z, Li KZ, Citron F, Tomihara H, Gao S, Deem AK, Zhao J, Wang H, Hanash S, DePinho RA, Maitra A, Draetta GF, Ying H, Kopetz S, Yao W. Therapeutic targeting of Syndecan-1 axis overcomes acquired resistance to KRAS-targeted therapy in gastrointestinal cancers. bioRxiv. 2024 Aug 08. PMID: 39211217; PMCID: PMC11361106.
      Citations:    
    11. Cheng X, Dai E, Wu J, Flores NM, Chu Y, Wang R, Dang M, Xu Z, Han G, Liu Y, Chatterjee D, Hu C, Ying J, Du Y, Yang L, Guan X, Mo S, Cao X, Pei G, Jiang J, Lu X, Benitez AM, Waters RE, Pizzi MP, Shanbhag N, Fan Y, Peng F, Hanash SM, Calin G, Futreal A, Song S, Yee C, Mazur PK, Qin JJ, Ajani JA, Wang L, Cheng X, Dai E, Wu J, Flores NM, Chu Y, Wang R, Dang M, Xu Z, Han G, Liu Y, Chatterjee D, Hu C, Ying J, Du Y, Yang L, Guan X, Mo S, Cao X, Pei G, Jiang J, Lu X, Benitez AM, Waters RE, Pizzi MP, Shanbhag N, Fan Y, Peng F, Hanash SM, Calin G, Futreal A, Song S, Yee C, Mazur PK, Qin JJ, Ajani JA, Wang L. Atlas of Metastatic Gastric Cancer Links Ferroptosis to Disease Progression and Immunotherapy Response. Gastroenterology. 2024 Dec; 167(7):1345-1357. PMID: 39097198.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    12. Song L, Irajizad E, Rundle A, Sesso HD, Gaziano JM, Vykoukal JV, Do KA, Dennison JB, Ostrin EJ, Fahrmann JF, Perera F, Hanash S. Validation of a Blood-Based Protein Biomarker Panel for a Risk Assessment of Lethal Lung Cancer in the Physicians' Health Study. Cancers (Basel). 2024 May 30; 16(11). PMID: 38893188; PMCID: PMC11171146.
      Citations:    
    13. Haab B, Qian L, Staal B, Jain M, Fahrmann J, Worthington C, Prosser D, Velokokhatnaya L, Lopez C, Tang R, Hurd MW, Natarajan G, Kumar S, Smith L, Hanash S, Batra SK, Maitra A, Lokshin A, Huang Y, Brand RE. A Rigorous Multi-Laboratory Study of Known PDAC Biomarkers Identifies Increased Sensitivity and Specificity Over CA19-9 Alone. bioRxiv. 2024 May 26. PMID: 38826212; PMCID: PMC11142185.
      Citations:    
    14. Ghasem SM, Fahrmann JF, Hanash S, Do KA, Long JP, Irajizad E. A novel method to guide biomarker combinations to optimize the sensitivity. bioRxiv. 2024 Apr 15. PMID: 38659773; PMCID: PMC11042214.
      Citations:    
    15. Hanash SM, Yu PP. Multicancer detection tests: What we know and what we don't know. CA Cancer J Clin. 2024 Jul-Aug; 74(4):339-340. PMID: 38517471.
      Citations:    Fields:    Translation:HumansPHPublic Health
    16. Ben-Ami R, Wang QL, Zhang J, Supplee JG, Fahrmann JF, Lehmann-Werman R, Brais LK, Nowak J, Yuan C, Loftus M, Babic A, Irajizad E, Davidi T, Zick A, Hubert A, Neiman D, Piyanzin S, Gal-Rosenberg O, Horn A, Shemer R, Glaser B, Boos N, Jajoo K, Lee L, Clancy TE, Rubinson DA, Ng K, Chabot JA, Kastrinos F, Kluger M, Aguirre AJ, J?nne PA, Bardeesy N, Stanger B, O'Hara MH, Till J, Maitra A, Carpenter EL, Bullock AJ, Genkinger J, Hanash SM, Paweletz CP, Dor Y, Wolpin BM. Protein biomarkers and alternatively methylated cell-free DNA detect early stage pancreatic cancer. Gut. 2024 03 07; 73(4):639-648. PMID: 38123998; PMCID: PMC10958271.
      Citations: 6     Fields:    Translation:HumansCells
    17. Faramand RG, Lee SB, Jain MD, Cao B, Wang X, Rejeski K, Subklewe M, Fahrmann JF, Saini NY, Hanash SM, Kang YP, Chang D, Rodriguez PC, Dean EA, Nishihori T, Shah BD, Lazaryan A, Chavez J, Khimani F, Pinilla-Ibarz JA, Dam M, Reid KM, Corallo SA, Menges M, Hidalgo Vargas M, Mandula JK, Holliday BA, Bachmeier CA, Speth K, Song Q, Mattie M, Locke FL, Davila ML. Baseline Serum Inflammatory Proteins Predict Poor CAR T Outcomes in Diffuse Large B-cell Lymphoma. Blood Cancer Discov. 2024 Mar 01; 5(2):106-113. PMID: 38194367; PMCID: PMC10905320.
      Citations: 3     Fields:    Translation:Humans
    18. Tai MC, Bantis LE, Parhy G, Kato T, Tanaka I, Chow CW, Fujimoto J, Behrens C, Hase T, Kawaguchi K, Fahrmann JF, Ostrin EJ, Yokoi K, Chen-Yoshikawa TF, Hasegawa Y, Hanash SM, Wistuba II, Taguchi A. Circulating microRNA Panel for Prediction of Recurrence and Survival in Early-Stage Lung Adenocarcinoma. Int J Mol Sci. 2024 Feb 16; 25(4). PMID: 38397007; PMCID: PMC10888571.
      Citations: 1     Fields:    Translation:Humans
    19. Le?n-Letelier RA, Dou R, Vykoukal J, Yip-Schneider MT, Maitra A, Irajizad E, Wu R, Dennison JB, Do KA, Zhang J, Schmidt CM, Hanash S, Fahrmann JF. Contributions of the Microbiome-Derived Metabolome for Risk Assessment and Prognostication of Pancreatic Cancer. Clin Chem. 2024 01 04; 70(1):102-115. PMID: 38175578.
      Citations: 4     Fields:    Translation:Humans
    20. Zhang X, Irajizad E, Hoffman KL, Fahrmann JF, Li F, Seo YD, Browman GJ, Dennison JB, Vykoukal J, Luna PN, Siu W, Wu R, Murage E, Ajami NJ, McQuade JL, Wargo JA, Long JP, Do KA, Lampe JW, Basen-Engquist KM, Okhuysen PC, Kopetz S, Hanash SM, Petrosino JF, Scheet P, Daniel CR. Modulating a prebiotic food source influences inflammation and immune-regulating gut microbes and metabolites: insights from the BE GONE trial. EBioMedicine. 2023 Dec; 98:104873. PMID: 38040541; PMCID: PMC10755114.
      Citations: 1     Fields:    Translation:Humans
    21. Fahrmann JF, Wasylishen AR, Pieterman CRC, Irajizad E, Vykoukal J, Wu R, Dennison JB, Peterson CB, Zhao H, Do KA, Halperin DM, Agarwal SK, Blau JE, Jha S, Rivero JD, Nilubol N, Walter MF, Welch JM, Weinstein LS, Vriens MR, van Leeuwaarde RS, van Treijen MJC, Valk GD, Perrier ND, Hanash SM, Katayama H. Blood-based Proteomic Signatures Associated With MEN1-related Duodenopancreatic Neuroendocrine Tumor Progression. J Clin Endocrinol Metab. 2023 11 17; 108(12):3260-3271. PMID: 37307230; PMCID: PMC11032251.
      Citations: 1     Fields:    Translation:HumansAnimals
    22. Fan Y, Song S, Li Y, Dhar SS, Jin J, Yoshimura K, Yao X, Wang R, Scott AW, Pizzi MP, Wu J, Ma L, Calin GA, Hanash S, Wang L, Curran M, Ajani JA. Galectin-3 Cooperates with CD47 to Suppress Phagocytosis and T-cell Immunity in Gastric Cancer Peritoneal Metastases. Cancer Res. 2023 11 15; 83(22):3726-3738. PMID: 37738407; PMCID: PMC10843008.
      Citations:    Fields:    Translation:AnimalsCells
    23. Deng N, Reyes-Uribe L, Fahrmann JF, Thoman WS, Munsell MF, Dennison JB, Murage E, Wu R, Hawk ET, Thirumurthi S, Lynch PM, Dieli-Conwright CM, Lazar AJ, Jindal S, Chu K, Chelvanambi M, Basen-Engquist K, Li Y, Wargo JA, McAllister F, Allison JP, Sharma P, Sinha KM, Hanash S, Gilchrist SC, Vilar E. Exercise Training Reduces the Inflammatory Response and Promotes Intestinal Mucosa-Associated Immunity in Lynch Syndrome. Clin Cancer Res. 2023 11 01; 29(21):4361-4372. PMID: 37724990; PMCID: PMC10618653.
      Citations: 1     Fields:    Translation:HumansCTClinical Trials
    24. Geng C, Zhang MC, Manyam GC, Vykoukal JV, Fahrmann JF, Peng S, Wu C, Park S, Kondraganti S, Wang D, Robinson BD, Loda M, Barbieri CE, Yap TA, Corn PG, Hanash S, Broom BM, Pili? PG, Thompson TC. SPOP Mutations Target STING1 Signaling in Prostate Cancer and Create Therapeutic Vulnerabilities to PARP Inhibitor-Induced Growth Suppression. Clin Cancer Res. 2023 11 01; 29(21):4464-4478. PMID: 37581614; PMCID: PMC11017857.
      Citations: 1     Fields:    Translation:Humans
    25. Parks CG, Wilson LE, Capello M, Deane KD, Hanash SM. Tumor-Associated and Systemic Autoimmunity in Pre-Clinical Breast Cancer among Post-Menopausal Women. Biomolecules. 2023 10 24; 13(11). PMID: 38002248; PMCID: PMC10669589.
      Citations:    Fields:    Translation:Humans
    26. Le?n-Letelier RA, Dou R, Vykoukal J, Sater AHA, Ostrin E, Hanash S, Fahrmann JF. The kynurenine pathway presents multi-faceted metabolic vulnerabilities in cancer. Front Oncol. 2023; 13:1256769. PMID: 37876966; PMCID: PMC10591110.
      Citations:    
    27. Irajizad E, Kenney A, Tang T, Vykoukal J, Wu R, Murage E, Dennison JB, Sans M, Long JP, Loftus M, Chabot JA, Kluger MD, Kastrinos F, Brais L, Babic A, Jajoo K, Lee LS, Clancy TE, Ng K, Bullock A, Genkinger JM, Maitra A, Do KA, Yu B, Wolpin BM, Hanash S, Fahrmann JF. A blood-based metabolomic signature predictive of risk for pancreatic cancer. Cell Rep Med. 2023 09 19; 4(9):101194. PMID: 37729870; PMCID: PMC10518621.
      Citations: 3     Fields:    Translation:Humans
    28. Sans M, Chen Y, Thege FI, Dou R, Min J, Yip-Schneider M, Zhang J, Wu R, Irajizad E, Makino Y, Rajapakshe KI, Hurd MW, Le?n-Letelier RA, Vykoukal J, Dennison JB, Do KA, Wolff RA, Guerrero PA, Kim MP, Schmidt CM, Maitra A, Hanash S, Fahrmann JF. Integrated spatial transcriptomics and lipidomics of precursor lesions of pancreatic cancer identifies enrichment of long chain sulfatide biosynthesis as an early metabolic alteration. bioRxiv. 2023 Aug 15. PMID: 37645752; PMCID: PMC10462088.
      Citations:    
    29. Wang R, Song S, Qin J, Yoshimura K, Peng F, Chu Y, Li Y, Fan Y, Jin J, Dang M, Dai E, Pei G, Han G, Hao D, Li Y, Chatterjee D, Harada K, Pizzi MP, Scott AW, Tatlonghari G, Yan X, Xu Z, Hu C, Mo S, Shanbhag N, Lu Y, Sewastjanow-Silva M, Fouad Abdelhakeem AA, Peng G, Hanash SM, Calin GA, Yee C, Mazur P, Marsden AN, Futreal A, Wang Z, Cheng X, Ajani JA, Wang L. Evolution of immune and stromal cell states and ecotypes during gastric adenocarcinoma progression. Cancer Cell. 2023 08 14; 41(8):1407-1426.e9. PMID: 37419119; PMCID: PMC10528152.
      Citations: 2     Fields:    Translation:HumansCells
    30. Irajizad E, Fahrmann JF, Marsh T, Vykoukal J, Dennison JB, Long JP, Do KA, Feng Z, Hanash S, Ostrin EJ. Mortality Benefit of a Blood-Based Biomarker Panel for Lung Cancer on the Basis of the Prostate, Lung, Colorectal, and Ovarian Cohort. J Clin Oncol. 2023 09 20; 41(27):4360-4368. PMID: 37379494; PMCID: PMC10522105.
      Citations: 4     Fields:    Translation:Humans
    31. Liu S, Xie SM, Liu W, Gagea M, Hanker AB, Nguyen N, Singareeka Raghavendra A, Yang-Kolodji G, Chu F, Neelapu SS, Marchese A, Hanash S, Zimmermann J, Arteaga CL, Tripathy D. Targeting CXCR4 abrogates resistance to trastuzumab by blocking cell cycle progression and synergizes with docetaxel in breast cancer treatment. Breast Cancer Res. 2023 06 06; 25(1):62. PMID: 37280713; PMCID: PMC10245436.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    32. Ostrin EJ, Rider NL, Alousi AM, Irajizad E, Li L, Peng Q, Kim ST, Bashoura L, Arain MH, Noor LZ, Patel N, Mehta R, Popat UR, Hosing C, Jenq RR, Rondon G, Hanash SM, Paczesny S, Shpall EJ, Champlin RE, Dickey BF, Sheshadri A. A Nasal Inflammatory Cytokine Signature Is Associated with Early Graft-versus-Host Disease of the Lung after Allogeneic Hematopoietic Cell Transplantation: Proof of Concept. Immunohorizons. 2023 Jun 01; 7(6):421-430. PMID: 37289498; PMCID: PMC10491477.
      Citations:    Fields:    Translation:Humans
    33. Zhao S, Wang R, Song S, Hao D, Han G, Song X, Zhang J, Pizzi MP, Shanbhag N, Futreal A, Badgwell B, Harada K, Calin G, Vykoukal J, Yu CY, Katayama H, Hanash SM, Wang L, Ajani JA. Proteogenomic landscape of gastric adenocarcinoma peritoneal metastases. iScience. 2023 Jun 16; 26(6):106913. PMID: 37305699; PMCID: PMC10251128.
      Citations: 1     
    34. Liu S, Xie SM, Liu W, Gagea M, Hanker AB, Nguyen N, Raghavendra AS, Yang-Kolodji G, Chu F, Neelapu SS, Hanash S, Zimmermann J, Arteaga CL, Tripathy D. Targeting CXCR4 abrogates resistance to trastuzumab by blocking cell cycle progression and synergizes with docetaxel in breast cancer treatment. Res Sq. 2023 Feb 14. PMID: 36824840; PMCID: PMC9949251.
      Citations:    
    35. Le?n-Letelier RA, Abdel Sater AH, Chen Y, Park S, Wu R, Irajizad E, Dennison JB, Katayama H, Vykoukal JV, Hanash S, Ostrin EJ, Fahrmann JF. Kynureninase Upregulation Is a Prominent Feature of NFR2-Activated Cancers and Is Associated with Tumor Immunosuppression and Poor Prognosis. Cancers (Basel). 2023 Jan 29; 15(3). PMID: 36765792; PMCID: PMC9913753.
      Citations: 1     
    36. Chen Y, Le?n-Letelier RA, Abdel Sater AH, Vykoukal J, Dennison JB, Hanash S, Fahrmann JF. c-MYC-Driven Polyamine Metabolism in Ovarian Cancer: From Pathogenesis to Early Detection and Therapy. Cancers (Basel). 2023 Jan 19; 15(3). PMID: 36765581; PMCID: PMC9913358.
      Citations: 1     
    37. Fahrmann JF, Saini NY, Chia-Chi C, Irajizad E, Strati P, Nair R, Fayad LE, Ahmed S, Lee HJ, Iyer S, Steiner R, Vykoukal J, Wu R, Dennison JB, Nastoupil L, Jain P, Wang M, Green M, Westin J, Blumenberg V, Davila M, Champlin R, Shpall EJ, Kebriaei P, Flowers CR, Jain M, Jenq R, Stein-Thoeringer CK, Subklewe M, Neelapu SS, Hanash S. A polyamine-centric, blood-based metabolite panel predictive of poor response to CAR-T cell therapy in large B cell lymphoma. Cell Rep Med. 2022 11 15; 3(11):100720. PMID: 36384092; PMCID: PMC9729795.
      Citations: 1     Fields:    Translation:Humans
    38. Irajizad E, Han CY, Celestino J, Wu R, Murage E, Spencer R, Dennison JB, Vykoukal J, Long JP, Do KA, Drescher C, Lu K, Lu Z, Bast RC, Hanash S, Fahrmann JF. A Blood-Based Metabolite Panel for Distinguishing Ovarian Cancer from Benign Pelvic Masses. Clin Cancer Res. 2022 11 01; 28(21):4669-4676. PMID: 36037307; PMCID: PMC9633421.
      Citations:    
    39. Rigaud B, Weaver OO, Dennison JB, Awais M, Anderson BM, Chiang TD, Yang WT, Leung JWT, Hanash SM, Brock KK. Deep Learning Models for Automated Assessment of Breast Density Using Multiple Mammographic Image Types. Cancers (Basel). 2022 Oct 13; 14(20). PMID: 36291787; PMCID: PMC9599904.
      Citations:    
    40. Le?n-Letelier RA, Katayama H, Hanash S. Mining the Immunopeptidome for Antigenic Peptides in Cancer. Cancers (Basel). 2022 Oct 11; 14(20). PMID: 36291752; PMCID: PMC9599891.
      Citations: 3     
    41. Park S, Sater AHA, Fahrmann JF, Irajizad E, Cai Y, Katayama H, Vykoukal J, Kobayashi M, Dennison JB, Garcia-Manero G, Mullighan CG, Gu Z, Konopleva M, Hanash S. Novel UHRF1-MYC Axis in Acute Lymphoblastic Leukemia. Cancers (Basel). 2022 Aug 31; 14(17). PMID: 36077796; PMCID: PMC9455066.
      Citations:    
    42. Vykoukal J, Fahrmann JF, Patel N, Shimizu M, Ostrin EJ, Dennison JB, Ivan C, Goodman GE, Thornquist MD, Barnett MJ, Feng Z, Calin GA, Hanash SM. Contributions of Circulating microRNAs for Early Detection of Lung Cancer. Cancers (Basel). 2022 Aug 30; 14(17). PMID: 36077759; PMCID: PMC9454665.
      Citations:    
    43. Fan Y, Li Y, Yao X, Jin J, Scott A, Liu B, Wang S, Huo L, Wang Y, Wang R, Pool Pizzi M, Ma L, Shao S, Sewastjanow-Silva M, Waters R, Chatterjee D, Liu B, Shanbhag N, Peng G, Calin GA, Mazur PK, Hanash SM, Ishizawa J, Hirata Y, Nagano O, Wang Z, Wang L, Xian W, McKeon F, Ajani JA, Song S. Epithelial SOX9 drives progression and metastases of gastric adenocarcinoma by promoting immunosuppressive tumour microenvironment. Gut. 2023 04; 72(4):624-637. PMID: 36002248.
      Citations:    
    44. Gregg JR, Kim J, Logothetis C, Hanash S, Zhang X, Manyam G, Muir K, UKGPCS Collaborative Group, Giles GG, Stanford JL, Berndt SI, Kogevinas M, Brenner H, Eeles RA, PRACTICAL Consortium, Wei P, Daniel CR. Coffee Intake, Caffeine Metabolism Genotype, and Survival Among Men with Prostate Cancer. Eur Urol Oncol. 2023 Jun; 6(3):282-288. PMID: 35995710; PMCID: PMC9939555.
      Citations:    
    45. Irajizad E, Fahrmann JF, Long JP, Vykoukal J, Kobayashi M, Capello M, Yu CY, Cai Y, Hsiao FC, Patel N, Park S, Peng Q, Dennison JB, Kato T, Tai MC, Taguchi A, Kadara H, Wistuba II, Katayama H, Do KA, Hanash SM, Ostrin EJ. A Comprehensive Search of Non-Canonical Proteins in Non-Small Cell Lung Cancer and Their Impact on the Immune Response. Int J Mol Sci. 2022 Aug 11; 23(16). PMID: 36012199; PMCID: PMC9409146.
      Citations:    
    46. Irajizad E, Wu R, Vykoukal J, Murage E, Spencer R, Dennison JB, Moulder S, Ravenberg E, Lim B, Litton J, Tripathym D, Valero V, Damodaran S, Rauch GM, Adrada B, Candelaria R, White JB, Brewster A, Arun B, Long JP, Do KA, Hanash S, Fahrmann JF. Application of Artificial Intelligence to Plasma Metabolomics Profiles to Predict Response to Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer. Front Artif Intell. 2022; 5:876100. PMID: 36034598; PMCID: PMC9403735.
      Citations:    
    47. Hanash S. Lung cancer susceptibility beyond smoking history: opportunities and challenges. Transl Lung Cancer Res. 2022 Jul; 11(7):1230-1232. PMID: 35958329; PMCID: PMC9359957.
      Citations:    
    48. Li YJ, Fahrmann JF, Aftabizadeh M, Zhao Q, Tripathi SC, Zhang C, Yuan Y, Ann D, Hanash S, Yu H. Fatty acid oxidation protects cancer cells from apoptosis by increasing mitochondrial membrane lipids. Cell Rep. 2022 Jun 28; 39(13):111044. PMID: 35767954.
      Citations:    Fields:    
    49. Yao S, Campbell PT, Ugai T, Gierach G, Abubakar M, Adalsteinsson V, Almeida J, Brennan P, Chanock S, Golub T, Hanash S, Harris C, Hathaway CA, Kelsey K, Landi MT, Mahmood F, Newton C, Quackenbush J, Rodig S, Schultz N, Tearney G, Tworoger SS, Wang M, Zhang X, Garcia-Closas M, Rebbeck TR, Ambrosone CB, Ogino S. Proceedings of the fifth international Molecular Pathological Epidemiology (MPE) meeting. Cancer Causes Control. 2022 Aug; 33(8):1107-1120. PMID: 35759080; PMCID: PMC9244289.
      Citations:    Fields:    Translation:Humans
    50. Li YJ, Fahrmann JF, Aftabizadeh M, Zhao Q, Tripathi SC, Zhang C, Yuan Y, Ann D, Hanash S, Yu H. Fatty acid oxidation protects cancer cells from apoptosis by increasing mitochondrial membrane lipids. Cell Rep. 2022 05 31; 39(9):110870. PMID: 35649368.
      Citations:    Fields:    Translation:HumansCells
    51. Fahrmann JF, Tanaka I, Irajizad E, Mao X, Dennison JB, Murage E, Casabar J, Mayo J, Peng Q, Celiktas M, Vykoukal JV, Park S, Taguchi A, Delgado O, Tripathi SC, Katayama H, Soto LMS, Rodriguez-Canales J, Behrens C, Wistuba I, Hanash S, Ostrin EJ. Mutational Activation of the NRF2 Pathway Upregulates Kynureninase Resulting in Tumor Immunosuppression and Poor Outcome in Lung Adenocarcinoma. Cancers (Basel). 2022 May 21; 14(10). PMID: 35626147; PMCID: PMC9139317.
      Citations:    
    52. Tanaka I, Dayde D, Tai MC, Mori H, Solis LM, Tripathi SC, Fahrmann JF, Unver N, Parhy G, Jain R, Parra ER, Murakami Y, Aguilar-Bonavides C, Mino B, Celiktas M, Dhillon D, Casabar JP, Nakatochi M, Stingo F, Baladandayuthapani V, Wang H, Katayama H, Dennison JB, Lorenzi PL, Do KA, Fujimoto J, Behrens C, Ostrin EJ, Rodriguez-Canales J, Hase T, Fukui T, Kajino T, Kato S, Yatabe Y, Hosoda W, Kawaguchi K, Yokoi K, Chen-Yoshikawa TF, Hasegawa Y, Gazdar AF, Wistuba II, Hanash S, Taguchi A. SRGN-Triggered Aggressive and Immunosuppressive Phenotype in a Subset of TTF-1-Negative Lung Adenocarcinomas. J Natl Cancer Inst. 2022 02 07; 114(2):290-301. PMID: 34524427; PMCID: PMC8826620.
      Citations: 2     Fields:    Translation:HumansAnimals
    53. Fahrmann JF, Marsh T, Irajizad E, Patel N, Murage E, Vykoukal J, Dennison JB, Do KA, Ostrin E, Spitz MR, Lam S, Shete S, Meza R, Feng Z, Hanash SM, Tammem?gi MC. Blood-Based Biomarker Panel for Personalized Lung Cancer Risk Assessment. J Clin Oncol. 2022 03 10; 40(8):876-883. PMID: 34995129; PMCID: PMC8906454.
      Citations: 3     Fields:    Translation:HumansPHPublic Health
    54. Capello M, Katayama H, Hanash SM. Proteomic Profiling of the Tumor Microenvironment. Methods Mol Biol. 2022; 2435:157-167. PMID: 34993945.
      Citations:    Fields:    Translation:Cells
    55. Chen Y, Capello M, Rios Perez MV, Vykoukal JV, Roife D, Kang Y, Prakash LR, Katayama H, Irajizad E, Fleury A, Ferri-Borgogno S, Baluya DL, Dennison JB, Do KA, Fiehn O, Maitra A, Wang H, Chiao PJ, Katz MHG, Fleming JB, Hanash SM, Fahrmann JF. CES2 sustains HNF4a expression to promote pancreatic adenocarcinoma progression through an epoxide hydrolase-dependent regulatory loop. Mol Metab. 2022 02; 56:101426. PMID: 34971802; PMCID: PMC8841288.
      Citations:    Fields:    Translation:HumansAnimalsCells
    56. Fahrmann JF, Wasylishen AR, Pieterman CRC, Irajizad E, Vykoukal J, Murage E, Wu R, Dennison JB, Krishna H, Peterson CB, Lozano G, Zhao H, Do KA, Halperin DM, Agarwal SK, Blau JE, Del Rivero J, Nilubol N, Walter MF, Welch JM, Weinstein LS, Vriens MR, van Leeuwaarde RS, van Treijen MJC, Valk GD, Perrier ND, Hanash SM. A Blood-based Polyamine Signature Associated With MEN1 Duodenopancreatic Neuroendocrine Tumor Progression. J Clin Endocrinol Metab. 2021 11 19; 106(12):e4969-e4980. PMID: 34318891; PMCID: PMC8864750.
      Citations: 2     Fields:    Translation:Humans
    57. Pandey A, Tripathi SC, Mai J, Hanash SM, Shen H, Mitra S, Rostomily RC. Combinatorial Effect of PLK1 Inhibition with Temozolomide and Radiation in Glioblastoma. Cancers (Basel). 2021 Oct 12; 13(20). PMID: 34680264; PMCID: PMC8533781.
      Citations:    
    58. Kato T, Vykoukal JV, Fahrmann JF, Hanash S. Extracellular Vesicles in Lung Cancer: Prospects for Diagnostic and Therapeutic Applications. Cancers (Basel). 2021 Sep 14; 13(18). PMID: 34572829; PMCID: PMC8469977.
      Citations: 1     
    59. Zhu M, Peng R, Liang X, Lan Z, Tang M, Hou P, Song JH, Mak CSL, Park J, Zheng SE, Huang A, Ma X, Chen R, Chang Q, Logothetis CJ, Jain AK, Lin SH, Katayama H, Hanash S, Wang G. P4HA2-induced prolyl hydroxylation suppresses YAP1-mediated prostate cancer cell migration, invasion, and metastasis. Oncogene. 2021 10; 40(41):6049-6056. PMID: 34471235; PMCID: PMC8526415.
      Citations: 3     Fields:    Translation:HumansAnimals
    60. Fahrmann JF, Katayama H, Irajizad E, Chakraborty A, Kato T, Mao X, Park S, Murage E, Rusling L, Yu CY, Cai Y, Hsiao FC, Dennison JB, Tran H, Ostrin E, Wilson DO, Yuan JM, Vykoukal J, Hanash S. Plasma Based Protein Signatures Associated with Small Cell Lung Cancer. Cancers (Basel). 2021 Aug 06; 13(16). PMID: 34439128; PMCID: PMC8391533.
      Citations: 1     
    61. Dayde D, Gunther J, Hirayama Y, Weksberg DC, Boutin A, Parhy G, Aguilar-Bonavides C, Wang H, Katayama H, Abe Y, Do KA, Hara K, Kinoshita T, Komori K, Shimizu Y, Tajika M, Niwa Y, Wang YA, DePinho R, Hanash S, Krishnan S, Taguchi A. Identification of Blood-Based Biomarkers for the Prediction of the Response to Neoadjuvant Chemoradiation in Rectal Cancer. Cancers (Basel). 2021 Jul 20; 13(14). PMID: 34298853; PMCID: PMC8306983.
      Citations: 2     
    62. Katayama H, Kobayashi M, Irajizad E, Sevillarno A, Patel N, Mao X, Rusling L, Vykoukal J, Cai Y, Hsiao F, Yu CY, Long J, Liu J, Esteva F, Fahrmann J, Hanash S. Protein citrullination as a source of cancer neoantigens. J Immunother Cancer. 2021 06; 9(6). PMID: 34112737; PMCID: PMC8194337.
      Citations: 4     Fields:    Translation:HumansCells
    63. Stanton SE, Gad E, Ramos E, Corulli L, Annis J, Childs J, Katayama H, Hanash S, Marks J, Disis ML. Tumor-associated autoantibodies from mouse breast cancer models are found in serum of breast cancer patients. NPJ Breast Cancer. 2021 May 11; 7(1):50. PMID: 33976232; PMCID: PMC8113561.
      Citations: 1     
    64. Shu H, Chiang T, Wei P, Do KA, Lesslie MD, Cohen EO, Srinivasan A, Moseley TW, Chang Sen LQ, Leung JWT, Dennison JB, Hanash SM, Weaver OO. A Deep Learning Approach to Re-create Raw Full-Field Digital Mammograms for Breast Density and Texture Analysis. Radiol Artif Intell. 2021 Jul; 3(4):e200097. PMID: 34350403; PMCID: PMC8328112.
      Citations: 1     
    65. Bommi PV, Bowen CM, Reyes-Uribe L, Wu W, Katayama H, Rocha P, Parra ER, Francisco-Cruz A, Ozcan Z, Tosti E, Willis JA, Wu H, Taggart MW, Burks JK, Lynch PM, Edelmann W, Scheet PA, Wistuba II, Sinha KM, Hanash SM, Vilar E. The Transcriptomic Landscape of Mismatch Repair-Deficient Intestinal Stem Cells. Cancer Res. 2021 05 15; 81(10):2760-2773. PMID: 34003775; PMCID: PMC8318201.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    66. Fahrmann JF, Irajizad E, Kobayashi M, Vykoukal J, Dennison JB, Murage E, Wu R, Long JP, Do KA, Celestino J, Lu KH, Lu Z, Bast RC, Hanash S. A MYC-Driven Plasma Polyamine Signature for Early Detection of Ovarian Cancer. Cancers (Basel). 2021 Feb 22; 13(4). PMID: 33671595; PMCID: PMC7927060.
      Citations: 3     
    67. Bantis LE, Tsimikas JV, Chambers GR, Capello M, Hanash S, Feng Z. The length of the receiver operating characteristic curve and the two cutoff Youden index within a robust framework for discovery, evaluation, and cutoff estimation in biomarker studies involving improper receiver operating characteristic curves. Stat Med. 2021 03 30; 40(7):1767-1789. PMID: 33530129; PMCID: PMC9976806.
      Citations:    Fields:    
    68. Wang R, Dang M, Harada K, Han G, Wang F, Pool Pizzi M, Zhao M, Tatlonghari G, Zhang S, Hao D, Lu Y, Zhao S, Badgwell BD, Blum Murphy M, Shanbhag N, Estrella JS, Roy-Chowdhuri S, Abdelhakeem AAF, Wang Y, Peng G, Hanash S, Calin GA, Song X, Chu Y, Zhang J, Li M, Chen K, Lazar AJ, Futreal A, Song S, Ajani JA, Wang L. Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma. Nat Med. 2021 01; 27(1):141-151. PMID: 33398161; PMCID: PMC8074162.
      Citations: 30     Fields:    Translation:HumansCells
    69. Hao D, He S, Harada K, Pizzi MP, Lu Y, Guan P, Chen L, Wang R, Zhang S, Sewastjanow-Silva M, Abdelhakeem A, Shanbhag N, Bhutani M, Han G, Lee JH, Zhao S, Weston B, Blum Murphy M, Waters R, Estrella JS, Roy-Chowdhuri S, Gan Q, Lee JS, Peng G, Hanash SM, Calin GA, Song X, Zhang J, Song S, Wang L, Ajani JA. Integrated genomic profiling and modelling for risk stratification in patients with advanced oesophagogastric adenocarcinoma. Gut. 2021 11; 70(11):2055-2065. PMID: 33334899; PMCID: PMC10643023.
      Citations: 11     Fields:    Translation:Humans
    70. Fahrmann JF, Schmidt CM, Mao X, Irajizad E, Loftus M, Zhang J, Patel N, Vykoukal J, Dennison JB, Long JP, Do KA, Zhang J, Chabot JA, Kluger MD, Kastrinos F, Brais L, Babic A, Jajoo K, Lee LS, Clancy TE, Ng K, Bullock A, Genkinger J, Yip-Schneider MT, Maitra A, Wolpin BM, Hanash S. Lead-Time Trajectory of CA19-9 as an Anchor Marker for Pancreatic Cancer Early Detection. Gastroenterology. 2021 03; 160(4):1373-1383.e6. PMID: 33333055; PMCID: PMC8783758.
      Citations: 14     Fields:    Translation:HumansPHPublic Health
    71. Capello M, Fahrmann JF, Rios Perez MV, Vykoukal JV, Irajizad E, Tripathi SC, Roife D, Bantis LE, Kang Y, Kundnani DL, Xu H, Prakash LR, Long JP, Katayama H, Fleury A, Ferri-Borgogno S, Baluya DL, Dennison JB, Aguilar-Bonavides C, Casabar JP, Celiktas M, Do KA, Fiehn O, Maitra A, Wang H, Feng Z, Chiao PJ, Katz MH, Fleming JB, Hanash SM. CES2 Expression in Pancreatic Adenocarcinoma Is Predictive of Response to Irinotecan and Is Associated With Type 2 Diabetes. JCO Precis Oncol. 2020 Nov; 4:426-436. PMID: 35050739; PMCID: PMC10860959.
      Citations: 1     Fields:    
    72. Ostrin EJ, Bantis LE, Wilson DO, Patel N, Wang R, Kundnani D, Adams-Haduch J, Dennison JB, Fahrmann JF, Chiu HT, Gazdar A, Feng Z, Yuan JM, Hanash SM. Contribution of a Blood-Based Protein Biomarker Panel to the Classification of Indeterminate Pulmonary Nodules. J Thorac Oncol. 2021 02; 16(2):228-236. PMID: 33137463; PMCID: PMC8218328.
      Citations: 3     Fields:    Translation:Humans
    73. Ostrin EJ, Sidransky D, Spira A, Hanash SM. Biomarkers for Lung Cancer Screening and Detection. Cancer Epidemiol Biomarkers Prev. 2020 12; 29(12):2411-2415. PMID: 33093160; PMCID: PMC7710615.
      Citations: 10     Fields:    Translation:Humans
    74. Shimura T, Dayde D, Wang H, Okuda Y, Iwasaki H, Ebi M, Kitagawa M, Yamada T, Yamada T, Hanash SM, Taguchi A, Kataoka H. Novel urinary protein biomarker panel for early diagnosis of gastric cancer. Br J Cancer. 2020 11; 123(11):1656-1664. PMID: 32934343; PMCID: PMC7686371.
      Citations: 15     Fields:    Translation:Humans
    75. Subbalakshmi AR, Kundnani D, Biswas K, Ghosh A, Hanash SM, Tripathi SC, Jolly MK. NFATc Acts as a Non-Canonical Phenotypic Stability Factor for a Hybrid Epithelial/Mesenchymal Phenotype. Front Oncol. 2020; 10:553342. PMID: 33014880; PMCID: PMC7506140.
      Citations: 6     
    76. Vykoukal J, Fahrmann JF, Gregg JR, Tang Z, Basourakos S, Irajizad E, Park S, Yang G, Creighton CJ, Fleury A, Mayo J, Paulucci-Holthauzen A, Dennison JB, Murage E, Peterson CB, Davis JW, Kim J, Hanash S, Thompson TC. Caveolin-1-mediated sphingolipid oncometabolism underlies a metabolic vulnerability of prostate cancer. Nat Commun. 2020 08 27; 11(1):4279. PMID: 32855410; PMCID: PMC7453025.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    77. Chen B, Dragomir MP, Fabris L, Bayraktar R, Liu X, Tang C, Li Y, Shimura T, Ivkovic TC, De Los Santos MC, Anfossi S, Shimizu M, Shah MY, Ling H, Shen P, Multani AS, Pardini B, Burks JK, Katayama H, Reineke LC, Huo L, Syed M, Song S, Ferracin M, Oki E, Fromm B, Ivan C, Bhuvaneshwar K, Gusev Y, Mimori K, Menter D, Sen S, Matsuyama T, Uetake H, Vasilescu C, Kopetz S, Parker-Thornburg J, Taguchi A, Hanash SM, Girnita L, Slaby O, Goel A, Varani G, Gagea M, Li C, Ajani JA, Calin GA, Knutsen E. The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling. Gastroenterology. 2020 12; 159(6):2146-2162.e33. PMID: 32805281; PMCID: PMC7725986.
      Citations: 25     Fields:    Translation:HumansAnimalsCells
    78. Kato T, Fahrmann JF, Hanash SM, Vykoukal J. Extracellular Vesicles Mediate B Cell Immune Response and Are a Potential Target for Cancer Therapy. Cells. 2020 06 22; 9(6). PMID: 32580358; PMCID: PMC7349483.
      Citations: 8     Fields:    Translation:HumansCells
    79. Liu Y, Kaur S, Huang Y, Fahrmann JF, Rinaudo JA, Hanash SM, Batra SK, Singhi AD, Brand RE, Maitra A, Haab BB. Biomarkers and Strategy to Detect Preinvasive and Early Pancreatic Cancer: State of the Field and the Impact of the EDRN. Cancer Epidemiol Biomarkers Prev. 2020 12; 29(12):2513-2523. PMID: 32532830; PMCID: PMC7710622.
      Citations: 2     Fields:    Translation:Humans
    80. Srivastava S, Hanash S. Pan-Cancer Early Detection: Hype or Hope? Cancer Cell. 2020 07 13; 38(1):23-24. PMID: 32531269.
      Citations: 3     Fields:    Translation:HumansPHPublic Health
    81. Inamoto Y, Martin PJ, Lee SJ, Momin AA, Tabellini L, Onstad LE, Pidala J, Flowers MED, Lawler RL, Katayama H, Hanash S, Hansen JA. Dickkopf-related protein 3 is a novel biomarker for chronic GVHD after allogeneic hematopoietic cell transplantation. Blood Adv. 2020 06 09; 4(11):2409-2417. PMID: 32492155; PMCID: PMC7284089.
      Citations: 4     Fields:    Translation:HumansCells
    82. Zheng J, Hoffman KL, Chen JS, Shivappa N, Sood A, Browman GJ, Dirba DD, Hanash S, Wei P, Hebert JR, Petrosino JF, Schembre SM, Daniel CR. Dietary inflammatory potential in relation to the gut microbiome: results from a cross-sectional study. Br J Nutr. 2020 11 14; 124(9):931-942. PMID: 32475373; PMCID: PMC7554089.
      Citations: 14     Fields:    Translation:Humans
    83. Fahrmann JF, Vykoukal J, Fleury A, Tripathi S, Dennison JB, Murage E, Wang P, Yu CY, Capello M, Creighton CJ, Do KA, Long JP, Irajizad E, Peterson C, Katayama H, Disis ML, Arun B, Hanash S. Association Between Plasma Diacetylspermine and Tumor Spermine Synthase With Outcome in Triple-Negative Breast Cancer. J Natl Cancer Inst. 2020 06 01; 112(6):607-616. PMID: 31503278; PMCID: PMC7301069.
      Citations: 15     Fields:    Translation:HumansAnimals
    84. Fahrmann JF, Mao X, Irajizad E, Katayama H, Capello M, Tanaka I, Kato T, Wistuba II, Maitra A, Ostrin EJ, Hanash SM, Vykoukal J. Plasma-Derived Extracellular Vesicles Convey Protein Signatures that Reflect Pathophysiology in Lung and Pancreatic Adenocarcinomas. Cancers (Basel). 2020 May 02; 12(5). PMID: 32370304; PMCID: PMC7281335.
      Citations: 10     
    85. Ajani JA, Xu Y, Huo L, Wang R, Li Y, Wang Y, Pizzi MP, Scott A, Harada K, Ma L, Yao X, Jin J, Zhao W, Dong X, Badgwell BD, Shanbhag N, Tatlonghari G, Estrella JS, Roy-Chowdhuri S, Kobayashi M, Vykoukal JV, Hanash SM, Calin GA, Peng G, Lee JS, Johnson RL, Wang Z, Wang L, Song S. YAP1 mediates gastric adenocarcinoma peritoneal metastases that are attenuated by YAP1 inhibition. Gut. 2021 01; 70(1):55-66. PMID: 32345613; PMCID: PMC9832914.
      Citations: 14     Fields:    Translation:HumansAnimals
    86. Rowan CM, Pike F, Cooke KR, Krance R, Carpenter PA, Duncan C, Jacobsohn DA, Bollard CM, Cruz CRY, Malatpure A, Farag SS, Renbarger J, Liu H, Bakoyannis G, Hanash S, Paczesny S. Assessment of ST2 for risk of death following graft-versus-host disease in pediatric and adult age groups. Blood. 2020 04 23; 135(17):1428-1437. PMID: 31972009; PMCID: PMC7180084.
      Citations: 7     Fields:    Translation:Humans
    87. Mandili G, Follia L, Ferrero G, Katayama H, Hong W, Momin AA, Capello M, Giordano D, Spadi R, Satolli MA, Hanash SM, Cordero F, Novelli F, Evangelista A. Immune-Complexome Analysis Identifies Immunoglobulin-Bound Biomarkers That Predict the Response to Chemotherapy of Pancreatic Cancer Patients. Cancers (Basel). 2020 Mar 21; 12(3). PMID: 32245227; PMCID: PMC7140049.
      Citations: 4     
    88. Taguchi A, Fahrmann JF, Hanash SM. A Promising CPS1 Inhibitor Keeping Ammonia from Fueling Cancer. Cell Chem Biol. 2020 03 19; 27(3):253-254. PMID: 32200911.
      Citations:    Fields:    Translation:Humans
    89. Kobayashi M, Katayama H, Irajizad E, Vykoukal JV, Fahrmann JF, Kundnani DL, Yu CY, Cai Y, Hsiao FC, Yang WL, Lu Z, Celestino J, Long JP, Do KA, Lu KH, Ladd JJ, Urban N, Bast RC, Hanash SM. Proteome Profiling Uncovers an Autoimmune Response Signature That Reflects Ovarian Cancer Pathogenesis. Cancers (Basel). 2020 Feb 19; 12(2). PMID: 32092936; PMCID: PMC7072578.
      Citations: 6     
    90. Pichler M, Rodriguez-Aguayo C, Nam SY, Dragomir MP, Bayraktar R, Anfossi S, Knutsen E, Ivan C, Fuentes-Mattei E, Lee SK, Ling H, Catela Ivkovic T, Huang G, Huang L, Okugawa Y, Katayama H, Taguchi A, Bayraktar E, Bhattacharya R, Amero P, He WR, Tran AM, Vychytilova-Faltejskova P, Klec C, Bonilla DL, Zhang X, Kapitanovic S, Loncar B, Wang Z, Cristini V, Hanash SM, Bar-Eli M, Lanza G, Slaby O, Goel A, Rigoutsos I, Lopez-Berestein G, Calin GA, Gaf? R. Therapeutic potential of FLANC, a novel primate-specific long non-coding RNA in colorectal cancer. Gut. 2020 10; 69(10):1818-1831. PMID: 31988194; PMCID: PMC7382985.
      Citations: 44     Fields:    Translation:HumansAnimals
    91. Kobayashi M, Katayama H, Fahrmann JF, Hanash SM. Development of autoantibody signatures for common cancers. Semin Immunol. 2020 02; 47:101388. PMID: 31924500.
      Citations: 6     Fields:    Translation:Humans
    92. Zhang X, Browman G, Siu W, Basen-Engquist KM, Hanash SM, Hoffman KL, Okhuysen PC, Scheet P, Petrosino JF, Kopetz S, Daniel CR. The BE GONE trial study protocol: a randomized crossover dietary intervention of dry beans targeting the gut microbiome of overweight and obese patients with a history of colorectal polyps or cancer. BMC Cancer. 2019 Dec 18; 19(1):1233. PMID: 31852462; PMCID: PMC6921460.
      Citations: 3     Fields:    Translation:HumansCTClinical Trials
    93. Hanash SM, Feng Z, Taguchi A. Failure to Disclose Potential Conflict of Interest-Letter of Explanation. JAMA Oncol. 2019 12 01; 5(12):1811. PMID: 31725855.
      Citations: 1     Fields:    Translation:Humans
    94. Yang WL, Lu Z, Guo J, Fellman BM, Ning J, Lu KH, Menon U, Kobayashi M, Hanash SM, Celestino J, Skates SJ, Bast RC. Human epididymis protein 4 antigen-autoantibody complexes complement cancer antigen 125 for detecting early-stage ovarian cancer. Cancer. 2020 02 15; 126(4):725-736. PMID: 31714597; PMCID: PMC6992519.
      Citations: 9     Fields:    Translation:HumansPHPublic Health
    95. Riquelme E, Zhang Y, Zhang L, Montiel M, Zoltan M, Dong W, Quesada P, Sahin I, Chandra V, San Lucas A, Scheet P, Xu H, Hanash SM, Feng L, Burks JK, Do KA, Peterson CB, Nejman D, Tzeng CD, Kim MP, Sears CL, Ajami N, Petrosino J, Wood LD, Maitra A, Straussman R, Katz M, White JR, Jenq R, Wargo J, McAllister F. Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes. Cell. 2019 08 08; 178(4):795-806.e12. PMID: 31398337; PMCID: PMC7288240.
      Citations: 280     Fields:    Translation:HumansAnimalsCells
    96. Kailass K, Sadovski O, Capello M, Kang Y, Fleming JB, Hanash SM, Beharry AA. Measuring human carboxylesterase 2 activity in pancreatic cancer patient-derived xenografts using a ratiometric fluorescent chemosensor. Chem Sci. 2019 Sep 28; 10(36):8428-8437. PMID: 31803422; PMCID: PMC6844279.
      Citations: 2     
    97. Chekouo T, Stingo FC, Class CA, Yan Y, Bohannan Z, Wei Y, Garcia-Manero G, Hanash S, Do KA. Investigating protein patterns in human leukemia cell line experiments: A Bayesian approach for extremely small sample sizes. Stat Methods Med Res. 2020 04; 29(4):1181-1196. PMID: 31172886.
      Citations: 1     Fields:    Translation:HumansCells
    98. Wang R, Song S, Harada K, Ghazanfari Amlashi F, Badgwell B, Pizzi MP, Xu Y, Zhao W, Dong X, Jin J, Wang Y, Scott A, Ma L, Huo L, Vicente D, Blum Murphy M, Shanbhag N, Tatlonghari G, Thomas I, Rogers J, Kobayashi M, Vykoukal J, Estrella JS, Roy-Chowdhuri S, Han G, Zhang S, Mao X, Song X, Zhang J, Gu J, Johnson RL, Calin GA, Peng G, Lee JS, Hanash SM, Futreal A, Wang Z, Wang L, Ajani JA. Multiplex profiling of peritoneal metastases from gastric adenocarcinoma identified novel targets and molecular subtypes that predict treatment response. Gut. 2020 01; 69(1):18-31. PMID: 31171626; PMCID: PMC6943252.
      Citations: 29     Fields:    Translation:Humans
    99. Bocci F, Tripathi SC, Vilchez Mercedes SA, George JT, Casabar JP, Wong PK, Hanash SM, Levine H, Jolly MK, Onuchic JN. NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial/mesenchymal phenotype. Integr Biol (Camb). 2019 06 01; 11(6):251-263. PMID: 31329868; PMCID: PMC6686740.
      Citations: 38     Fields:    Translation:HumansCells
    100. Liu X, Yue Z, Cao Y, Taylor L, Zhang Q, Choi SW, Hanash S, Ito S, Chen JY, Wu H, Paczesny S. Graft-Versus-Host Disease-Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology. JCO Precis Oncol. 2019; 3. PMID: 31406955; PMCID: PMC6690359.
      Citations: 2     Fields:    
    101. Katayama H, Tsou P, Kobayashi M, Capello M, Wang H, Esteva F, Disis ML, Hanash S. A plasma protein derived TGF? signature is a prognostic indicator in triple negative breast cancer. NPJ Precis Oncol. 2019; 3:10. PMID: 30963111; PMCID: PMC6445093.
      Citations: 8     
    102. Fahrmann JF, Bantis LE, Capello M, Scelo G, Dennison JB, Patel N, Murage E, Vykoukal J, Kundnani DL, Foretova L, Fabianova E, Holcatova I, Janout V, Feng Z, Yip-Schneider M, Zhang J, Brand R, Taguchi A, Maitra A, Brennan P, Max Schmidt C, Hanash S. A Plasma-Derived Protein-Metabolite Multiplexed Panel for Early-Stage Pancreatic Cancer. J Natl Cancer Inst. 2019 04 01; 111(4):372-379. PMID: 30137376; PMCID: PMC6449169.
      Citations: 44     Fields:    Translation:HumansCells
    103. Yao W, Rose JL, Wang W, Seth S, Jiang H, Taguchi A, Liu J, Yan L, Kapoor A, Hou P, Chen Z, Wang Q, Nezi L, Xu Z, Yao J, Hu B, Pettazzoni PF, Ho IL, Feng N, Ramamoorthy V, Jiang S, Deng P, Ma GJ, Den P, Tan Z, Zhang SX, Wang H, Wang YA, Deem AK, Fleming JB, Carugo A, Heffernan TP, Maitra A, Viale A, Ying H, Hanash S, DePinho RA, Draetta GF. Syndecan 1 is a critical mediator of macropinocytosis in pancreatic cancer. Nature. 2019 04; 568(7752):410-414. PMID: 30918400; PMCID: PMC6661074.
      Citations: 53     Fields:    Translation:HumansAnimalsCells
    104. Ferrero G, Beccuti M, Katayama H, Hong W, Momin AA, Capello M, Hanash SM, Cordero F, Follia L, Mandili G, Giordano D, Spadi R, Satolli MA, Evangelista A, Novelli F. Integrative Analysis of Novel Metabolic Subtypes in Pancreatic Cancer Fosters New Prognostic Biomarkers. Front Oncol. 2019; 9:115. PMID: 30873387; PMCID: PMC6400843.
      Citations: 18     
    105. Yan Y, Sun N, Wang H, Kobayashi M, Ladd JJ, Long JP, Lo KC, Patel J, Sullivan E, Albert T, Goodman GE, Do KA, Hanash SM. Whole Genome-Derived Tiled Peptide Arrays Detect Prediagnostic Autoantibody Signatures in Non-Small-Cell Lung Cancer. Cancer Res. 2019 04 01; 79(7):1549-1557. PMID: 30723114; PMCID: PMC6445725.
      Citations: 7     Fields:    Translation:Humans
    106. Jia D, George JT, Tripathi SC, Kundnani DL, Lu M, Hanash SM, Jolly MK, Levine H, Onuchic JN. Testing the gene expression classification of the EMT spectrum. Phys Biol. 2019 01 18; 16(2):025002. PMID: 30557866; PMCID: PMC7179477.
      Citations: 19     Fields:    Translation:Cells
    107. Capello M, Vykoukal JV, Katayama H, Bantis LE, Wang H, Kundnani DL, Aguilar-Bonavides C, Aguilar M, Tripathi SC, Dhillon DS, Momin AA, Peters H, Katz MH, Alvarez H, Bernard V, Ferri-Borgogno S, Brand R, Adler DG, Firpo MA, Mulvihill SJ, Molldrem JJ, Feng Z, Taguchi A, Maitra A, Hanash SM. Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity. Nat Commun. 2019 01 16; 10(1):254. PMID: 30651550; PMCID: PMC6335434.
      Citations: 58     Fields:    Translation:HumansCells
    108. Integrative Analysis of Lung Cancer Etiology and Risk (INTEGRAL) Consortium for Early Detection of L, Guida F, Sun N, Bantis LE, Muller DC, Li P, Taguchi A, Dhillon D, Kundnani DL, Patel NJ, Yan Q, Byrnes G, Moons KGM, Panico S, Agnoli C, Vineis P, Palli D, Bueno-de-Mesquita B, Peeters PH, Agudo A, Huerta JM, Dorronsoro M, Travis RC, Byrne KS, Boeing H, Steffen A, Kaaks R, Trichopoulou A, Lagiou P, La Vecchia C, Severi G, Tsilidis K, Riboli E, Goodman GE, Feng Z, Brennan P, Johansson M, Hanash SM, Tj?nneland A, Barranco MR, Ardanaz E, H?sing A, Boutron-Ruault MC, Sandanger TM, Weiderpass E, N?st TH, Grankvist K, Johansson M. Assessment of Lung Cancer Risk on the Basis of a Biomarker Panel of Circulating Proteins. JAMA Oncol. 2018 10 01; 4(10):e182078. PMID: 30003238; PMCID: PMC6233784.
      Citations: 49     Fields:    Translation:HumansPHPublic Health
    109. Jolly MK, Somarelli JA, Sheth M, Biddle A, Tripathi SC, Armstrong AJ, Hanash SM, Bapat SA, Rangarajan A, Levine H. Hybrid epithelial/mesenchymal phenotypes promote metastasis and therapy resistance across carcinomas. Pharmacol Ther. 2019 02; 194:161-184. PMID: 30268772.
      Citations: 111     Fields:    Translation:HumansAnimalsCells
    110. Tripathi SC, Fahrmann JF, Vykoukal JV, Dennison JB, Hanash SM. Targeting metabolic vulnerabilities of cancer: Small molecule inhibitors in clinic. Cancer Rep (Hoboken). 2019 02; 2(1):e1131. PMID: 32721114; PMCID: PMC7941539.
      Citations: 3     Fields:    Translation:Humans
    111. Jolly MK, Preca BT, Tripathi SC, Jia D, George JT, Hanash SM, Maurer J, Levine H, Brabletz T, Stemmler MP. Interconnected feedback loops among ESRP1, HAS2, and CD44 regulate epithelial-mesenchymal plasticity in cancer. APL Bioeng. 2018 Sep; 2(3):031908. PMID: 31069317; PMCID: PMC6324214.
      Citations: 34     
    112. Wang T, Fahrmann JF, Lee H, Li YJ, Tripathi SC, Yue C, Zhang C, Lifshitz V, Song J, Yuan Y, Somlo G, Jandial R, Ann D, Hanash S, Jove R, Yu H. JAK/STAT3-Regulated Fatty Acid ?-Oxidation Is Critical for Breast Cancer Stem Cell Self-Renewal and Chemoresistance. Cell Metab. 2018 Jun 05; 27(6):1357. PMID: 29874570; PMCID: PMC6116734.
      Citations: 48     Fields:    
    113. Hanash SM, Ostrin EJ, Fahrmann JF. Blood based biomarkers beyond genomics for lung cancer screening. Transl Lung Cancer Res. 2018 Jun; 7(3):327-335. PMID: 30050770; PMCID: PMC6037962.
      Citations: 14     
    114. Khosravi N, Caetano MS, Cumpian AM, Unver N, Daliri S, Hernandez BJ, Gutierrez BA, Evans SE, Hanash S, Alekseev AM, Yang Y, Chang SH, Nurieva R, Kadara H, Chen J, Ostrin EJ, Moghaddam SJ, De la Garza Ramos C, Noble O. IL22 Promotes Kras-Mutant Lung Cancer by Induction of a Protumor Immune Response and Protection of Stemness Properties. Cancer Immunol Res. 2018 07; 6(7):788-797. PMID: 29764837; PMCID: PMC6030457.
      Citations: 33     Fields:    Translation:HumansAnimalsCells
    115. Ostrin EJ, Little DR, Gerner-Mauro KN, Sumner EA, Holt SE, Forcioli-Conti N, Akiyama H, Hanash SM, Kimura S, Huang SXL, Chen J, R?os-Corzo R, Ambrosio E. ?-Catenin maintains lung epithelial progenitors after lung specification. Development. 2018 03 09; 145(5). PMID: 29440304; PMCID: PMC5868997.
      Citations: 21     Fields:    Translation:AnimalsCells
    116. Cohen JD, Li L, Wang Y, Thoburn C, Afsari B, Danilova L, Douville C, Javed AA, Wong F, Mattox A, Hruban RH, Wolfgang CL, Goggins MG, Dal Molin M, Wang TL, Roden R, Klein AP, Ptak J, Dobbyn L, Schaefer J, Silliman N, Popoli M, Vogelstein JT, Browne JD, Schoen RE, Brand RE, Tie J, Gibbs P, Wong HL, Mansfield AS, Jen J, Hanash SM, Falconi M, Allen PJ, Zhou S, Bettegowda C, Diaz LA, Tomasetti C, Kinzler KW, Vogelstein B, Lennon AM, Papadopoulos N. Detection and localization of surgically resectable cancers with a multi-analyte blood test. Science. 2018 Feb 23; 359(6378):926-930. PMID: 29348365; PMCID: PMC6080308.
      Citations: 689     Fields:    Translation:Humans
    117. Shiels MS, Kirk GD, Drummond MB, Dhillon D, Hanash SM, Taguchi A, Engels EA. HIV Infection and Circulating Levels of Prosurfactant Protein B and Surfactant Protein D. J Infect Dis. 2018 01 17; 217(3):413-417. PMID: 29272472; PMCID: PMC5853828.
      Citations: 2     Fields:    Translation:HumansCells
    118. Castillo J, Bernard V, San Lucas FA, Allenson K, Capello M, Kim DU, Gascoyne P, Mulu FC, Stephens BM, Huang J, Wang H, Momin AA, Jacamo RO, Katz M, Wolff R, Javle M, Varadhachary G, Wistuba II, Hanash S, Maitra A, Alvarez H. Surfaceome profiling enables isolation of cancer-specific exosomal cargo in liquid biopsies from pancreatic cancer patients. Ann Oncol. 2018 01 01; 29(1):223-229. PMID: 29045505; PMCID: PMC6248757.
      Citations: 70     Fields:    Translation:HumansCells
    119. Unver N, Delgado O, Zeleke K, Cumpian A, Tang X, Caetano MS, Wang H, Katayama H, Yu H, Szabo E, Wistuba II, Moghaddam SJ, Hanash SM, Ostrin EJ. Reduced IL-6 levels and tumor-associated phospho-STAT3 are associated with reduced tumor development in a mouse model of lung cancer chemoprevention with myo-inositol. Int J Cancer. 2018 04 01; 142(7):1405-1417. PMID: 29134640; PMCID: PMC5805587.
      Citations: 21     Fields:    Translation:HumansAnimalsCells
    120. Wang T, Fahrmann JF, Lee H, Li YJ, Tripathi SC, Yue C, Zhang C, Lifshitz V, Song J, Yuan Y, Somlo G, Jandial R, Ann D, Hanash S, Jove R, Yu H. JAK/STAT3-Regulated Fatty Acid ?-Oxidation Is Critical for Breast Cancer Stem Cell Self-Renewal and Chemoresistance. Cell Metab. 2018 01 09; 27(1):136-150.e5. PMID: 29249690; PMCID: PMC5777338.
      Citations: 207     Fields:    Translation:HumansAnimalsCells
    121. Hanash S. The Wide World of Molecular Profiling for Tumor Classification. Clin Chem. 2018 04; 64(4):743-744. PMID: 29097505; PMCID: PMC6425933.
      Citations: 1     Fields:    Translation:Humans
    122. Jia D, Jolly MK, Tripathi SC, Den Hollander P, Huang B, Lu M, Celiktas M, Ben-Jacob E, Hanash SM, Mani SA, Levine H, Ramirez-Pe?a E, Onuchic JN. Distinguishing mechanisms underlying EMT tristability. Cancer Converg. 2017; 1(1):2. PMID: 29623961; PMCID: PMC5876698.
      Citations: 35     
    123. Bocci F, Jolly MK, Tripathi SC, Aguilar M, Hanash SM, Levine H, Onuchic JN. Numb prevents a complete epithelial-mesenchymal transition by modulating Notch signalling. J R Soc Interface. 2017 11; 14(136). PMID: 29187638; PMCID: PMC5721160.
      Citations: 49     Fields:    Translation:HumansCells
    124. Vykoukal J, Sun N, Aguilar-Bonavides C, Katayama H, Tanaka I, Fahrmann JF, Capello M, Fujimoto J, Aguilar M, Wistuba II, Taguchi A, Ostrin EJ, Hanash SM. Plasma-derived extracellular vesicle proteins as a source of biomarkers for lung adenocarcinoma. Oncotarget. 2017 Nov 10; 8(56):95466-95480. PMID: 29221141; PMCID: PMC5707035.
      Citations: 35     Fields:    
    125. Mbofung RM, McKenzie JA, Malu S, Zhang M, Peng W, Liu C, Kuiatse I, Tieu T, Williams L, Devi S, Ashkin E, Xu C, Huang L, Zhang M, Talukder AH, Tripathi SC, Khong H, Satani N, Muller FL, Roszik J, Heffernan T, Allison JP, Lizee G, Hanash SM, Proia D, Amaria R, Davis RE, Hwu P. HSP90 inhibition enhances cancer immunotherapy by upregulating interferon response genes. Nat Commun. 2017 09 06; 8(1):451. PMID: 28878208; PMCID: PMC5587668.
      Citations: 45     Fields:    Translation:HumansAnimalsCells
    126. Cohen JD, Javed AA, Thoburn C, Wong F, Tie J, Gibbs P, Schmidt CM, Yip-Schneider MT, Allen PJ, Schattner M, Brand RE, Singhi AD, Petersen GM, Hong SM, Kim SC, Falconi M, Doglioni C, Weiss MJ, Ahuja N, He J, Makary MA, Maitra A, Hanash SM, Dal Molin M, Wang Y, Li L, Ptak J, Dobbyn L, Schaefer J, Silliman N, Popoli M, Goggins MG, Hruban RH, Wolfgang CL, Klein AP, Tomasetti C, Papadopoulos N, Kinzler KW, Vogelstein B, Lennon AM. Combined circulating tumor DNA and protein biomarker-based liquid biopsy for the earlier detection of pancreatic cancers. Proc Natl Acad Sci U S A. 2017 09 19; 114(38):10202-10207. PMID: 28874546; PMCID: PMC5617273.
      Citations: 178     Fields:    Translation:Humans
    127. Basourakos SP, Davis JW, Chapin BF, Ward JF, Pettaway CA, Pisters LL, Navai N, Achim MF, Wang X, Chen HC, Choi S, Kuban D, Troncoso P, Hanash S, Thompson TC, Kim J. Baseline and longitudinal plasma caveolin-1 level as a biomarker in active surveillance for early-stage prostate cancer. BJU Int. 2018 01; 121(1):69-76. PMID: 28710901; PMCID: PMC6126916.
      Citations: 6     Fields:    Translation:Humans
    128. Kodama M, Kodama T, Newberg JY, Katayama H, Kobayashi M, Hanash SM, Yoshihara K, Wei Z, Tien JC, Rangel R, Hashimoto K, Mabuchi S, Sawada K, Kimura T, Copeland NG, Jenkins NA. In vivo loss-of-function screens identify KPNB1 as a new druggable oncogene in epithelial ovarian cancer. Proc Natl Acad Sci U S A. 2017 08 29; 114(35):E7301-E7310. PMID: 28811376; PMCID: PMC5584430.
      Citations: 35     Fields:    Translation:HumansCells
    129. Schliekelman MJ, Creighton CJ, Baird BN, Chen Y, Banerjee P, Bota-Rabassedas N, Ahn YH, Roybal JD, Chen F, Zhang Y, Mishra DK, Kim MP, Liu X, Mino B, Villalobos P, Rodriguez-Canales J, Behrens C, Wistuba II, Hanash SM, Kurie JM. Thy-1+ Cancer-associated Fibroblasts Adversely Impact Lung Cancer Prognosis. Sci Rep. 2017 07 25; 7(1):6478. PMID: 28744021; PMCID: PMC5527099.
      Citations: 17     Fields:    Translation:HumansAnimalsCells
    130. Tripathi SC, Fahrmann JF, Celiktas M, Aguilar M, Marini KD, Jolly MK, Katayama H, Wang H, Murage EN, Dennison JB, Watkins DN, Levine H, Ostrin EJ, Taguchi A, Hanash SM. MCAM Mediates Chemoresistance in Small-Cell Lung Cancer via the PI3K/AKT/SOX2 Signaling Pathway. Cancer Res. 2017 08 15; 77(16):4414-4425. PMID: 28646020; PMCID: PMC5880621.
      Citations: 43     Fields:    Translation:HumansAnimalsCells
    131. Jolly MK, Tripathi SC, Somarelli JA, Hanash SM, Levine H. Epithelial/mesenchymal plasticity: how have quantitative mathematical models helped improve our understanding? Mol Oncol. 2017 07; 11(7):739-754. PMID: 28548388; PMCID: PMC5496493.
      Citations: 32     Fields:    Translation:HumansAnimals
    132. Kerros C, Tripathi SC, Zha D, Mehrens JM, Sergeeva A, Philips AV, Qiao N, Peters HL, Katayama H, Sukhumalchandra P, Ruisaard KE, Perakis AA, St John LS, Lu S, Mittendorf EA, Clise-Dwyer K, Herrmann AC, Alatrash G, Toniatti C, Hanash SM, Ma Q, Molldrem JJ. Neuropilin-1 mediates neutrophil elastase uptake and cross-presentation in breast cancer cells. J Biol Chem. 2017 06 16; 292(24):10295-10305. PMID: 28468826; PMCID: PMC5473232.
      Citations: 18     Fields:    Translation:HumansCells
    133. Inamoto Y, Martin PJ, Paczesny S, Tabellini L, Momin AA, Mumaw CL, Flowers MED, Lee SJ, Carpenter PA, Storer BE, Hanash S, Hansen JA. Association of Plasma CD163 Concentration with De Novo-Onset Chronic Graft-versus-Host Disease. Biol Blood Marrow Transplant. 2017 Aug; 23(8):1250-1256. PMID: 28455006; PMCID: PMC5511087.
      Citations: 22     Fields:    Translation:HumansCellsCTClinical Trials
    134. Allenson K, Castillo J, San Lucas FA, Scelo G, Kim DU, Bernard V, Davis G, Kumar T, Katz M, Overman MJ, Foretova L, Fabianova E, Holcatova I, Janout V, Meric-Bernstam F, Gascoyne P, Wistuba I, Varadhachary G, Brennan P, Hanash S, Li D, Maitra A, Alvarez H. High prevalence of mutant KRAS in circulating exosome-derived DNA from early-stage pancreatic cancer patients. Ann Oncol. 2017 04 01; 28(4):741-747. PMID: 28104621; PMCID: PMC5834026.
      Citations: 149     Fields:    Translation:HumansCells
    135. Capello M, Bantis LE, Scelo G, Zhao Y, Li P, Dhillon DS, Patel NJ, Kundnani DL, Wang H, Abbruzzese JL, Maitra A, Tempero MA, Brand R, Firpo MA, Mulvihill SJ, Katz MH, Brennan P, Feng Z, Taguchi A, Hanash SM. Sequential Validation of Blood-Based Protein Biomarker Candidates for Early-Stage Pancreatic Cancer. J Natl Cancer Inst. 2017 04 01; 109(4). PMID: 28376157; PMCID: PMC5441297.
      Citations: 59     Fields:    Translation:Humans
    136. Peters HL, Tripathi SC, Kerros C, Katayama H, Garber HR, St John LS, Federico L, Meraz IM, Roth JA, Sepesi B, Majidi M, Ruisaard K, Clise-Dwyer K, Roszik J, Gibbons DL, Heymach JV, Swisher SG, Bernatchez C, Alatrash G, Hanash S, Molldrem JJ. Serine Proteases Enhance Immunogenic Antigen Presentation on Lung Cancer Cells. Cancer Immunol Res. 2017 04; 5(4):319-329. PMID: 28254787; PMCID: PMC5673248.
      Citations: 6     Fields:    Translation:HumansCells
    137. Tanaka I, Tripathi SC, Fahrmann JF, Aguilar-Bonavides C, Villalobos P, Delgado O, Dhillon D, Dennison JB, Ostrin EJ, Wang H, Behrens C, Do KA, Gazdar AF, Hanash SM, Taguchi A, ?eliktas M. Role of CPS1 in Cell Growth, Metabolism and Prognosis in LKB1-Inactivated Lung Adenocarcinoma. J Natl Cancer Inst. 2017 03 01; 109(3):1-9. PMID: 28376202; PMCID: PMC5198847.
      Citations: 39     Fields:    Translation:HumansCells
    138. Mustachio LM, Lu Y, Tafe LJ, Memoli V, Rodriguez-Canales J, Mino B, Villalobos PA, Wistuba I, Katayama H, Hanash SM, Roszik J, Kawakami M, Cho KJ, Hancock JF, Chinyengetere F, Hu S, Liu X, Freemantle SJ, Dmitrovsky E. Deubiquitinase USP18 Loss Mislocalizes and Destabilizes KRAS in Lung Cancer. Mol Cancer Res. 2017 07; 15(7):905-914. PMID: 28242811; PMCID: PMC5635999.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    139. Sun N, Taguchi A, Hanash S. Switching Roles of TGF-? in Cancer Development: Implications for Therapeutic Target and Biomarker Studies. J Clin Med. 2016 Nov 30; 5(12). PMID: 27916872; PMCID: PMC5184782.
      Citations: 10     
    140. Rho JH, Ladd JJ, Li CI, Potter JD, Zhang Y, Shelley D, Shibata D, Coppola D, Yamada H, Toyoda H, Tada T, Kumada T, Brenner DE, Hanash SM, Lampe PD. Protein and glycomic plasma markers for early detection of adenoma and colon cancer. Gut. 2018 03; 67(3):473-484. PMID: 27821646; PMCID: PMC5420499.
      Citations: 25     Fields:    Translation:Humans
    141. Chen Y, Guo H, Terajima M, Banerjee P, Liu X, Yu J, Momin AA, Katayama H, Hanash SM, Burns AR, Fields GB, Yamauchi M, Kurie JM. Lysyl Hydroxylase 2 Is Secreted by Tumor Cells and Can Modify Collagen in the Extracellular Space. J Biol Chem. 2016 Dec 09; 291(50):25799-25808. PMID: 27803159; PMCID: PMC5207055.
      Citations: 31     Fields:    Translation:HumansAnimalsCells
    142. Tsou P, Katayama H, Ostrin EJ, Hanash SM. The Emerging Role of B Cells in Tumor Immunity. Cancer Res. 2016 10 01; 76(19):5597-5601. PMID: 27634765.
      Citations: 131     Fields:    Translation:HumansCells
    143. Zhang C, Suo J, Katayama H, Wei Y, Garcia-Manero G, Hanash S. Quantitative proteomic analysis of histone modifications in decitabine sensitive and resistant leukemia cell lines. Clin Proteomics. 2016; 13:14. PMID: 27382363; PMCID: PMC4932764.
      Citations: 5     
    144. Fu R, Wang P, Ma W, Taguchi A, Wong CH, Zhang Q, Gazdar A, Hanash SM, Zhou Q, Zhong H, Feng Z. A statistical method for detecting differentially expressed SNVs based on next-generation RNA-seq data. Biometrics. 2017 03; 73(1):42-51. PMID: 27276420; PMCID: PMC5151178.
      Citations:    Fields:    Translation:Humans
    145. Jolly MK, Tripathi SC, Jia D, Mooney SM, Celiktas M, Hanash SM, Mani SA, Pienta KJ, Ben-Jacob E, Levine H. Stability of the hybrid epithelial/mesenchymal phenotype. Oncotarget. 2016 May 10; 7(19):27067-84. PMID: 27008704; PMCID: PMC5053633.
      Citations: 173     Fields:    Translation:HumansCells
    146. Li W, Liu L, Gomez A, Zhang J, Ramadan A, Zhang Q, Choi SW, Zhang P, Greenson JK, Liu C, Jiang D, Virts E, Kelich SL, Chu HW, Flynn R, Blazar BR, Hanenberg H, Hanash S, Paczesny S. Proteomics analysis reveals a Th17-prone cell population in presymptomatic graft-versus-host disease. JCI Insight. 2016 May 05; 1(6). PMID: 27195312; PMCID: PMC4868256.
      Citations: 24     Fields:    
    147. Caetano MS, Zhang H, Cumpian AM, Gong L, Unver N, Ostrin EJ, Daliri S, Chang SH, Ochoa CE, Hanash S, Behrens C, Wistuba II, Sternberg C, Kadara H, Ferreira CG, Watowich SS, Moghaddam SJ. IL6 Blockade Reprograms the Lung Tumor Microenvironment to Limit the Development and Progression of K-ras-Mutant Lung Cancer. Cancer Res. 2016 06 01; 76(11):3189-99. PMID: 27197187; PMCID: PMC4891282.
      Citations: 83     Fields:    Translation:HumansAnimalsCells
    148. Wang OH, Azizian N, Guo M, Capello M, Deng D, Zang F, Fry J, Katz MH, Fleming JB, Lee JE, Wolff RA, Hanash S, Wang H, Maitra A. Prognostic and Functional Significance of MAP4K5 in Pancreatic Cancer. PLoS One. 2016; 11(3):e0152300. PMID: 27023625; PMCID: PMC4811546.
      Citations: 13     Fields:    Translation:HumansCells
    149. Tripathi SC, Peters HL, Taguchi A, Katayama H, Wang H, Momin A, Jolly MK, Celiktas M, Rodriguez-Canales J, Liu H, Behrens C, Wistuba II, Ben-Jacob E, Levine H, Molldrem JJ, Hanash SM, Ostrin EJ. Immunoproteasome deficiency is a feature of non-small cell lung cancer with a mesenchymal phenotype and is associated with a poor outcome. Proc Natl Acad Sci U S A. 2016 Mar 15; 113(11):E1555-64. PMID: 26929325; PMCID: PMC4801290.
      Citations: 77     Fields:    Translation:HumansCells
    150. Redis RS, Vela LE, Lu W, Ferreira de Oliveira J, Ivan C, Rodriguez-Aguayo C, Adamoski D, Pasculli B, Taguchi A, Chen Y, Fernandez AF, Valledor L, Van Roosbroeck K, Chang S, Shah M, Kinnebrew G, Han L, Atlasi Y, Cheung LH, Huang GY, Monroig P, Ramirez MS, Catela Ivkovic T, Van L, Ling H, Kapitanovic S, Lanza G, Bankson JA, Huang P, Lai SY, Bast RC, Rosenblum MG, Radovich M, Ivan M, Bartholomeusz G, Liang H, Fraga MF, Widger WR, Hanash S, Berindan-Neagoe I, Lopez-Berestein G, Ambrosio ALB, Gomes Dias SM, Calin GA, Gaf? R. Allele-Specific Reprogramming of Cancer Metabolism by the Long Non-coding RNA CCAT2. Mol Cell. 2016 Feb 18; 61(4):640. PMID: 28934601.
      Citations: 19     Fields:    
    151. Hanash S, Taguchi A, Wang H, Ostrin EJ. Deciphering the complexity of the cancer proteome for diagnostic applications. Expert Rev Mol Diagn. 2016; 16(4):399-405. PMID: 26694525.
      Citations: 3     Fields:    Translation:Humans
    152. Redis RS, Vela LE, Lu W, Ivan C, Rodriguez-Aguayo C, Pasculli B, Taguchi A, Chen Y, Fernandez AF, Valledor L, Van Roosbroeck K, Chang S, Shah M, Kinnebrew G, Han L, Atlasi Y, Cheung LH, Huang GY, Monroig P, Ramirez MS, Catela Ivkovic T, Van L, Ling H, Kapitanovic S, Lanza G, Bankson JA, Huang P, Lai SY, Bast RC, Rosenblum MG, Radovich M, Ivan M, Bartholomeusz G, Liang H, Fraga MF, Widger WR, Hanash S, Berindan-Neagoe I, Lopez-Berestein G, Calin GA, Ferreira de Oliveira J, Adamoski D, Gaf? R, Ambrosio ALB, Gomes Dias SM. Allele-Specific Reprogramming of Cancer Metabolism by the Long Non-coding RNA CCAT2. Mol Cell. 2016 Feb 18; 61(4):520-534. PMID: 26853146; PMCID: PMC4982398.
      Citations: 76     Fields:    Translation:HumansCells
    153. Ruhaak LR, Stroble C, Dai J, Barnett M, Taguchi A, Goodman GE, Miyamoto S, Gandara D, Feng Z, Lebrilla CB, Hanash S. Serum Glycans as Risk Markers for Non-Small Cell Lung Cancer. Cancer Prev Res (Phila). 2016 Apr; 9(4):317-23. PMID: 26813970; PMCID: PMC4818659.
      Citations: 9     Fields:    Translation:Humans
    154. Lim SO, Li CW, Xia W, Lee HH, Chang SS, Shen J, Hsu JL, Raftery D, Djukovic D, Gu H, Chang WC, Wang HL, Chen ML, Huo L, Chen CH, Wu Y, Sahin A, Hanash SM, Hortobagyi GN, Hung MC. EGFR Signaling Enhances Aerobic Glycolysis in Triple-Negative Breast Cancer Cells to Promote Tumor Growth and Immune Escape. Cancer Res. 2016 Mar 01; 76(5):1284-96. PMID: 26759242; PMCID: PMC4775355.
      Citations: 87     Fields:    Translation:HumansAnimalsCells
    155. Pankova D, Chen Y, Terajima M, Schliekelman MJ, Baird BN, Fahrenholtz M, Sun L, Gill BJ, Vadakkan TJ, Kim MP, Ahn YH, Roybal JD, Liu X, Parra Cuentas ER, Rodriguez J, Wistuba II, Creighton CJ, Gibbons DL, Hicks JM, Dickinson ME, West JL, Grande-Allen KJ, Hanash SM, Yamauchi M, Kurie JM. Cancer-Associated Fibroblasts Induce a Collagen Cross-link Switch in Tumor Stroma. Mol Cancer Res. 2016 Mar; 14(3):287-95. PMID: 26631572; PMCID: PMC4794404.
      Citations: 67     Fields:    Translation:AnimalsCells
    156. Annesley T, Diamandis E, Bachmann L, Hanash S, Hart B, Javahery R, Singh R, Smith R. A Spectrum of Views on Clinical Mass Spectrometry. Clin Chem. 2016 Jan; 62(1):30-6. PMID: 26553793.
      Citations: 3     Fields:    Translation:Humans
    157. Taguchi A, Rho JH, Yan Q, Zhang Y, Zhao Y, Xu H, Tripathi SC, Wang H, Brenner DE, Kucherlapati M, Kucherlapati R, Boutin AT, Wang YA, DePinho RA, Feng Z, Lampe PD, Hanash SM. MAPRE1 as a plasma biomarker for early-stage colorectal cancer and adenomas. Cancer Prev Res (Phila). 2015 Nov; 8(11):1112-9. PMID: 26342024; PMCID: PMC4633385.
      Citations: 15     Fields:    Translation:HumansAnimalsCells
    158. Wikoff WR, Hanash S, DeFelice B, Miyamoto S, Barnett M, Zhao Y, Goodman G, Feng Z, Gandara D, Fiehn O, Taguchi A. Diacetylspermine Is a Novel Prediagnostic Serum Biomarker for Non-Small-Cell Lung Cancer and Has Additive Performance With Pro-Surfactant Protein B. J Clin Oncol. 2015 Nov 20; 33(33):3880-6. PMID: 26282655; PMCID: PMC4652011.
      Citations: 42     Fields:    Translation:Humans
    159. Akil A, Zhang Q, Mumaw CL, Raiker N, Yu J, Velez de Mendizabal N, Haneline LS, Robertson KA, Skiles J, Diaz-Ricart M, Renbarger J, Hanash S, Bies RR, Paczesny S, Carreras E. Biomarkers for Diagnosis and Prognosis of Sinusoidal Obstruction Syndrome after Hematopoietic Cell Transplantation. Biol Blood Marrow Transplant. 2015 Oct; 21(10):1739-45. PMID: 26172478; PMCID: PMC4568166.
      Citations: 31     Fields:    Translation:Humans
    160. Katayama H, Boldt C, Ladd JJ, Johnson MM, Chao T, Capello M, Suo J, Mao J, Manson JE, Prentice R, Esteva F, Wang H, Disis ML, Hanash S. An Autoimmune Response Signature Associated with the Development of Triple-Negative Breast Cancer Reflects Disease Pathogenesis. Cancer Res. 2015 Aug 15; 75(16):3246-54. PMID: 26088128; PMCID: PMC4676710.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    161. Capello M, Lee M, Wang H, Babel I, Katz MH, Fleming JB, Maitra A, Wang H, Tian W, Taguchi A, Hanash SM. Carboxylesterase 2 as a Determinant of Response to Irinotecan and Neoadjuvant FOLFIRINOX Therapy in Pancreatic Ductal Adenocarcinoma. J Natl Cancer Inst. 2015 Aug; 107(8). PMID: 26025324; PMCID: PMC4554193.
      Citations: 26     Fields:    Translation:HumansCells
    162. Miyamoto S, Taylor SL, Barupal DK, Taguchi A, Wohlgemuth G, Wikoff WR, Yoneda KY, Gandara DR, Hanash SM, Kim K, Fiehn O. Systemic Metabolomic Changes in Blood Samples of Lung Cancer Patients Identified by Gas Chromatography Time-of-Flight Mass Spectrometry. Metabolites. 2015 Apr 09; 5(2):192-210. PMID: 25859693; PMCID: PMC4495369.
      Citations: 25     
    163. Mischak H, Critselis E, Hanash S, Gallagher WM, Vlahou A, Ioannidis JP. Epidemiologic design and analysis for proteomic studies: a primer on -omic technologies. Am J Epidemiol. 2015 May 01; 181(9):635-47. PMID: 25792606.
      Citations: 12     Fields:    Translation:Humans
    164. Wang H, Hanash S. Mass spectrometry based proteomics for absolute quantification of proteins from tumor cells. Methods. 2015 Jun 15; 81:34-40. PMID: 25794949; PMCID: PMC4678004.
      Citations: 6     Fields:    Translation:HumansCells
    165. Suo J, Medina D, Herrera S, Zheng ZY, Jin L, Chamness GC, Contreras A, Gutierrez C, Hilsenbeck S, Umar A, Foekens JA, Hanash S, Schiff R, Zhang XH, Chang EC. Int6 reduction activates stromal fibroblasts to enhance transforming activity in breast epithelial cells. Cell Biosci. 2015; 5:10. PMID: 25774287; PMCID: PMC4359526.
      Citations: 5     
    166. Schliekelman MJ, Taguchi A, Zhu J, Dai X, Rodriguez J, Celiktas M, Zhang Q, Chin A, Wong CH, Wang H, McFerrin L, Selamat SA, Yang C, Kroh EM, Garg KS, Behrens C, Gazdar AF, Laird-Offringa IA, Tewari M, Wistuba II, Thiery JP, Hanash SM. Molecular portraits of epithelial, mesenchymal, and hybrid States in lung adenocarcinoma and their relevance to survival. Cancer Res. 2015 May 01; 75(9):1789-800. PMID: 25744723; PMCID: PMC4846295.
      Citations: 98     Fields:    Translation:HumansCells
    167. Taguchi A, Delgado O, Katayama H, Wang H, Gazdar AF, Hanash SM, Celiktas M. Proteomic signatures associated with p53 mutational status in lung adenocarcinoma. Proteomics. 2014 Dec; 14(23-24):2750-9. PMID: 25331784; PMCID: PMC4403731.
      Citations: 13     Fields:    Translation:Humans
    168. Lu M, Huang B, Hanash SM, Ben-Jacob E, Onuchic JN. Modeling putative therapeutic implications of exosome exchange between tumor and immune cells. Proc Natl Acad Sci U S A. 2014 Oct 07; 111(40):E4165-74. PMID: 25246552; PMCID: PMC4210007.
      Citations: 20     Fields:    Translation:HumansAnimalsCells
    169. Taguchi A, Taylor AD, Rodriguez J, Liu H, Ma X, Zhang Q, Wong CH, Chin A, Girard L, Behrens C, Lam WL, Lam S, Minna JD, Wistuba II, Gazdar AF, Hanash SM, Celiktas M. A search for novel cancer/testis antigens in lung cancer identifies VCX/Y genes, expanding the repertoire of potential immunotherapeutic targets. Cancer Res. 2014 Sep 01; 74(17):4694-705. PMID: 24970476; PMCID: PMC4398029.
      Citations: 22     Fields:    Translation:HumansCells
    170. Mao J, Ladd J, Gad E, Rastetter L, Johnson MM, Marzbani E, Childs JS, Lu H, Dang Y, Broussard E, Stanton SE, Hanash SM, Disis ML. Mining the pre-diagnostic antibody repertoire of TgMMTV-neu mice to identify autoantibodies useful for the early detection of human breast cancer. J Transl Med. 2014 May 10; 12:121. PMID: 24886063; PMCID: PMC4022541.
      Citations: 12     Fields:    Translation:HumansAnimals
    171. Hanash S, Schliekelman M. Proteomic profiling of the tumor microenvironment: recent insights and the search for biomarkers. Genome Med. 2014 Feb 27; 6(2):12. PMID: 24713112; PMCID: PMC3978437.
      Citations: 11     Fields:    
    172. Hanash SM, Taguchi A. Mouse to human blood-based cancer biomarker discovery strategies. Cold Spring Harb Protoc. 2014 Feb 01; 2014(2):144-9. PMID: 24173314.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    173. Peng G, Chun-Jen Lin C, Mo W, Dai H, Park YY, Kim SM, Peng Y, Mo Q, Siwko S, Hu R, Lee JS, Hennessy B, Hanash S, Mills GB, Lin SY. Genome-wide transcriptome profiling of homologous recombination DNA repair. Nat Commun. 2014; 5:3361. PMID: 24553445; PMCID: PMC4017859.
      Citations: 107     Fields:    Translation:HumansCells
    174. Prentice RL, Zhao S, Johnson M, Aragaki A, Hsia J, Jackson RD, Rossouw JE, Manson JE, Hanash SM. Proteomic risk markers for coronary heart disease and stroke: validation and mediation of randomized trial hormone therapy effects on these diseases. Genome Med. 2013; 5(12):112. PMID: 24373343; PMCID: PMC3971342.
      Citations: 12     Fields:    
    175. Sin DD, Tammemagi CM, Lam S, Barnett MJ, Duan X, Tam A, Auman H, Feng Z, Goodman GE, Hanash S, Taguchi A. Pro-surfactant protein B as a biomarker for lung cancer prediction. J Clin Oncol. 2013 Dec 20; 31(36):4536-43. PMID: 24248694; PMCID: PMC3871515.
      Citations: 27     Fields:    Translation:Humans
    176. Zhang S, Mercado-Uribe I, Hanash S, Liu J. iTRAQ-based proteomic analysis of polyploid giant cancer cells and budding progeny cells reveals several distinct pathways for ovarian cancer development. PLoS One. 2013; 8(11):e80120. PMID: 24348907; PMCID: PMC3858113.
      Citations: 41     Fields:    Translation:HumansAnimalsCells
    177. Zhang W, Soh J, Stastny V, Chen M, Sun H, Thu K, Rios JJ, Yang C, Marconett CN, Selamat SA, Laird-Offringa IA, Taguchi A, Hanash S, Shames D, Ma X, Zhang MQ, Lam WL, Gazdar A, Tam KW. CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer. J Thorac Oncol. 2013 Nov; 8(11):1378-88. PMID: 24077454; PMCID: PMC3951422.
      Citations: 34     Fields:    Translation:HumansCells
    178. Vander Lugt MT, Braun TM, Hanash S, Ritz J, Ho VT, Antin JH, Zhang Q, Wong CH, Wang H, Chin A, Harris AC, Levine JE, Choi SW, Couriel D, Reddy P, Ferrara JL, Paczesny S, Gomez A. ST2 as a marker for risk of therapy-resistant graft-versus-host disease and death. N Engl J Med. 2013 Aug 08; 369(6):529-39. PMID: 23924003; PMCID: PMC3943357.
      Citations: 179     Fields:    Translation:Humans
    179. Ruhaak LR, Nguyen UT, Stroble C, Taylor SL, Taguchi A, Hanash SM, Lebrilla CB, Kim K, Miyamoto S. Enrichment strategies in glycomics-based lung cancer biomarker development. Proteomics Clin Appl. 2013 Oct; 7(9-10):664-76. PMID: 23640812; PMCID: PMC3884000.
      Citations: 16     Fields:    Translation:HumansCells
    180. Taguchi A, Hanash S, Rundle A, McKeague IW, Tang D, Darakjy S, Gaziano JM, Sesso HD, Perera F. Circulating pro-surfactant protein B as a risk biomarker for lung cancer. Cancer Epidemiol Biomarkers Prev. 2013 Oct; 22(10):1756-61. PMID: 23897585; PMCID: PMC3866965.
      Citations: 11     Fields:    Translation:Humans
    181. Hansen JA, Hanash SM, Tabellini L, Baik C, Lawler RL, Grogan BM, Storer B, Chin A, Johnson M, Wong CH, Zhang Q, Martin PJ, McDonald GB. A novel soluble form of Tim-3 associated with severe graft-versus-host disease. Biol Blood Marrow Transplant. 2013 Sep; 19(9):1323-30. PMID: 23791624; PMCID: PMC3966623.
      Citations: 36     Fields:    Translation:Humans
    182. Baird BN, Schliekelman MJ, Ahn YH, Chen Y, Roybal JD, Gill BJ, Mishra DK, Erez B, O'Reilly M, Yang Y, Patel M, Liu X, Thilaganathan N, Larina IV, Dickinson ME, West JL, Gibbons DL, Liu DD, Kim MP, Hicks JM, Wistuba II, Hanash SM, Kurie JM. Fibulin-2 is a driver of malignant progression in lung adenocarcinoma. PLoS One. 2013; 8(6):e67054. PMID: 23785517; PMCID: PMC3677922.
      Citations: 28     Fields:    Translation:HumansAnimalsCells
    183. Chao T, Ladd JJ, Qiu J, Johnson MM, Israel R, Chin A, Wang H, Prentice RL, Feng Z, Disis ML, Hanash S. Proteomic profiling of the autoimmune response to breast cancer antigens uncovers a suppressive effect of hormone therapy. Proteomics Clin Appl. 2013 Jun; 7(5-6):327-36. PMID: 23401414; PMCID: PMC4681300.
      Citations: 2     Fields:    Translation:HumansCells
    184. Wu SL, Taylor AD, Lu Q, Hanash SM, Im H, Snyder M, Hancock WS. Identification of potential glycan cancer markers with sialic acid attached to sialic acid and up-regulated fucosylated galactose structures in epidermal growth factor receptor secreted from A431 cell line. Mol Cell Proteomics. 2013 May; 12(5):1239-49. PMID: 23371026; PMCID: PMC3650335.
      Citations: 9     Fields:    Translation:HumansCells
    185. Ladd JJ, Chao T, Johnson MM, Qiu J, Chin A, Israel R, Pitteri SJ, Mao J, Wu M, Amon LM, McIntosh M, Li C, Prentice R, Disis N, Hanash S. Autoantibody signatures involving glycolysis and splicesome proteins precede a diagnosis of breast cancer among postmenopausal women. Cancer Res. 2013 Mar 01; 73(5):1502-13. PMID: 23269276; PMCID: PMC4085738.
      Citations: 32     Fields:    Translation:HumansAnimalsCells
    186. Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, Lundberg E, Mias G, Menon R, Mu Z, Nice E, Paik YK, Uhlen M, Wells L, Wu SL, Yan F, Zhang F, Zhang Y, Snyder M, Omenn GS, Beavis RC, Hancock WS. A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17. J Proteome Res. 2013 Jan 04; 12(1):45-57. PMID: 23259914; PMCID: PMC4142220.
      Citations: 18     Fields:    Translation:HumansCells
    187. LeBeau AM, Lee M, Murphy ST, Hann BC, Warren RS, Delos Santos R, Kurhanewicz J, Hanash SM, VanBrocklin HF, Craik CS. Imaging a functional tumorigenic biomarker in the transformed epithelium. Proc Natl Acad Sci U S A. 2013 Jan 02; 110(1):93-8. PMID: 23248318; PMCID: PMC3538269.
      Citations: 20     Fields:    Translation:HumansCells
    188. Taguchi A, Hanash SM. Unleashing the power of proteomics to develop blood-based cancer markers. Clin Chem. 2013 Jan; 59(1):119-26. PMID: 23099557; PMCID: PMC5939937.
      Citations: 9     Fields:    Translation:Humans
    189. Hanash S. A call for a fresh new look at the plasma proteome. Proteomics Clin Appl. 2012 Oct; 6(9-10):443-6. PMID: 22930569.
      Citations: 7     Fields:    Translation:Humans
    190. dos Santos GA, Ferreira GA, Scheucher PS, Izumi C, Leopoldino AM, Ciancaglini P, de Oliveira KT, Chin A, Hanash SM, Rego EM, Greene LJ, Thom? CH, Sim?o AM, Falc?o RP, Fa?a VM. Linker for activation of T-cell family member2 (LAT2) a lipid raft adaptor protein for AKT signaling, is an early mediator of alkylphospholipid anti-leukemic activity. Mol Cell Proteomics. 2012 Dec; 11(12):1898-912. PMID: 23001822; PMCID: PMC3518132.
      Citations: 7     Fields:    Translation:HumansCells
    191. Li CI, Mirus JE, Zhang Y, Ramirez AB, Ladd JJ, Prentice RL, McIntosh MW, Hanash SM, Lampe PD. Discovery and preliminary confirmation of novel early detection biomarkers for triple-negative breast cancer using preclinical plasma samples from the Women's Health Initiative observational study. Breast Cancer Res Treat. 2012 Sep; 135(2):611-8. PMID: 22903690; PMCID: PMC3439142.
      Citations: 9     Fields:    Translation:Humans
    192. Lu H, Ladd J, Feng Z, Wu M, Goodell V, Pitteri SJ, Li CI, Prentice R, Hanash SM, Disis ML. Evaluation of known oncoantibodies, HER2, p53, and cyclin B1, in prediagnostic breast cancer sera. Cancer Prev Res (Phila). 2012 Aug; 5(8):1036-43. PMID: 22715141; PMCID: PMC3790582.
      Citations: 33     Fields:    Translation:Humans
    193. Press JZ, Reyes M, Pitteri SJ, Pennil C, Garcia R, Goff BA, Hanash SM, Swisher EM. Microparticles from ovarian carcinomas are shed into ascites and promote cell migration. Int J Gynecol Cancer. 2012 May; 22(4):546-52. PMID: 22315094.
      Citations: 18     Fields:    Translation:HumansCells
    194. Paik YK, Omenn GS, Uhlen M, Hanash S, Aebersold R, Bairoch A, Yamamoto T, Legrain P, Lee HJ, Na K, Jeong SK, He F, Binz PA, Nishimura T, Keown P, Baker MS, Yoo JS, Garin J, Archakov A, Bergeron J, Salekdeh GH, Hancock WS, Marko-Varga G. Standard guidelines for the chromosome-centric human proteome project. J Proteome Res. 2012 Apr 06; 11(4):2005-13. PMID: 22443261.
      Citations: 25     Fields:    Translation:HumansCells
    195. Kani K, Faca VM, Hughes LD, Zhang W, Fang Q, Shahbaba B, Luethy R, Erde J, Schmidt J, Pitteri SJ, Zhang Q, Katz JE, Gross ME, Plevritis SK, McIntosh MW, Jain A, Hanash S, Agus DB, Mallick P. Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition. Mol Cancer Ther. 2012 May; 11(5):1071-81. PMID: 22411897; PMCID: PMC3959865.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    196. Hanash S, Schliekelman M, Zhang Q, Taguchi A. Integration of proteomics into systems biology of cancer. Wiley Interdiscip Rev Syst Biol Med. 2012 Jul-Aug; 4(4):327-37. PMID: 22407608; PMCID: PMC4316827.
      Citations: 3     Fields:    Translation:HumansCells
    197. Paik YK, Jeong SK, Omenn GS, Uhlen M, Hanash S, Cho SY, Lee HJ, Na K, Choi EY, Yan F, Zhang F, Zhang Y, Snyder M, Cheng Y, Chen R, Deutsch EW, Kim H, Kwon JY, Aebersold R, Bairoch A, Taylor AD, Kim KY, Lee EY, Hochstrasser D, Legrain P, Hancock WS, Marko-Varga G. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome. Nat Biotechnol. 2012 Mar 07; 30(3):221-3. PMID: 22398612.
      Citations: 73     Fields:    Translation:HumansCells
    198. Amon LM, Pitteri SJ, Li CI, McIntosh M, Ladd JJ, Disis M, Porter P, Wong CH, Zhang Q, Lampe P, Prentice RL, Hanash SM. Concordant release of glycolysis proteins into the plasma preceding a diagnosis of ER+ breast cancer. Cancer Res. 2012 Apr 15; 72(8):1935-42. PMID: 22367215; PMCID: PMC4066614.
      Citations: 10     Fields:    Translation:HumansCells
    199. Ladd JJ, Busald T, Johnson MM, Zhang Q, Pitteri SJ, Wang H, Brenner DE, Lampe PD, Kucherlapati R, Feng Z, Prentice RL, Hanash SM. Increased plasma levels of the APC-interacting protein MAPRE1, LRG1, and IGFBP2 preceding a diagnosis of colorectal cancer in women. Cancer Prev Res (Phila). 2012 Apr; 5(4):655-64. PMID: 22277732; PMCID: PMC3419141.
      Citations: 45     Fields:    Translation:HumansCells
    200. Hanash S, Taguchi A. Application of proteomics to cancer early detection. Cancer J. 2011 Nov-Dec; 17(6):423-8. PMID: 22157286; PMCID: PMC4318261.
      Citations: 11     Fields:    Translation:HumansAnimals
    201. Zhang Q, Taguchi A, Schliekelman M, Wong CH, Chin A, Kuick R, Misek DE, Hanash S. Comprehensive proteomic profiling of aldehyde dehydrogenases in lung adenocarcinoma cell lines. Int J Proteomics. 2011; 2011:145010. PMID: 22110949; PMCID: PMC3205746.
      Citations: 8     
    202. Hanash SM. Why have protein biomarkers not reached the clinic? Genome Med. 2011 Oct 26; 3(10):66. PMID: 22030259; PMCID: PMC3239228.
      Citations: 8     Fields:    
    203. Schliekelman MJ, Gibbons DL, Faca VM, Creighton CJ, Rizvi ZH, Zhang Q, Wong CH, Wang H, Ungewiss C, Ahn YH, Shin DH, Kurie JM, Hanash SM. Targets of the tumor suppressor miR-200 in regulation of the epithelial-mesenchymal transition in cancer. Cancer Res. 2011 Dec 15; 71(24):7670-82. PMID: 21987723; PMCID: PMC3419137.
      Citations: 71     Fields:    Translation:HumansAnimalsCells
    204. Ferrara JL, Harris AC, Greenson JK, Braun TM, Holler E, Teshima T, Levine JE, Choi SW, Huber E, Landfried K, Akashi K, Vander Lugt M, Reddy P, Chin A, Zhang Q, Hanash S, Paczesny S. Regenerating islet-derived 3-alpha is a biomarker of gastrointestinal graft-versus-host disease. Blood. 2011 Dec 15; 118(25):6702-8. PMID: 21979939; PMCID: PMC3242723.
      Citations: 149     Fields:    Translation:HumansCells
    205. Taguchi A, Politi K, Pitteri SJ, Lockwood WW, Kelly-Spratt K, Wong CH, Zhang Q, Chin A, Park KS, Goodman G, Gazdar AF, Sage J, Dinulescu DM, Kucherlapati R, Depinho RA, Kemp CJ, Varmus HE, Hanash SM, Fa?a VM. Lung cancer signatures in plasma based on proteome profiling of mouse tumor models. Cancer Cell. 2011 Sep 13; 20(3):289-99. PMID: 21907921; PMCID: PMC3406925.
      Citations: 84     Fields:    Translation:HumansAnimalsCells
    206. Fang Q, Kani K, Faca VM, Zhang W, Zhang Q, Jain A, Hanash S, Agus DB, McIntosh MW, Mallick P. Impact of protein stability, cellular localization, and abundance on proteomic detection of tumor-derived proteins in plasma. PLoS One. 2011; 6(7):e23090. PMID: 21829587; PMCID: PMC3146523.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    207. Pitteri SJ, Kelly-Spratt KS, Gurley KE, Kennedy J, Buson TB, Chin A, Wang H, Zhang Q, Wong CH, Chodosh LA, Nelson PS, Hanash SM, Kemp CJ. Tumor microenvironment-derived proteins dominate the plasma proteome response during breast cancer induction and progression. Cancer Res. 2011 Aug 01; 71(15):5090-100. PMID: 21653680; PMCID: PMC3148311.
      Citations: 43     Fields:    Translation:HumansAnimalsCells
    208. Zeng Z, Hincapie M, Pitteri SJ, Hanash S, Schalkwijk J, Hogan JM, Wang H, Hancock WS. A proteomics platform combining depletion, multi-lectin affinity chromatography (M-LAC), and isoelectric focusing to study the breast cancer proteome. Anal Chem. 2011 Jun 15; 83(12):4845-54. PMID: 21513341; PMCID: PMC3148019.
      Citations: 42     Fields:    Translation:Humans
    209. Kelly-Spratt KS, Pitteri SJ, Gurley KE, Liggitt D, Chin A, Kennedy J, Wong CH, Zhang Q, Buson TB, Wang H, Hanash SM, Kemp CJ. Plasma proteome profiles associated with inflammation, angiogenesis, and cancer. PLoS One. 2011 May 12; 6(5):e19721. PMID: 21589862; PMCID: PMC3093388.
      Citations: 17     Fields:    Translation:Animals
    210. Hanash S. Harnessing the immune response for cancer detection. Cancer Epidemiol Biomarkers Prev. 2011 Apr; 20(4):569-70. PMID: 21454417.
      Citations: 4     Fields:    Translation:Humans
    211. Hanash SM, Baik CS, Kallioniemi O. Emerging molecular biomarkers--blood-based strategies to detect and monitor cancer. Nat Rev Clin Oncol. 2011 Mar; 8(3):142-50. PMID: 21364687.
      Citations: 102     Fields:    Translation:Humans
    212. Hanash S. Progress in mining the human proteome for disease applications. OMICS. 2011 Mar; 15(3):133-9. PMID: 21375461; PMCID: PMC3118795.
      Citations: 5     Fields:    Translation:Humans
    213. Wang H, Wong CH, Chin A, Taguchi A, Taylor A, Hanash S, Sekiya S, Takahashi H, Murase M, Kajihara S, Iwamoto S, Tanaka K. Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications. Nat Protoc. 2011 Mar; 6(3):253-69. PMID: 21372808; PMCID: PMC4677799.
      Citations: 9     Fields:    Translation:HumansCells
    214. Wang H, Hanash S. Intact-protein analysis system for discovery of serum-based disease biomarkers. Methods Mol Biol. 2011; 728:69-85. PMID: 21468941; PMCID: PMC4677997.
      Citations: 5     Fields:    Translation:Humans
    215. Zhang Q, Faca V, Hanash S. Mining the plasma proteome for disease applications across seven logs of protein abundance. J Proteome Res. 2011 Jan 07; 10(1):46-50. PMID: 21062094.
      Citations: 20     Fields:    Translation:Humans
    216. Pitteri SJ, Hanash SM. Confounding effects of hormone replacement therapy in protein biomarker studies. Cancer Epidemiol Biomarkers Prev. 2011 Jan; 20(1):134-9. PMID: 21037107; PMCID: PMC4317711.
      Citations: 5     Fields:    Translation:Humans
    217. Pitteri SJ, Amon LM, Busald Buson T, Zhang Y, Johnson MM, Chin A, Kennedy J, Wong CH, Zhang Q, Wang H, Lampe PD, Prentice RL, McIntosh MW, Hanash SM, Li CI. Detection of elevated plasma levels of epidermal growth factor receptor before breast cancer diagnosis among hormone therapy users. Cancer Res. 2010 Nov 01; 70(21):8598-606. PMID: 20959476; PMCID: PMC2970770.
      Citations: 19     Fields:    Translation:HumansCells
    218. Hanash S, Taguchi A. The grand challenge to decipher the cancer proteome. Nat Rev Cancer. 2010 09; 10(9):652-60. PMID: 20733593.
      Citations: 55     Fields:    Translation:HumansAnimals
    219. Prentice RL, Paczesny S, Aragaki A, Amon LM, Chen L, Pitteri SJ, McIntosh M, Wang P, Buson Busald T, Hsia J, Jackson RD, Rossouw JE, Manson JE, Johnson K, Eaton C, Hanash SM. Novel proteins associated with risk for coronary heart disease or stroke among postmenopausal women identified by in-depth plasma proteome profiling. Genome Med. 2010 Jul 28; 2(7):48. PMID: 20667078; PMCID: PMC2923740.
      Citations: 28     Fields:    
    220. Paczesny S, Braun TM, Levine JE, Hogan J, Crawford J, Coffing B, Olsen S, Choi SW, Wang H, Faca V, Pitteri S, Zhang Q, Chin A, Kitko C, Mineishi S, Yanik G, Peres E, Hanauer D, Wang Y, Reddy P, Hanash S, Ferrara JL. Elafin is a biomarker of graft-versus-host disease of the skin. Sci Transl Med. 2010 Jan 06; 2(13):13ra2. PMID: 20371463; PMCID: PMC2895410.
      Citations: 101     Fields:    Translation:Humans
    221. Pitteri S, Hanash S. A systems approach to the proteomic identification of novel cancer biomarkers. Dis Markers. 2010; 28(4):233-9. PMID: 20534908; PMCID: PMC3833612.
      Citations: 7     Fields:    Translation:Humans
    222. Pitteri SJ, Hanash SM, Aragaki A, Amon LM, Chen L, Busald Buson T, Paczesny S, Katayama H, Wang H, Johnson MM, Zhang Q, McIntosh M, Wang P, Kooperberg C, Rossouw JE, Jackson RD, Manson JE, Hsia J, Liu S, Martin L, Prentice RL. Postmenopausal estrogen and progestin effects on the serum proteome. Genome Med. 2009 Dec 24; 1(12):121. PMID: 20034393; PMCID: PMC2808737.
      Citations: 22     Fields:    
    223. Wang H, Wong CH, Chin A, Kennedy J, Zhang Q, Hanash S. Quantitative serum proteomics using dual stable isotope coding and nano LC-MS/MSMS. J Proteome Res. 2009 Dec; 8(12):5412-22. PMID: 19817497; PMCID: PMC4684172.
      Citations: 4     Fields:    Translation:Humans
    224. Pitteri SJ, JeBailey L, Thorpe JD, Silva MA, Horton MB, Wang H, Pruitt LC, Zhang Q, Cheng KH, Urban N, Hanash SM, Dinulescu DM, Fa?a VM, Ireton RC. Integrated proteomic analysis of human cancer cells and plasma from tumor bearing mice for ovarian cancer biomarker discovery. PLoS One. 2009 Nov 19; 4(11):e7916. PMID: 19936259; PMCID: PMC2775948.
      Citations: 25     Fields:    Translation:HumansAnimalsCells
    225. Zeng Z, Hincapie M, Haab BB, Hanash S, Pitteri SJ, Kluck S, Hogan JM, Kennedy J, Hancock WS. The development of an integrated platform to identify breast cancer glycoproteome changes in human serum. J Chromatogr A. 2010 May 07; 1217(19):3307-15. PMID: 19782370; PMCID: PMC4142217.
      Citations: 21     Fields:    Translation:Humans
    226. Garcia J, Faca V, Jarzembowski J, Zhang Q, Park J, Hanash S. Comprehensive profiling of the cell surface proteome of Sy5Y neuroblastoma cells yields a subset of proteins associated with tumor differentiation. J Proteome Res. 2009 Aug; 8(8):3791-6. PMID: 19505085.
      Citations: 8     Fields:    Translation:HumansCells
    227. Jeong SK, Kwon MS, Lee EY, Lee HJ, Cho SY, Kim H, Yoo JS, Omenn GS, Aebersold R, Hanash S, Paik YK. BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers. Proteomics. 2009 Jul; 9(14):3729-40. PMID: 19639590.
      Citations: 4     Fields:    Translation:Humans
    228. Taylor AD, Hancock WS, Hincapie M, Taniguchi N, Hanash SM. Towards an integrated proteomic and glycomic approach to finding cancer biomarkers. Genome Med. 2009 Jun 04; 1(6):57. PMID: 19519948; PMCID: PMC2703866.
      Citations: 19     Fields:    
    229. Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ, HUPO Test Sample Working Group. A HUPO test sample study reveals common problems in mass spectrometry-based proteomics. Nat Methods. 2009 Jun; 6(6):423-30. PMID: 19448641; PMCID: PMC2785450.
      Citations: 122     Fields:    Translation:Humans
    230. Diamandis EP, Hanash S, Lopez M, Carr S, Petricoin EF. Protein quantification by mass spectrometry: is it ready for prime time? Clin Chem. 2009 Jul; 55(7):1427-30. PMID: 19443560.
      Citations: 3     Fields:    
    231. Katayama H, Paczesny S, Prentice R, Aragaki A, Faca VM, Pitteri SJ, Zhang Q, Wang H, Silva M, Kennedy J, Rossouw J, Jackson R, Hsia J, Chlebowski R, Manson J, Hanash S. Application of serum proteomics to the Women's Health Initiative conjugated equine estrogens trial reveals a multitude of effects relevant to clinical findings. Genome Med. 2009 Apr 29; 1(4):47. PMID: 19402886; PMCID: PMC2684668.
      Citations: 29     Fields:    
    232. Harsha HC, Kandasamy K, Ranganathan P, Rani S, Ramabadran S, Gollapudi S, Balakrishnan L, Dwivedi SB, Telikicherla D, Selvan LD, Goel R, Mathivanan S, Marimuthu A, Kashyap M, Vizza RF, Mayer RJ, Decaprio JA, Srivastava S, Hanash SM, Hruban RH, Pandey A. A compendium of potential biomarkers of pancreatic cancer. PLoS Med. 2009 Apr 07; 6(4):e1000046. PMID: 19360088; PMCID: PMC2661257.
      Citations: 142     Fields:    Translation:HumansCells
    233. Vilar E, Mukherjee B, Kuick R, Raskin L, Misek DE, Taylor JM, Giordano TJ, Hanash SM, Fearon ER, Rennert G, Gruber SB. Gene expression patterns in mismatch repair-deficient colorectal cancers highlight the potential therapeutic role of inhibitors of the phosphatidylinositol 3-kinase-AKT-mammalian target of rapamycin pathway. Clin Cancer Res. 2009 Apr 15; 15(8):2829-39. PMID: 19351759; PMCID: PMC3425357.
      Citations: 31     Fields:    Translation:HumansCells
    234. Qiu J, Hanash S. Autoantibody profiling for cancer detection. Clin Lab Med. 2009 Mar; 29(1):31-46. PMID: 19389549.
      Citations: 13     Fields:    Translation:HumansCells
    235. Hung KE, Faca V, Song K, Sarracino DA, Richard LG, Krastins B, Forrester S, Porter A, Kunin A, Mahmood U, Haab BB, Hanash SM, Kucherlapati R. Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis. Cancer Prev Res (Phila). 2009 Mar; 2(3):224-33. PMID: 19240248; PMCID: PMC2874864.
      Citations: 26     Fields:    Translation:AnimalsCells
    236. Hanash SM, Fa?a VM. In-depth proteomics to define the cell surface and secretome of ovarian cancer cells and processes of protein shedding. Cancer Res. 2009 Feb 01; 69(3):728-30. PMID: 19155298; PMCID: PMC4720963.
      Citations: 24     Fields:    Translation:HumansCells
    237. Faca V, Wang H, Hanash S. Proteomic global profiling for cancer biomarker discovery. Methods Mol Biol. 2009; 492:309-20. PMID: 19241042.
      Citations: 4     Fields:    Translation:Humans
    238. Menon R, Zhang Q, Zhang Y, Fermin D, Bardeesy N, DePinho RA, Lu C, Hanash SM, Omenn GS, States DJ. Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer. Cancer Res. 2009 Jan 01; 69(1):300-9. PMID: 19118015; PMCID: PMC2613545.
      Citations: 35     Fields:    Translation:HumansAnimalsCells
    239. Souchelnytskyi S, Hanash S. Focus on breast cancer proteomics. Proteomics Clin Appl. 2009 Jan; 3(1):5. PMID: 21136931.
      Citations:    Fields:    
    240. Wang H, Hanash S. Electrospray mass spectrometry for quantitative plasma proteome analysis. Methods Mol Biol. 2009; 564:227-42. PMID: 19544026; PMCID: PMC4678002.
      Citations: 3     Fields:    Translation:Humans
    241. May D, Liu Y, Law W, Fitzgibbon M, Wang H, Hanash S, McIntosh M. Peptide sequence confidence in accurate mass and time analysis and its use in complex proteomics experiments. J Proteome Res. 2008 Dec; 7(12):5148-56. PMID: 19367719; PMCID: PMC5831358.
      Citations: 10     Fields:    
    242. Faca VM, Taylor AD, Hanash S, Jiang S, Vaisocherov? H. Comparative study of SPR and ELISA methods based on analysis of CD166/ALCAM levels in cancer and control human sera. Biosens Bioelectron. 2009 Mar 15; 24(7):2143-8. PMID: 19157844.
      Citations: 16     Fields:    Translation:Humans
    243. Fang Q, Strand A, Law W, Faca VM, Fitzgibbon MP, Hamel N, Houle B, Liu X, May DH, Poschmann G, Roy L, Ying W, Zhang J, Zheng Z, Bergeron JJ, Hanash S, He F, Leavitt BR, Meyer HE, Qian X, McIntosh MW, St?hler K. Brain-specific proteins decline in the cerebrospinal fluid of humans with Huntington disease. Mol Cell Proteomics. 2009 Mar; 8(3):451-66. PMID: 18984577; PMCID: PMC2649809.
      Citations: 30     Fields:    Translation:HumansAnimals
    244. McIntosh M, Anderson G, Drescher C, Hanash S, Urban N, Brown P, Gambhir SS, Coukos G, Laird PW, Nelson B, Palmer C. Ovarian cancer early detection claims are biased. Clin Cancer Res. 2008 Nov 15; 14(22):7574; author reply 7577-9. PMID: 18948385.
      Citations: 21     Fields:    Translation:HumansPHPublic Health
    245. Liu Y, Kuick R, Hanash S, Richardson B. DNA methylation inhibition increases T cell KIR expression through effects on both promoter methylation and transcription factors. Clin Immunol. 2009 Feb; 130(2):213-24. PMID: 18945643; PMCID: PMC2655730.
      Citations: 40     Fields:    Translation:HumansCells
    246. Paczesny S, Krijanovski OI, Braun TM, Choi SW, Clouthier SG, Kuick R, Misek DE, Cooke KR, Kitko CL, Weyand A, Bickley D, Jones D, Whitfield J, Reddy P, Levine JE, Hanash SM, Ferrara JL. A biomarker panel for acute graft-versus-host disease. Blood. 2009 Jan 08; 113(2):273-8. PMID: 18832652; PMCID: PMC2615645.
      Citations: 163     Fields:    Translation:Humans
    247. Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH. A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. RNA. 2008 Nov; 14(11):2290-6. PMID: 18812437; PMCID: PMC2578856.
      Citations: 85     Fields:    
    248. Qiu J, Choi G, Li L, Wang H, Pitteri SJ, Pereira-Faca SR, Krasnoselsky AL, Randolph TW, Omenn GS, Edelstein C, Barnett MJ, Thornquist MD, Goodman GE, Brenner DE, Feng Z, Hanash SM. Occurrence of autoantibodies to annexin I, 14-3-3 theta and LAMR1 in prediagnostic lung cancer sera. J Clin Oncol. 2008 Nov 01; 26(31):5060-6. PMID: 18794547; PMCID: PMC2652098.
      Citations: 77     Fields:    Translation:HumansCells
    249. Luethy R, Kessner DE, Katz JE, Maclean B, Grothe R, Kani K, Pitteri S, Hanash S, Agus DB, Mallick P, Fa?a V. Precursor-ion mass re-estimation improves peptide identification on hybrid instruments. J Proteome Res. 2008 Sep; 7(9):4031-9. PMID: 18707148; PMCID: PMC4673049.
      Citations: 18     Fields:    Translation:Humans
    250. Kim YS, Son OL, Lee JY, Kim SH, Oh S, Lee YS, Kim CH, Yoo JS, Lee JH, Miyoshi E, Taniguchi N, Hanash SM, Yoo HS, Ko JH. Lectin precipitation using phytohemagglutinin-L(4) coupled to avidin-agarose for serological biomarker discovery in colorectal cancer. Proteomics. 2008 Aug; 8(16):3229-35. PMID: 18633972.
      Citations: 8     Fields:    Translation:HumansCells
    251. Director's Challenge Consortium for the Molecular Classification of Lung Adenocarcinoma, Shedden K, Taylor JM, Enkemann SA, Tsao MS, Yeatman TJ, Gerald WL, Eschrich S, Jurisica I, Giordano TJ, Misek DE, Chang AC, Zhu CQ, Strumpf D, Hanash S, Shepherd FA, Ding K, Seymour L, Naoki K, Pennell N, Weir B, Verhaak R, Ladd-Acosta C, Golub T, Gruidl M, Sharma A, Szoke J, Zakowski M, Rusch V, Kris M, Viale A, Motoi N, Travis W, Conley B, Seshan VE, Meyerson M, Kuick R, Dobbin KK, Lively T, Jacobson JW, Beer DG. Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study. Nat Med. 2008 Aug; 14(8):822-7. PMID: 18641660; PMCID: PMC2667337.
      Citations: 552     Fields:    Translation:Humans
    252. Ventura AP, Fitzgibbon MP, Pitteri SJ, Green AE, Ireton RC, Zhang Q, Wang H, O'Briant KC, Drescher CW, McIntosh MW, Knudsen BS, Hanash SM, Fa?a VM, Pereira-Fa?a SR, Schummer M. Proteomic analysis of ovarian cancer cells reveals dynamic processes of protein secretion and shedding of extra-cellular domains. PLoS One. 2008 Jun 18; 3(6):e2425. PMID: 18560578; PMCID: PMC2409963.
      Citations: 66     Fields:    Translation:HumansCells
    253. Faca VM, Song KS, Wang H, Zhang Q, Krasnoselsky AL, Newcomb LF, Plentz RR, Gurumurthy S, Redston MS, Pitteri SJ, Pereira-Faca SR, Ireton RC, Katayama H, Glukhova V, Phanstiel D, Brenner DE, Anderson MA, Misek D, Scholler N, Urban ND, Barnett MJ, Edelstein C, Goodman GE, Thornquist MD, McIntosh MW, DePinho RA, Bardeesy N, Hanash SM. A mouse to human search for plasma proteome changes associated with pancreatic tumor development. PLoS Med. 2008 Jun 10; 5(6):e123. PMID: 18547137; PMCID: PMC2504036.
      Citations: 108     Fields:    Translation:HumansAnimals
    254. Zhang Q, Menon R, Deutsch EW, Pitteri SJ, Faca VM, Wang H, Newcomb LF, Depinho RA, Bardeesy N, Dinulescu D, Hung KE, Kucherlapati R, Jacks T, Politi K, Aebersold R, Omenn GS, States DJ, Hanash SM. A mouse plasma peptide atlas as a resource for disease proteomics. Genome Biol. 2008; 9(6):R93. PMID: 18522751; PMCID: PMC2481425.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    255. Wang H, Hanash SM. Increased throughput and reduced carryover of mass spectrometry-based proteomics using a high-efficiency nonsplit nanoflow parallel dual-column capillary HPLC system. J Proteome Res. 2008 Jul; 7(7):2743-55. PMID: 18512973.
      Citations: 5     Fields:    Translation:Humans
    256. Ehrlich M, Sanchez C, Shao C, Nishiyama R, Kehrl J, Kuick R, Kubota T, Hanash SM. ICF, an immunodeficiency syndrome: DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation. Autoimmunity. 2008 May; 41(4):253-71. PMID: 18432406; PMCID: PMC2430169.
      Citations: 49     Fields:    Translation:HumansAnimalsCells
    257. Krasnoselsky AL, Faca VM, Pitteri SJ, Zhang Q, Hanash SM. Isoform analysis of LC-MS/MS data from multidimensional fractionation of the serum proteome. J Proteome Res. 2008 Jun; 7(6):2546-52. PMID: 18419151.
      Citations: 2     Fields:    Translation:Humans
    258. Hanash SM, Pitteri SJ, Faca VM. Mining the plasma proteome for cancer biomarkers. Nature. 2008 Apr 03; 452(7187):571-9. PMID: 18385731.
      Citations: 283     Fields:    Translation:Humans
    259. Pitteri SJ, Faca VM, Kelly-Spratt KS, Kasarda AE, Wang H, Zhang Q, Newcomb L, Krasnoselsky A, Paczesny S, Choi G, Fitzgibbon M, McIntosh MW, Kemp CJ, Hanash SM. Plasma proteome profiling of a mouse model of breast cancer identifies a set of up-regulated proteins in common with human breast cancer cells. J Proteome Res. 2008 Apr; 7(4):1481-9. PMID: 18311905.
      Citations: 31     Fields:    Translation:HumansAnimalsCells
    260. Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vasilescu J, Veenstra TD, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A, Bj?rling E, Bustelo XR, Gagn? P, Hjern? K, Jensen PH, K?rner R, L?bke C, Vandekerckhove J, Vidal-Taboada JM. Human Proteinpedia enables sharing of human protein data. Nat Biotechnol. 2008 Feb; 26(2):164-7. PMID: 18259167.
      Citations: 74     Fields:    
    261. Pereira-Faca SR, Kuick R, Puravs E, Zhang Q, Krasnoselsky AL, Phanstiel D, Qiu J, Misek DE, Hinderer R, Tammemagi M, Landi MT, Caporaso N, Pfeiffer R, Edelstein C, Goodman G, Barnett M, Thornquist M, Brenner D, Hanash SM. Identification of 14-3-3 theta as an antigen that induces a humoral response in lung cancer. Cancer Res. 2007 Dec 15; 67(24):12000-6. PMID: 18089831.
      Citations: 24     Fields:    Translation:HumansCells
    262. Kuick R, Wang H, Misek DE, Hanash SM, Madoz-G?rpide J. Integral protein microarrays for the identification of lung cancer antigens in sera that induce a humoral immune response. Mol Cell Proteomics. 2008 Feb; 7(2):268-81. PMID: 17916591.
      Citations: 25     Fields:    Translation:HumansCells
    263. Pitteri SJ, Hanash SM. Proteomic approaches for cancer biomarker discovery in plasma. Expert Rev Proteomics. 2007 Oct; 4(5):589-90. PMID: 17941811.
      Citations: 5     Fields:    Translation:Humans
    264. Hanash S. It takes a village to develop biomarkers. J Proteome Res. 2007 Sep; 6(9):3362. PMID: 17924484.
      Citations:    Fields:    Translation:HumansCells
    265. Faca V, Hanash S. In-depth quantitative proteomics for pancreatic cancer biomarker discovery. Expert Opin Med Diagn. 2007 Sep; 1(1):81-9. PMID: 23489270.
      Citations:    Fields:    
    266. Faca V, Krasnoselsky A, Hanash S. Innovative proteomic approaches for cancer biomarker discovery. Biotechniques. 2007 Sep; 43(3):279, 281-3, 285. PMID: 17907570.
      Citations: 8     Fields:    Translation:HumansAnimals
    267. Faca V, Pitteri SJ, Newcomb L, Glukhova V, Phanstiel D, Krasnoselsky A, Zhang Q, Struthers J, Wang H, Eng J, Fitzgibbon M, McIntosh M, Hanash S. Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes. J Proteome Res. 2007 Sep; 6(9):3558-65. PMID: 17696519.
      Citations: 58     Fields:    Translation:Humans
    268. Forrester S, Qiu J, Mangold L, Partin A, Misek D, Phinney B, Whitten D, Andrews P, Diamandis E, Omenn GS, Hanash S, Haab BB. An experimental strategy for quantitative analysis of the humoral immune response to prostate cancer antigens using natural protein microarrays. Proteomics Clin Appl. 2007 May; 1(5):494-505. PMID: 21136701.
      Citations: 3     Fields:    
    269. Wu R, Hendrix-Lucas N, Kuick R, Zhai Y, Schwartz DR, Akyol A, Hanash S, Misek DE, Katabuchi H, Williams BO, Fearon ER, Cho KR. Mouse model of human ovarian endometrioid adenocarcinoma based on somatic defects in the Wnt/beta-catenin and PI3K/Pten signaling pathways. Cancer Cell. 2007 Apr; 11(4):321-33. PMID: 17418409.
      Citations: 153     Fields:    Translation:HumansAnimalsCells
    270. Kuick R, Misek DE, Monsma DJ, Webb CP, Wang H, Peterson KJ, Pisano M, Omenn GS, Hanash SM. Discovery of cancer biomarkers through the use of mouse models. Cancer Lett. 2007 Apr 28; 249(1):40-8. PMID: 17320282.
      Citations: 8     Fields:    Translation:HumansAnimals
    271. Seliger B, Fedorushchenko A, Brenner W, Ackermann A, Atkins D, Hanash S, Lichtenfels R. Ubiquitin COOH-terminal hydrolase 1: a biomarker of renal cell carcinoma associated with enhanced tumor cell proliferation and migration. Clin Cancer Res. 2007 Jan 01; 13(1):27-37. PMID: 17200335.
      Citations: 23     Fields:    Translation:HumansCells
    272. Song K, Hanash S. Unraveling the complex proteome for biomarker discovery in gastrointestinal and liver diseases. Gastroenterology. 2006 Nov; 131(5):1375-8. PMID: 17064703.
      Citations:    Fields:    Translation:Humans
    273. Fang R, Wang H, Deng B, McIntosh MW, Hanash SM, Beretta L, Mannov? P. Modification of host lipid raft proteome upon hepatitis C virus replication. Mol Cell Proteomics. 2006 Dec; 5(12):2319-25. PMID: 16943187.
      Citations: 39     Fields:    Translation:HumansCells
    274. Gupta A, Williams BR, Hanash SM, Rawwas J. Cellular retinoic acid-binding protein II is a direct transcriptional target of MycN in neuroblastoma. Cancer Res. 2006 Aug 15; 66(16):8100-8. PMID: 16912187.
      Citations: 14     Fields:    Translation:HumansCells
    275. Faca V, Coram M, Phanstiel D, Glukhova V, Zhang Q, Fitzgibbon M, McIntosh M, Hanash S. Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS. J Proteome Res. 2006 Aug; 5(8):2009-18. PMID: 16889424.
      Citations: 60     Fields:    Translation:HumansCells
    276. Djuric U, El-Maarri O, Lamb B, Kuick R, Seoud M, Coullin P, Oldenburg J, Hanash S, Slim R. Familial molar tissues due to mutations in the inflammatory gene, NALP7, have normal postzygotic DNA methylation. Hum Genet. 2006 Oct; 120(3):390-5. PMID: 16874523.
      Citations: 10     Fields:    Translation:HumansCells
    277. Kubisch CH, Gukovsky I, Lugea A, Pandol SJ, Kuick R, Misek DE, Hanash SM, Logsdon CD. Long-term ethanol consumption alters pancreatic gene expression in rats: a possible connection to pancreatic injury. Pancreas. 2006 Jul; 33(1):68-76. PMID: 16804415.
      Citations: 21     Fields:    Translation:Animals
    278. Chignard N, Shang S, Wang H, Marrero J, Hanash S, Beretta L, Br?chot C. Cleavage of endoplasmic reticulum proteins in hepatocellular carcinoma: Detection of generated fragments in patient sera. Gastroenterology. 2006 Jun; 130(7):2010-22. PMID: 16762624.
      Citations: 19     Fields:    Translation:HumansCells
    279. Giordano TJ, Au AY, Kuick R, Thomas DG, Rhodes DR, Wilhelm KG, Vinco M, Misek DE, Sanders D, Zhu Z, Ciampi R, Hanash S, Chinnaiyan A, Clifton-Bligh RJ, Robinson BG, Nikiforov YE, Koenig RJ. Delineation, functional validation, and bioinformatic evaluation of gene expression in thyroid follicular carcinomas with the PAX8-PPARG translocation. Clin Cancer Res. 2006 Apr 01; 12(7 Pt 1):1983-93. PMID: 16609007.
      Citations: 68     Fields:    Translation:HumansCells
    280. States DJ, Omenn GS, Blackwell TW, Fermin D, Eng J, Speicher DW, Hanash SM. Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. Nat Biotechnol. 2006 Mar; 24(3):333-8. PMID: 16525410.
      Citations: 97     Fields:    Translation:Humans
    281. Murdoch S, Djuric U, Mazhar B, Seoud M, Khan R, Kuick R, Bagga R, Kircheisen R, Ao A, Ratti B, Hanash S, Rouleau GA, Slim R. Mutations in NALP7 cause recurrent hydatidiform moles and reproductive wastage in humans. Nat Genet. 2006 Mar; 38(3):300-2. PMID: 16462743.
      Citations: 144     Fields:    Translation:Humans
    282. Davis MA, Hanash S. High-throughput genomic technology in research and clinical management of breast cancer. Plasma-based proteomics in early detection and therapy. Breast Cancer Res. 2006; 8(6):217. PMID: 17184556; PMCID: PMC1797031.
      Citations: 8     Fields:    Translation:Humans
    283. Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whiteaker J, Whitaker J, States D, Hanash S, Paulovich A, McIntosh MW. Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. J Proteome Res. 2006 Jan; 5(1):112-21. PMID: 16396501.
      Citations: 89     Fields:    
    284. Hong SH, Misek DE, Wang H, Puravs E, Hinderer R, Giordano TJ, Greenson JK, Brenner DE, Simeone DM, Logsdon CD, Hanash SM. Identification of a Specific Vimentin Isoform That Induces an Antibody Response in Pancreatic Cancer. Biomark Insights. 2006; 1:175-183. PMID: 18769604; PMCID: PMC2528299.
      Citations: 16     
    285. Giordano TJ, Kuick R, Thomas DG, Misek DE, Vinco M, Sanders D, Zhu Z, Ciampi R, Roh M, Shedden K, Gauger P, Doherty G, Thompson NW, Hanash S, Koenig RJ, Nikiforov YE. Molecular classification of papillary thyroid carcinoma: distinct BRAF, RAS, and RET/PTC mutation-specific gene expression profiles discovered by DNA microarray analysis. Oncogene. 2005 Oct 06; 24(44):6646-56. PMID: 16007166.
      Citations: 128     Fields:    Translation:HumansCells
    286. Gao WM, Kuick R, Orchekowski RP, Misek DE, Qiu J, Greenberg AK, Rom WN, Brenner DE, Omenn GS, Haab BB, Hanash SM. Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis. BMC Cancer. 2005 Aug 23; 5:110. PMID: 16117833; PMCID: PMC1198221.
      Citations: 39     Fields:    Translation:Humans
    287. Misek DE, Kuick R, Wang H, Galchev V, Deng B, Zhao R, Tra J, Pisano MR, Amunugama R, Allen D, Walker AK, Strahler JR, Andrews P, Omenn GS, Hanash SM. A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system. Proteomics. 2005 Aug; 5(13):3343-52. PMID: 16047307.
      Citations: 19     Fields:    Translation:Humans
    288. Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics. 2005 Aug; 5(13):3226-45. PMID: 16104056.
      Citations: 225     Fields:    Translation:Humans
    289. Ping P, Vondriska TM, Creighton CJ, Gandhi TK, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, Rekha B, Shet AS, Gerszten RE, Wu H, Raftery M, Wasinger V, Schulz-Knappe P, Hanash SM, Paik YK, Hancock WS, States DJ, Omenn GS, Pandey A. A functional annotation of subproteomes in human plasma. Proteomics. 2005 Aug; 5(13):3506-19. PMID: 16104058.
      Citations: 24     Fields:    Translation:HumansCells
    290. Rozek LS, Lipkin SM, Fearon ER, Hanash S, Giordano TJ, Greenson JK, Kuick R, Misek DE, Taylor JM, Douglas JA, Rennert G, Gruber SB. CDX2 polymorphisms, RNA expression, and risk of colorectal cancer. Cancer Res. 2005 Jul 01; 65(13):5488-92. PMID: 15994917.
      Citations: 12     Fields:    Translation:Humans
    291. Li JY, Kuick R, Thompson RC, Misek DE, Lai YM, Liu YQ, Chai BX, Hanash SM, Gantz I. Arcuate nucleus transcriptome profiling identifies ankyrin repeat and suppressor of cytokine signalling box-containing protein 4 as a gene regulated by fasting in central nervous system feeding circuits. J Neuroendocrinol. 2005 Jun; 17(6):394-404. PMID: 15929745.
      Citations: 13     Fields:    Translation:AnimalsCells
    292. Wang H, Hanash S. Intact-protein based sample preparation strategies for proteome analysis in combination with mass spectrometry. Mass Spectrom Rev. 2005 May-Jun; 24(3):413-26. PMID: 15389852.
      Citations: 24     Fields:    Translation:HumansAnimals
    293. Hinoi T, Gesina G, Akyol A, Kuick R, Hanash S, Giordano TJ, Gruber SB, Fearon ER. CDX2-regulated expression of iron transport protein hephaestin in intestinal and colonic epithelium. Gastroenterology. 2005 Apr; 128(4):946-61. PMID: 15825077.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    294. Williams TM, Williams ME, Kuick R, Misek D, McDonagh K, Hanash S, Innis JW. Candidate downstream regulated genes of HOX group 13 transcription factors with and without monomeric DNA binding capability. Dev Biol. 2005 Mar 15; 279(2):462-80. PMID: 15733672.
      Citations: 19     Fields:    Translation:AnimalsCells
    295. Shedden KA, Kshirsagar MP, Schwartz DR, Wu R, Yu H, Misek DE, Hanash S, Katabuchi H, Ellenson LH, Fearon ER, Cho KR. Histologic type, organ of origin, and Wnt pathway status: effect on gene expression in ovarian and uterine carcinomas. Clin Cancer Res. 2005 Mar 15; 11(6):2123-31. PMID: 15788657.
      Citations: 16     Fields:    Translation:HumansCells
    296. Creighton CJ, Bromberg-White JL, Misek DE, Monsma DJ, Brichory F, Kuick R, Giordano TJ, Gao W, Omenn GS, Webb CP, Hanash SM. Analysis of tumor-host interactions by gene expression profiling of lung adenocarcinoma xenografts identifies genes involved in tumor formation. Mol Cancer Res. 2005 Mar; 3(3):119-29. PMID: 15798092.
      Citations: 28     Fields:    Translation:HumansAnimalsCells
    297. Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. BMC Bioinformatics. 2005 Feb 10; 6:26. PMID: 15705192; PMCID: PMC550659.
      Citations: 44     Fields:    Translation:HumansCells
    298. Wang H, Clouthier SG, Galchev V, Misek DE, Duffner U, Min CK, Zhao R, Tra J, Omenn GS, Ferrara JL, Hanash SM. Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids. Mol Cell Proteomics. 2005 May; 4(5):618-25. PMID: 15703445.
      Citations: 37     Fields:    Translation:Humans
    299. Steel LF, Haab BB, Hanash SM. Methods of comparative proteomic profiling for disease diagnostics. J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Feb 05; 815(1-2):275-84. PMID: 15652816.
      Citations: 5     Fields:    
    300. Dobbin KK, Beer DG, Meyerson M, Yeatman TJ, Gerald WL, Jacobson JW, Conley B, Buetow KH, Heiskanen M, Simon RM, Minna JD, Girard L, Misek DE, Taylor JM, Hanash S, Naoki K, Hayes DN, Ladd-Acosta C, Enkemann SA, Viale A, Giordano TJ. Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays. Clin Cancer Res. 2005 Jan 15; 11(2 Pt 1):565-72. PMID: 15701842.
      Citations: 59     Fields:    Translation:HumansCells
    301. Misek DE, Kuick R, Hanash SM, Logsdon CD. Oligonucleotide-directed microarray gene profiling of pancreatic adenocarcinoma. Methods Mol Med. 2005; 103:175-87. PMID: 15542906.
      Citations: 1     Fields:    Translation:HumansCells
    302. Nam MJ, Kee MK, Kuick R, Hanash SM. Identification of defensin alpha6 as a potential biomarker in colon adenocarcinoma. J Biol Chem. 2005 Mar 04; 280(9):8260-5. PMID: 15613481.
      Citations: 15     Fields:    Translation:HumansCells
    303. Marcus B, Arenberg D, Lee J, Kleer C, Chepeha DB, Schmalbach CE, Islam M, Paul S, Pan Q, Hanash S, Kuick R, Merajver SD, Teknos TN. Prognostic factors in oral cavity and oropharyngeal squamous cell carcinoma. Cancer. 2004 Dec 15; 101(12):2779-87. PMID: 15546137.
      Citations: 53     Fields:    Translation:HumansCells
    304. Misek DE, Imafuku Y, Hanash SM. Application of proteomic technologies to tumor analysis. Pharmacogenomics. 2004 Dec; 5(8):1129-37. PMID: 15584879.
      Citations: 4     Fields:    Translation:HumansAnimals
    305. Binkley CE, Zhang L, Greenson JK, Giordano TJ, Kuick R, Misek D, Hanash S, Logsdon CD, Simeone DM. The molecular basis of pancreatic fibrosis: common stromal gene expression in chronic pancreatitis and pancreatic adenocarcinoma. Pancreas. 2004 Nov; 29(4):254-63. PMID: 15502640.
      Citations: 46     Fields:    Translation:HumansCells
    306. Nakamura K, Aebersold R, Bairoch A, Dunn M, Celis J, Hanash S, Hochstrasser D, Humphrey-Smith I, James P, Klose J, LaBaer J, Langen H, Mann M, Parekh R, Patterson S, Pearce C, Poepstorff P, Simpson RJ, Tomlinson I, Tsugita A, Yates J. [From genome to proteome--aim of human proteomics]. Seikagaku. 2004 Oct; 76(10):1271-4. PMID: 15580857.
      Citations: 2     Fields:    Translation:HumansAnimals
    307. Engstrom LD, Youkilis AS, Gorelick JL, Zheng D, Ackley V, Petroff CA, Benson LQ, Coon MR, Zhu X, Hanash SM, Wechsler DS. Mxi1-0, an alternatively transcribed Mxi1 isoform, is overexpressed in glioblastomas. Neoplasia. 2004 Sep-Oct; 6(5):660-73. PMID: 15548375; PMCID: PMC1531670.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    308. Girard S, Vossman E, Misek DE, Podevin P, Hanash S, Beretta L, Br?chot C. Hepatitis C virus NS5A-regulated gene expression and signaling revealed via microarray and comparative promoter analyses. Hepatology. 2004 Sep; 40(3):708-18. PMID: 15349911.
      Citations: 11     Fields:    Translation:HumansCells
    309. Barnes BJ, Richards J, Mancl M, Hanash S, Beretta L, Pitha PM. Global and distinct targets of IRF-5 and IRF-7 during innate response to viral infection. J Biol Chem. 2004 Oct 22; 279(43):45194-207. PMID: 15308637.
      Citations: 106     Fields:    Translation:HumansCells
    310. Hong SH, Misek DE, Wang H, Puravs E, Giordano TJ, Greenson JK, Brenner DE, Simeone DM, Logsdon CD, Hanash SM. An autoantibody-mediated immune response to calreticulin isoforms in pancreatic cancer. Cancer Res. 2004 Aug 01; 64(15):5504-10. PMID: 15289361.
      Citations: 43     Fields:    Translation:HumansCells
    311. Hanash S. Integrated global profiling of cancer. Nat Rev Cancer. 2004 08; 4(8):638-44. PMID: 15286743.
      Citations: 44     Fields:    Translation:HumansCells
    312. Oelke K, Lu Q, Richardson D, Wu A, Deng C, Hanash S, Richardson B. Overexpression of CD70 and overstimulation of IgG synthesis by lupus T cells and T cells treated with DNA methylation inhibitors. Arthritis Rheum. 2004 Jun; 50(6):1850-60. PMID: 15188362.
      Citations: 85     Fields:    Translation:HumansCells
    313. Ullmann R, Rouillard JM, Lamb BJ, Kuick R, Hanash SM, Schnittger S, Schoch C, Fonatsch C, Wimmer K, Zatkova A. Distinct sequences on 11q13.5 and 11q23-24 are frequently coamplified with MLL in complexly organized 11q amplicons in AML/MDS patients. Genes Chromosomes Cancer. 2004 Apr; 39(4):263-76. PMID: 14978788.
      Citations: 5     Fields:    Translation:HumansCells
    314. Asakawa J, Kuick R, Kodaira M, Nakamura N, Katayama H, Pierce D, Funamoto S, Preston D, Satoh C, Neel JV, Hanash S. A genome scanning approach to assess the genetic effects of radiation in mice and humans. Radiat Res. 2004 Apr; 161(4):380-90. PMID: 15038760.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    315. Chen G, Wang H, Miller CT, Thomas DG, Gharib TG, Misek DE, Giordano TJ, Orringer MB, Hanash SM, Beer DG. Reduced selenium-binding protein 1 expression is associated with poor outcome in lung adenocarcinomas. J Pathol. 2004 Mar; 202(3):321-9. PMID: 14991897.
      Citations: 55     Fields:    Translation:HumansCells
    316. Gharib TG, Chen G, Huang CC, Misek DE, Iannettoni MD, Hanash SM, Orringer MB, Beer DG. Genomic and proteomic analyses of vascular endothelial growth factor and insulin-like growth factor-binding protein 3 in lung adenocarcinomas. Clin Lung Cancer. 2004 Mar; 5(5):307-12. PMID: 15086970.
      Citations: 5     Fields:    Translation:Humans
    317. Qiu J, Madoz-Gurpide J, Misek DE, Kuick R, Brenner DE, Michailidis G, Haab BB, Omenn GS, Hanash S. Development of natural protein microarrays for diagnosing cancer based on an antibody response to tumor antigens. J Proteome Res. 2004 Mar-Apr; 3(2):261-7. PMID: 15113102.
      Citations: 33     Fields:    Translation:HumansCells
    318. Schmalbach CE, Chepeha DB, Giordano TJ, Rubin MA, Teknos TN, Bradford CR, Wolf GT, Kuick R, Misek DE, Trask DK, Hanash S. Molecular profiling and the identification of genes associated with metastatic oral cavity/pharynx squamous cell carcinoma. Arch Otolaryngol Head Neck Surg. 2004 Mar; 130(3):295-302. PMID: 15023835.
      Citations: 40     Fields:    Translation:Humans
    319. Hanash S. Building a foundation for the human proteome: the role of the Human Proteome Organization. J Proteome Res. 2004 Mar-Apr; 3(2):197-9. PMID: 15113094.
      Citations: 2     Fields:    Translation:Humans
    320. Chen G, Isidoro A, Misek DE, Hanash SM, Beer DG, Cuezva JM, Alonso AM. The bioenergetic signature of lung adenocarcinomas is a molecular marker of cancer diagnosis and prognosis. Carcinogenesis. 2004 Jul; 25(7):1157-63. PMID: 14963017.
      Citations: 50     Fields:    Translation:Humans
    321. Rouillard JM, Hartmann W, Lamb BJ, Kuick R, Eckart M, von Schweinitz D, Koch A, Fonatsch C, Pietsch T, Hanash SM, Wimmer K, Zatkova A. Amplification and overexpression of the IGF2 regulator PLAG1 in hepatoblastoma. Genes Chromosomes Cancer. 2004 Feb; 39(2):126-37. PMID: 14695992.
      Citations: 39     Fields:    Translation:HumansCells
    322. Hanash S. HUPO initiatives relevant to clinical proteomics. Mol Cell Proteomics. 2004 Apr; 3(4):298-301. PMID: 14747694.
      Citations: 8     Fields:    Translation:Humans
    323. Imafuku Y, Omenn GS, Hanash S. Proteomics approaches to identify tumor antigen directed autoantibodies as cancer biomarkers. Dis Markers. 2004; 20(3):149-53. PMID: 15502247; PMCID: PMC3839398.
      Citations: 15     Fields:    Translation:Humans
    324. Chen J, Mo R, Lescure PA, Misek DE, Hanash S, Rochford R, Hobbs M, Yung RL. Aging is associated with increased T-cell chemokine expression in C57BL/6 mice. J Gerontol A Biol Sci Med Sci. 2003 Nov; 58(11):975-83. PMID: 14630877.
      Citations: 19     Fields:    Translation:AnimalsCells
    325. Hanash S. The emerging field of protein microarrays. Proteomics. 2003 Nov; 3(11):2075. PMID: 14595827.
      Citations:    Fields:    Translation:Humans
    326. Shedden KA, Taylor JM, Giordano TJ, Kuick R, Misek DE, Rennert G, Schwartz DR, Gruber SB, Logsdon C, Simeone D, Kardia SL, Greenson JK, Cho KR, Beer DG, Fearon ER, Hanash S. Accurate molecular classification of human cancers based on gene expression using a simple classifier with a pathological tree-based framework. Am J Pathol. 2003 Nov; 163(5):1985-95. PMID: 14578198; PMCID: PMC1892445.
      Citations: 20     Fields:    Translation:Humans
    327. Nam MJ, Madoz-Gurpide J, Wang H, Lescure P, Schmalbach CE, Zhao R, Misek DE, Kuick R, Brenner DE, Hanash SM. Molecular profiling of the immune response in colon cancer using protein microarrays: occurrence of autoantibodies to ubiquitin C-terminal hydrolase L3. Proteomics. 2003 Nov; 3(11):2108-15. PMID: 14595809.
      Citations: 25     Fields:    Translation:HumansCells
    328. Bouwman K, Qiu J, Zhou H, Schotanus M, Mangold LA, Vogt R, Erlandson E, Trenkle J, Partin AW, Misek D, Omenn GS, Haab BB, Hanash S. Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity. Proteomics. 2003 Nov; 3(11):2200-7. PMID: 14595819.
      Citations: 25     Fields:    Translation:HumansCells
    329. Chen G, Gharib TG, Wang H, Huang CC, Kuick R, Thomas DG, Shedden KA, Misek DE, Taylor JM, Giordano TJ, Kardia SL, Iannettoni MD, Yee J, Hogg PJ, Orringer MB, Hanash SM, Beer DG. Protein profiles associated with survival in lung adenocarcinoma. Proc Natl Acad Sci U S A. 2003 Nov 11; 100(23):13537-42. PMID: 14573703; PMCID: PMC263849.
      Citations: 75     Fields:    Translation:HumansCells
    330. Jang JH, Hanash S. Profiling of the cell surface proteome. Proteomics. 2003 Oct; 3(10):1947-54. PMID: 14625857.
      Citations: 32     Fields:    Translation:HumansCells
    331. Grolleau A, Misek DE, Kuick R, Hanash S, Mul? JJ. Inducible expression of macrophage receptor Marco by dendritic cells following phagocytic uptake of dead cells uncovered by oligonucleotide arrays. J Immunol. 2003 Sep 15; 171(6):2879-88. PMID: 12960310.
      Citations: 16     Fields:    Translation:AnimalsCells
    332. Miller CT, Chen G, Gharib TG, Wang H, Thomas DG, Misek DE, Giordano TJ, Yee J, Orringer MB, Hanash SM, Beer DG. Increased C-CRK proto-oncogene expression is associated with an aggressive phenotype in lung adenocarcinomas. Oncogene. 2003 Sep 11; 22(39):7950-7. PMID: 12970743.
      Citations: 42     Fields:    Translation:HumansCells
    333. Wolter M, Kuick R, Misek DE, Youkilis AS, Wechsler DS, Sommer C, Reifenberger G, Hanash SM, van den Boom J. Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction. Am J Pathol. 2003 Sep; 163(3):1033-43. PMID: 12937144; PMCID: PMC1868272.
      Citations: 116     Fields:    Translation:Humans
    334. Ji B, Chen XQ, Misek DE, Kuick R, Hanash S, Ernst S, Najarian R, Logsdon CD. Pancreatic gene expression during the initiation of acute pancreatitis: identification of EGR-1 as a key regulator. Physiol Genomics. 2003 Jun 24; 14(1):59-72. PMID: 12709512.
      Citations: 34     Fields:    Translation:AnimalsCells
    335. Creighton C, Kuick R, Misek DE, Rickman DS, Brichory FM, Rouillard JM, Omenn GS, Hanash S. Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice. Genome Biol. 2003; 4(7):R46. PMID: 12844362; PMCID: PMC193633.
      Citations: 23     Fields:    Translation:HumansAnimalsCells
    336. Schwartz DR, Wu R, Kardia SL, Levin AM, Huang CC, Shedden KA, Kuick R, Misek DE, Hanash SM, Taylor JM, Reed H, Hendrix N, Zhai Y, Fearon ER, Cho KR. Novel candidate targets of beta-catenin/T-cell factor signaling identified by gene expression profiling of ovarian endometrioid adenocarcinomas. Cancer Res. 2003 Jun 01; 63(11):2913-22. PMID: 12782598.
      Citations: 52     Fields:    Translation:HumansCells
    337. Logsdon CD, Simeone DM, Binkley C, Arumugam T, Greenson JK, Giordano TJ, Misek DE, Kuick R, Hanash S. Molecular profiling of pancreatic adenocarcinoma and chronic pancreatitis identifies multiple genes differentially regulated in pancreatic cancer. Cancer Res. 2003 May 15; 63(10):2649-57. PMID: 12750293.
      Citations: 229     Fields:    Translation:HumansCells
    338. Lu Q, Wu A, Ray D, Deng C, Attwood J, Hanash S, Pipkin M, Lichtenheld M, Richardson B. DNA methylation and chromatin structure regulate T cell perforin gene expression. J Immunol. 2003 May 15; 170(10):5124-32. PMID: 12734359.
      Citations: 59     Fields:    Translation:HumansAnimalsCells
    339. Wu R, Lin L, Beer DG, Ellenson LH, Lamb BJ, Rouillard JM, Kuick R, Hanash S, Schwartz DR, Fearon ER, Cho KR. Amplification and overexpression of the L-MYC proto-oncogene in ovarian carcinomas. Am J Pathol. 2003 May; 162(5):1603-10. PMID: 12707044; PMCID: PMC1851191.
      Citations: 22     Fields:    Translation:HumansCells
    340. Creighton C, Hanash S, Beer D. Gene expression patterns define pathways correlated with loss of differentiation in lung adenocarcinomas. FEBS Lett. 2003 Apr 10; 540(1-3):167-70. PMID: 12681502.
      Citations: 9     Fields:    Translation:Humans
    341. Wang H, Hanash S. Multi-dimensional liquid phase based separations in proteomics. J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Apr 05; 787(1):11-8. PMID: 12659729.
      Citations: 25     Fields:    
    342. Chen G, Gharib TG, Thomas DG, Huang CC, Misek DE, Kuick RD, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Proteomic analysis of eIF-5A in lung adenocarcinomas. Proteomics. 2003 Apr; 3(4):496-504. PMID: 12687616.
      Citations: 14     Fields:    Translation:HumansCells
    343. Ichiba T, Teshima T, Kuick R, Misek DE, Liu C, Takada Y, Maeda Y, Reddy P, Williams DL, Hanash SM, Ferrara JL. Early changes in gene expression profiles of hepatic GVHD uncovered by oligonucleotide microarrays. Blood. 2003 Jul 15; 102(2):763-71. PMID: 12663442.
      Citations: 35     Fields:    Translation:AnimalsCells
    344. Hanash S. Disease proteomics. Nature. 2003 Mar 13; 422(6928):226-32. PMID: 12634796.
      Citations: 215     Fields:    Translation:Humans
    345. Chen G, Wang H, Gharib TG, Huang CC, Thomas DG, Shedden KA, Kuick R, Taylor JM, Kardia SL, Misek DE, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Overexpression of oncoprotein 18 correlates with poor differentiation in lung adenocarcinomas. Mol Cell Proteomics. 2003 Feb; 2(2):107-16. PMID: 12644570.
      Citations: 24     Fields:    Translation:HumansCells
    346. Giordano TJ, Thomas DG, Kuick R, Lizyness M, Misek DE, Smith AL, Sanders D, Aljundi RT, Gauger PG, Thompson NW, Taylor JM, Hanash SM. Distinct transcriptional profiles of adrenocortical tumors uncovered by DNA microarray analysis. Am J Pathol. 2003 Feb; 162(2):521-31. PMID: 12547710; PMCID: PMC1851158.
      Citations: 122     Fields:    Translation:HumansCells
    347. Mo R, Chen J, Han Y, Bueno-Cannizares C, Misek DE, Lescure PA, Hanash S, Yung RL. T cell chemokine receptor expression in aging. J Immunol. 2003 Jan 15; 170(2):895-904. PMID: 12517955.
      Citations: 40     Fields:    Translation:AnimalsCells
    348. Hanash S. Harnessing immunity for cancer marker discovery. Nat Biotechnol. 2003 Jan; 21(1):37-8. PMID: 12511908.
      Citations: 20     Fields:    Translation:HumansCells
    349. Creighton C, Hanash S. Expression of matrix metalloproteinase 9 (MMP-9/gelatinase B) in adenocarcinomas strongly correlated with expression of immune response genes. In Silico Biol. 2003; 3(3):301-11. PMID: 12954092.
      Citations: 9     Fields:    Translation:Humans
    350. Hanash S, Creighton C. Making sense of microarray data to classify cancer. Pharmacogenomics J. 2003; 3(6):308-11. PMID: 14597962.
      Citations: 2     Fields:    Translation:Humans
    351. Creighton C, Hanash S. Mining gene expression databases for association rules. Bioinformatics. 2003 Jan; 19(1):79-86. PMID: 12499296.
      Citations: 53     Fields:    Translation:Animals
    352. Madoz-Gurpide J, Hanash SM. Molecular analysis of cancer using DNA and protein microarrays. Adv Exp Med Biol. 2003; 532:51-8. PMID: 12908549.
      Citations:    Fields:    Translation:HumansCells
    353. Shin BK, Wang H, Yim AM, Le Naour F, Brichory F, Jang JH, Zhao R, Puravs E, Tra J, Michael CW, Misek DE, Hanash SM. Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. J Biol Chem. 2003 Feb 28; 278(9):7607-16. PMID: 12493773.
      Citations: 190     Fields:    Translation:HumansCells
    354. Moran CJ, Arenberg DA, Huang CC, Giordano TJ, Thomas DG, Misek DE, Chen G, Iannettoni MD, Orringer MB, Hanash S, Beer DG. RANTES expression is a predictor of survival in stage I lung adenocarcinoma. Clin Cancer Res. 2002 Dec; 8(12):3803-12. PMID: 12473593.
      Citations: 42     Fields:    Translation:Humans
    355. Richards J, Le Naour F, Hanash S, Beretta L. Integrated genomic and proteomic analysis of signaling pathways in dendritic cell differentiation and maturation. Ann N Y Acad Sci. 2002 Dec; 975:91-100. PMID: 12538157.
      Citations: 16     Fields:    Translation:HumansAnimalsCells
    356. Hinoi T, Lucas PC, Kuick R, Hanash S, Cho KR, Fearon ER. CDX2 regulates liver intestine-cadherin expression in normal and malignant colon epithelium and intestinal metaplasia. Gastroenterology. 2002 Nov; 123(5):1565-77. PMID: 12404231.
      Citations: 83     Fields:    Translation:HumansAnimalsCells
    357. Shin BK, Wang H, Hanash S. Proteomics approaches to uncover the repertoire of circulating biomarkers for breast cancer. J Mammary Gland Biol Neoplasia. 2002 Oct; 7(4):407-13. PMID: 12882525.
      Citations: 9     Fields:    Translation:Humans
    358. Lin L, Miller CT, Contreras JI, Prescott MS, Dagenais SL, Wu R, Yee J, Orringer MB, Misek DE, Hanash SM, Glover TW, Beer DG. The hepatocyte nuclear factor 3 alpha gene, HNF3alpha (FOXA1), on chromosome band 14q13 is amplified and overexpressed in esophageal and lung adenocarcinomas. Cancer Res. 2002 Sep 15; 62(18):5273-9. PMID: 12234996.
      Citations: 64     Fields:    Translation:HumansCells
    359. Gharib TG, Chen G, Wang H, Huang CC, Prescott MS, Shedden K, Misek DE, Thomas DG, Giordano TJ, Taylor JM, Kardia S, Yee J, Orringer MB, Hanash S, Beer DG. Proteomic analysis of cytokeratin isoforms uncovers association with survival in lung adenocarcinoma. Neoplasia. 2002 Sep-Oct; 4(5):440-8. PMID: 12192603; PMCID: PMC1661678.
      Citations: 16     Fields:    Translation:Humans
    360. Tra J, Kondo T, Lu Q, Kuick R, Hanash S, Richardson B. Infrequent occurrence of age-dependent changes in CpG island methylation as detected by restriction landmark genome scanning. Mech Ageing Dev. 2002 Sep; 123(11):1487-503. PMID: 12425956.
      Citations: 17     Fields:    Translation:HumansAnimalsCells
    361. Misek DE, Chang CL, Kuick R, Hinderer R, Giordano TJ, Beer DG, Hanash SM. Transforming properties of a Q18-->E mutation of the microtubule regulator Op18. Cancer Cell. 2002 Sep; 2(3):217-28. PMID: 12242154.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    362. Zhu X, Wimmer K, Kuick R, Lamb BJ, Motyka S, Jasty R, Castle VP, Hanash SM. N-myc modulates expression of p73 in neuroblastoma. Neoplasia. 2002 Sep-Oct; 4(5):432-9. PMID: 12192602; PMCID: PMC1564122.
      Citations: 11     Fields:    Translation:HumansCells
    363. Schwartz DR, Kardia SL, Shedden KA, Kuick R, Michailidis G, Taylor JM, Misek DE, Wu R, Zhai Y, Darrah DM, Reed H, Ellenson LH, Giordano TJ, Fearon ER, Hanash SM, Cho KR. Gene expression in ovarian cancer reflects both morphology and biological behavior, distinguishing clear cell from other poor-prognosis ovarian carcinomas. Cancer Res. 2002 Aug 15; 62(16):4722-9. PMID: 12183431.
      Citations: 151     Fields:    Translation:Humans
    364. Wang H, Hanash SM. Contributions of proteome profiling to the molecular analysis of cancer. Technol Cancer Res Treat. 2002 Aug; 1(4):237-46. PMID: 12625782.
      Citations: 2     Fields:    Translation:Humans
    365. Ross SE, Erickson RL, Gerin I, DeRose PM, Bajnok L, Longo KA, Misek DE, Kuick R, Hanash SM, Atkins KB, Andresen SM, Nebb HI, Madsen L, Kristiansen K, MacDougald OA. Microarray analyses during adipogenesis: understanding the effects of Wnt signaling on adipogenesis and the roles of liver X receptor alpha in adipocyte metabolism. Mol Cell Biol. 2002 Aug; 22(16):5989-99. PMID: 12138207; PMCID: PMC133961.
      Citations: 88     Fields:    Translation:HumansAnimalsCells
    366. Hanash S. Samir Hanash discusses how HUPO aims to globalize proteomics research (interview by Joanna Owens). Drug Discov Today. 2002 Aug 01; 7(15):797-801. PMID: 12546963.
      Citations:    Fields:    Translation:Humans
    367. Brichory F, Beretta L, Hanash SM, Naour FL. Identification of tumor-associated antigens using proteomics. Technol Cancer Res Treat. 2002 Aug; 1(4):257-62. PMID: 12625784.
      Citations: 9     Fields:    Translation:Humans
    368. Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen G, Gharib TG, Thomas DG, Lizyness ML, Kuick R, Hayasaka S, Taylor JM, Iannettoni MD, Orringer MB, Hanash S. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med. 2002 Aug; 8(8):816-24. PMID: 12118244.
      Citations: 683     Fields:    Translation:Humans
    369. Chen G, Gharib TG, Huang CC, Thomas DG, Shedden KA, Taylor JM, Kardia SL, Misek DE, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Proteomic analysis of lung adenocarcinoma: identification of a highly expressed set of proteins in tumors. Clin Cancer Res. 2002 Jul; 8(7):2298-305. PMID: 12114434.
      Citations: 90     Fields:    Translation:Humans
    370. Hanash S, Celis JE. The Human Proteome Organization: a mission to advance proteome knowledge. Mol Cell Proteomics. 2002 Jun; 1(6):413-4. PMID: 12169681.
      Citations: 13     Fields:    Translation:Humans
    371. Girard S, Shalhoub P, Lescure P, Sabile A, Misek DE, Hanash S, Beretta L, Br?chot C. An altered cellular response to interferon and up-regulation of interleukin-8 induced by the hepatitis C viral protein NS5A uncovered by microarray analysis. Virology. 2002 Apr 10; 295(2):272-83. PMID: 12033786.
      Citations: 17     Fields:    Translation:HumansCells
    372. Grolleau A, Bowman J, Puravs E, Hanash S, Garcia-Sanz JA, Beretta L, Pradet-Balade B. Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics. J Biol Chem. 2002 Jun 21; 277(25):22175-84. PMID: 11943782.
      Citations: 73     Fields:    Translation:HumansCells
    373. Leung JY, Kolligs FT, Wu R, Zhai Y, Kuick R, Hanash S, Cho KR, Fearon ER. Activation of AXIN2 expression by beta-catenin-T cell factor. A feedback repressor pathway regulating Wnt signaling. J Biol Chem. 2002 Jun 14; 277(24):21657-65. PMID: 11940574.
      Citations: 187     Fields:    Translation:HumansCells
    374. Hanash SM, Madoz-Gurpide J, Misek DE. Identification of novel targets for cancer therapy using expression proteomics. Leukemia. 2002 Apr; 16(4):478-85. PMID: 11960325.
      Citations: 8     Fields:    Translation:Humans
    375. Chen G, Gharib TG, Huang CC, Taylor JM, Misek DE, Kardia SL, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, Beer DG. Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics. 2002 Apr; 1(4):304-13. PMID: 12096112.
      Citations: 347     Fields:    Translation:HumansCells
    376. Zhu Xx XX, Rouillard JM, Ambros PF, Lamb BJ, Kuick R, Eckart M, Fonatsch C, Hanash SM, Wimmer K, Weinh?usl A. Combined restriction landmark genomic scanning and virtual genome scans identify a novel human homeobox gene, ALX3, that is hypermethylated in neuroblastoma. Genes Chromosomes Cancer. 2002 Mar; 33(3):285-94. PMID: 11807986.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    377. Brichory F, Misek DE, Hanash SM, Beretta L, Le Naour F, Br?chot C. A distinct repertoire of autoantibodies in hepatocellular carcinoma identified by proteomic analysis. Mol Cell Proteomics. 2002 Mar; 1(3):197-203. PMID: 12096119.
      Citations: 43     Fields:    Translation:Humans
    378. Hanash SM, Beretta LM. Operomics: integrated genomic and proteomic profiling of cells and tissues. Brief Funct Genomic Proteomic. 2002 Feb; 1(1):10-22. PMID: 15251063.
      Citations: 2     Fields:    Translation:HumansCells
    379. Li JY, Lescure PA, Misek DE, Lai YM, Chai BX, Kuick R, Thompson RC, Demo RM, Kurnit DM, Michailidis G, Hanash SM, Gantz I. Food deprivation-induced expression of minoxidil sulfotransferase in the hypothalamus uncovered by microarray analysis. J Biol Chem. 2002 Mar 15; 277(11):9069-76. PMID: 11782476.
      Citations: 9     Fields:    Translation:Animals
    380. Hanash SM, Bobek MP, Rickman DS, Williams T, Rouillard JM, Kuick R, Puravs E. Integrating cancer genomics and proteomics in the post-genome era. Proteomics. 2002 Jan; 2(1):69-75. PMID: 11788993.
      Citations: 20     Fields:    Translation:Humans
    381. Hanash SM. Global profiling of gene expression in cancer using genomics and proteomics. Curr Opin Mol Ther. 2001 Dec; 3(6):538-45. PMID: 11804268.
      Citations: 4     Fields:    Translation:Humans
    382. Ehrlich M, Buchanan KL, Tsien F, Jiang G, Sun B, Uicker W, Weemaes CM, Smeets D, Sperling K, Belohradsky BH, Tommerup N, Misek DE, Rouillard JM, Kuick R, Hanash SM. DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes. Hum Mol Genet. 2001 Dec 01; 10(25):2917-31. PMID: 11741835.
      Citations: 36     Fields:    Translation:HumansCells
    383. Hanash S, Petricoin E, Liotta L. A meeting of minds in proteomics. Proteomics. 2001 Dec; 1(12):1475-8. PMID: 11822353.
      Citations:    Fields:    Translation:Humans
    384. Brichory F, Beer D, Le Naour F, Giordano T, Hanash S. Proteomics-based identification of protein gene product 9.5 as a tumor antigen that induces a humoral immune response in lung cancer. Cancer Res. 2001 Nov 01; 61(21):7908-12. PMID: 11691811.
      Citations: 47     Fields:    Translation:Humans
    385. Erson AE, Niell BL, DeMers SK, Rouillard JM, Hanash SM, Petty EM. Overexpressed genes/ESTs and characterization of distinct amplicons on 17q23 in breast cancer cells. Neoplasia. 2001 Nov-Dec; 3(6):521-6. PMID: 11774034; PMCID: PMC1506561.
      Citations: 3     Fields:    Translation:HumansCells
    386. Chang CL, Hora N, Huberman N, Hinderer R, Kukuruga M, Hanash SM. Oncoprotein 18 levels and phosphorylation mediate megakaryocyte polyploidization in human erythroleukemia cells. Proteomics. 2001 Nov; 1(11):1415-23. PMID: 11922601.
      Citations: 4     Fields:    Translation:HumansCells
    387. Le Naour F, Misek DE, Krause MC, Deneux L, Giordano TJ, Scholl S, Hanash SM. Proteomics-based identification of RS/DJ-1 as a novel circulating tumor antigen in breast cancer. Clin Cancer Res. 2001 Nov; 7(11):3328-35. PMID: 11705844.
      Citations: 78     Fields:    Translation:HumansCells
    388. Wang H, Misek DE, Brichory F, Hanash SM, Madoz-G?rpide J. Protein based microarrays: a tool for probing the proteome of cancer cells and tissues. Proteomics. 2001 Oct; 1(10):1279-87. PMID: 11721639.
      Citations: 17     Fields:    Translation:HumansCells
    389. Srinivas PR, Srivastava S, Hanash S, Wright GL. Proteomics in early detection of cancer. Clin Chem. 2001 Oct; 47(10):1901-11. PMID: 11568117.
      Citations: 42     Fields:    Translation:Humans
    390. Giordano TJ, Shedden KA, Schwartz DR, Kuick R, Taylor JM, Lee N, Misek DE, Greenson JK, Kardia SL, Beer DG, Rennert G, Cho KR, Gruber SB, Fearon ER, Hanash S. Organ-specific molecular classification of primary lung, colon, and ovarian adenocarcinomas using gene expression profiles. Am J Pathol. 2001 Oct; 159(4):1231-8. PMID: 11583950; PMCID: PMC1850519.
      Citations: 51     Fields:    Translation:Humans
    391. Oh JM, Brichory F, Puravs E, Kuick R, Wood C, Rouillard JM, Tra J, Kardia S, Beer D, Hanash S. A database of protein expression in lung cancer. Proteomics. 2001 Oct; 1(10):1303-19. PMID: 11721642.
      Citations: 9     Fields:    Translation:Humans
    392. Waghray A, Feroze F, Schober MS, Yao F, Wood C, Puravs E, Krause M, Hanash S, Chen YQ. Identification of androgen-regulated genes in the prostate cancer cell line LNCaP by serial analysis of gene expression and proteomic analysis. Proteomics. 2001 Oct; 1(10):1327-38. PMID: 11721644.
      Citations: 20     Fields:    Translation:HumansCells
    393. Hanash S. Mining the cancer proteome. Proteomics. 2001 Oct; 1(10):1189-90. PMID: 11721630.
      Citations:    Fields:    
    394. Rickman DS, Bobek MP, Misek DE, Kuick R, Blaivas M, Kurnit DM, Taylor J, Hanash SM. Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis. Cancer Res. 2001 Sep 15; 61(18):6885-91. PMID: 11559565.
      Citations: 113     Fields:    Translation:HumansCells
    395. Verma M, Wright GL, Hanash SM, Gopal-Srivastava R, Srivastava S. Proteomic approaches within the NCI early detection research network for the discovery and identification of cancer biomarkers. Ann N Y Acad Sci. 2001 Sep; 945:103-15. PMID: 11708463.
      Citations: 14     Fields:    Translation:Humans
    396. Brichory F, Hanash S, Bourguet P, Dazord L, Le Pennec JP, Bidon N. Two messenger RNAs and five isoforms for Po66-CBP, a galectin-8 homolog in a human lung carcinoma cell line. Gene. 2001 Aug 22; 274(1-2):253-62. PMID: 11675018.
      Citations: 14     Fields:    Translation:HumansCells
    397. Brichory FM, Misek DE, Yim AM, Krause MC, Giordano TJ, Beer DG, Hanash SM. An immune response manifested by the common occurrence of annexins I and II autoantibodies and high circulating levels of IL-6 in lung cancer. Proc Natl Acad Sci U S A. 2001 Aug 14; 98(17):9824-9. PMID: 11504947; PMCID: PMC55537.
      Citations: 87     Fields:    Translation:HumansCells
    398. Rouillard JM, Erson AE, Kuick R, Asakawa J, Wimmer K, Muleris M, Petty EM, Hanash S. Virtual genome scan: a tool for restriction landmark-based scanning of the human genome. Genome Res. 2001 Aug; 11(8):1453-9. PMID: 11483587; PMCID: PMC311067.
      Citations: 13     Fields:    Translation:HumansCells
    399. Yung R, Ray D, Eisenbraun JK, Deng C, Attwood J, Eisenbraun MD, Johnson K, Miller RA, Hanash S, Richardson B. Unexpected effects of a heterozygous dnmt1 null mutation on age-dependent DNA hypomethylation and autoimmunity. J Gerontol A Biol Sci Med Sci. 2001 Jun; 56(6):B268-76. PMID: 11382789.
      Citations: 9     Fields:    Translation:AnimalsCells
    400. Hanash S. 2-D or not 2-D--is there a future for 2-D gels in proteomics? Insights from the York proteomics meeting. Proteomics. 2001 May; 1(5):635-7. PMID: 11678032.
      Citations: 5     Fields:    
    401. Le Naour F, Hohenkirk L, Grolleau A, Misek DE, Lescure P, Geiger JD, Hanash S, Beretta L. Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics. J Biol Chem. 2001 May 25; 276(21):17920-31. PMID: 11279020.
      Citations: 83     Fields:    Translation:HumansCells
    402. Rickman DS, Tyagi R, Zhu XX, Bobek MP, Song S, Blaivas M, Misek DE, Israel MA, Kurnit DM, Ross DA, Kish PE, Hanash SM. The gene for the axonal cell adhesion molecule TAX-1 is amplified and aberrantly expressed in malignant gliomas. Cancer Res. 2001 Mar 01; 61(5):2162-8. PMID: 11280781.
      Citations: 10     Fields:    Translation:HumansCells
    403. Deng C, Kaplan MJ, Yang J, Ray D, Zhang Z, McCune WJ, Hanash SM, Richardson BC. Decreased Ras-mitogen-activated protein kinase signaling may cause DNA hypomethylation in T lymphocytes from lupus patients. Arthritis Rheum. 2001 Feb; 44(2):397-407. PMID: 11229472.
      Citations: 85     Fields:    Translation:HumansCells
    404. Le Naour F, Oualid M, Billard M, Faure G, Hanash SM, Boucheix C, Rubinstein E, Charrin S. The major CD9 and CD81 molecular partner. Identification and characterization of the complexes. J Biol Chem. 2001 Apr 27; 276(17):14329-37. PMID: 11278880.
      Citations: 92     Fields:    Translation:HumansAnimalsCells
    405. Hiyama E, Hiyama K, Ohtsu K, Yamaoka H, Fukuba I, Matsuura Y, Yokoyama T. Biological characteristics of neuroblastoma with partial deletion in the short arm of chromosome 1. Med Pediatr Oncol. 2001 Jan; 36(1):67-74. PMID: 11464909.
      Citations: 6     Fields:    Translation:HumansCellsPHPublic Health
    406. Hanash S, Brichory F, Beer D. A proteomic approach to the identification of lung cancer markers. Dis Markers. 2001; 17(4):295-300. PMID: 11790896; PMCID: PMC3851379.
      Citations: 5     Fields:    Translation:Humans
    407. Wimmer K, Zhu XX, Lamb BJ, Kuick R, Ambros P, Kovar H, Thoraval D, Elkahloun A, Meltzer P, Hanash SM. Two-dimensional DNA electrophoresis identifies novel CpG islands frequently coamplified with MYCN in neuroblastoma. Med Pediatr Oncol. 2001 Jan; 36(1):75-9. PMID: 11464910.
      Citations: 1     Fields:    Translation:HumansCells
    408. Lin L, Prescott MS, Zhu Z, Singh P, Chun SY, Kuick RD, Hanash SM, Orringer MB, Glover TW, Beer DG. Identification and characterization of a 19q12 amplicon in esophageal adenocarcinomas reveals cyclin E as the best candidate gene for this amplicon. Cancer Res. 2000 Dec 15; 60(24):7021-7. PMID: 11156406.
      Citations: 16     Fields:    Translation:HumansCells
    409. Kaplan MJ, Hanash SM, Beretta L, Richardson B, Grolleau A. Impaired translational response and increased protein kinase PKR expression in T cells from lupus patients. J Clin Invest. 2000 Dec; 106(12):1561-8. PMID: 11120763; PMCID: PMC381471.
      Citations: 16     Fields:    Translation:HumansCells
    410. Prasannan L, Misek DE, Hinderer R, Michon J, Geiger JD, Hanash SM. Identification of beta-tubulin isoforms as tumor antigens in neuroblastoma. Clin Cancer Res. 2000 Oct; 6(10):3949-56. PMID: 11051243.
      Citations: 19     Fields:    Translation:HumansCells
    411. Hanash SM. Operomics: molecular analysis of tissues from DNA to RNA to protein. Clin Chem Lab Med. 2000 Sep; 38(9):805-13. PMID: 11097332.
      Citations: 1     Fields:    Translation:Humans
    412. Hanash SM. Biomedical applications of two-dimensional electrophoresis using immobilized pH gradients: current status. Electrophoresis. 2000 Apr; 21(6):1202-9. PMID: 10786892.
      Citations: 22     Fields:    Translation:HumansAnimals
    413. Wall DB, Kachman MT, Gong S, Hinderer R, Parus S, Misek DE, Hanash SM, Lubman DM. Isoelectric focusing nonporous RP HPLC: a two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry. Anal Chem. 2000 Mar 15; 72(6):1099-111. PMID: 10740846.
      Citations: 20     Fields:    Translation:HumansCells
    414. Kondo T, Bobek MP, Kuick R, Lamb B, Zhu X, Narayan A, Bourc'his D, Ehrlich M, Hanash SM, Viegas-P?quignot E. Whole-genome methylation scan in ICF syndrome: hypomethylation of non-satellite DNA repeats D4Z4 and NBL2. Hum Mol Genet. 2000 Mar 01; 9(4):597-604. PMID: 10699183.
      Citations: 59     Fields:    Translation:HumansCells
    415. Lin L, Aggarwal S, Glover TW, Orringer MB, Hanash S, Beer DG. A minimal critical region of the 8p22-23 amplicon in esophageal adenocarcinomas defined using sequence tagged site-amplification mapping and quantitative polymerase chain reaction includes the GATA-4 gene. Cancer Res. 2000 Mar 01; 60(5):1341-7. PMID: 10728696.
      Citations: 19     Fields:    Translation:HumansCells
    416. Zhu X, Deng C, Kuick R, Yung R, Lamb B, Neel JV, Richardson B, Hanash S. Analysis of human peripheral blood T cells and single-cell-derived T cell clones uncovers extensive clonal CpG island methylation heterogeneity throughout the genome. Proc Natl Acad Sci U S A. 1999 Jul 06; 96(14):8058-63. PMID: 10393947; PMCID: PMC22187.
      Citations: 7     Fields:    Translation:HumansCells
    417. Schickle H, Lamb BJ, Hanash SM. Horizontal two-dimensional electrophoresis of complex DNA samples using precast gel systems. Electrophoresis. 1999 Jun; 20(6):1233-8. PMID: 10380763.
      Citations:    Fields:    Translation:Humans
    418. Oh JM, Hanash SM, Teichroew D. Mining protein data from two-dimensional gels: tools for systematic post-planned analyses. Electrophoresis. 1999 Apr-May; 20(4-5):766-74. PMID: 10344246.
      Citations: 2     Fields:    
    419. Soldes OS, Kuick RD, Thompson IA, Hughes SJ, Orringer MB, Iannettoni MD, Hanash SM, Beer DG. Differential expression of Hsp27 in normal oesophagus, Barrett's metaplasia and oesophageal adenocarcinomas. Br J Cancer. 1999 Feb; 79(3-4):595-603. PMID: 10027336; PMCID: PMC2362445.
      Citations: 35     Fields:    Translation:HumansCells
    420. Muleris M, Li Y, Hanash S, Terris B, Hammel P, Pibouin L, Dutrillaux B, Goubin G, Ferbus D, Fl?chon A. Amplification and over-expression of OZF, a gene encoding a zinc finger protein, in human pancreatic carcinomas. Int J Cancer. 1999 Jan 29; 80(3):369-72. PMID: 9935176.
      Citations: 3     Fields:    Translation:HumansCells
    421. Wimmer K, Zhu XX, Lamb BJ, Kuick R, Ambros PF, Kovar H, Thoraval D, Motyka S, Alberts JR, Hanash SM. Co-amplification of a novel gene, NAG, with the N-myc gene in neuroblastoma. Oncogene. 1999 Jan 07; 18(1):233-8. PMID: 9926938.
      Citations: 27     Fields:    Translation:HumansCells
    422. Jin X, Chen Y, Lubman DM, Misek D, Hanash SM. Capillary electrophoresis/tandem mass spectrometry for analysis of proteins from two-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis. Rapid Commun Mass Spectrom. 1999; 13(23):2327-34. PMID: 10567930.
      Citations: 2     Fields:    Translation:Humans
    423. Chen Y, Jin X, Misek D, Hinderer R, Hanash SM, Lubman DM. Identification of proteins from two-dimensional gel electrophoresis of human erythroleukemia cells using capillary high performance liquid chromatography/electrospray-ion trap-reflectron time-of-flight mass spectrometry with two-dimensional topographic map analysis of in-gel tryptic digest products. Rapid Commun Mass Spectrom. 1999; 13(19):1907-16. PMID: 10487937.
      Citations: 2     Fields:    Translation:HumansCells
    424. Hughes SJ, Glover TW, Zhu XX, Kuick R, Thoraval D, Orringer MB, Beer DG, Hanash S. A novel amplicon at 8p22-23 results in overexpression of cathepsin B in esophageal adenocarcinoma. Proc Natl Acad Sci U S A. 1998 Oct 13; 95(21):12410-5. PMID: 9770500; PMCID: PMC22845.
      Citations: 26     Fields:    Translation:HumansCells
    425. Curtis LJ, Li Y, Gerbault-Seureau M, Kuick R, Dutrillaux AM, Goubin G, Fawcett J, Cram S, Dutrillaux B, Hanash S, Muleris M. Amplification of DNA sequences from chromosome 19q13.1 in human pancreatic cell lines. Genomics. 1998 Oct 01; 53(1):42-55. PMID: 9787076.
      Citations: 12     Fields:    Translation:HumansCells
    426. Deng C, Yang J, Scott J, Hanash S, Richardson BC. Role of the ras-MAPK signaling pathway in the DNA methyltransferase response to DNA hypomethylation. Biol Chem. 1998 Aug-Sep; 379(8-9):1113-20. PMID: 9792444.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    427. Hanash SM, Teichroew D. Mining the human proteome: experience with the human lymphoid protein database. Electrophoresis. 1998 Aug; 19(11):2004-9. PMID: 9740061.
      Citations: 3     Fields:    Translation:HumansCells
    428. Almeida A, Zhu XX, Vogt N, Tyagi R, Muleris M, Dutrillaux AM, Dutrillaux B, Ross D, Malfoy B, Hanash S. GAC1, a new member of the leucine-rich repeat superfamily on chromosome band 1q32.1, is amplified and overexpressed in malignant gliomas. Oncogene. 1998 Jun 11; 16(23):2997-3002. PMID: 9662332.
      Citations: 19     Fields:    Translation:HumansCells
    429. Beretta L, Singer NG, Hinderer R, Gingras AC, Richardson B, Hanash SM, Sonenberg N. Differential regulation of translation and eIF4E phosphorylation during human thymocyte maturation. J Immunol. 1998 Apr 01; 160(7):3269-73. PMID: 9531283.
      Citations: 9     Fields:    Translation:HumansCells
    430. Melhem R, Hailat N, Kuick R, Hanash SM. Quantitative analysis of Op18 phosphorylation in childhood acute leukemia. Leukemia. 1997 Oct; 11(10):1690-5. PMID: 9324290.
      Citations: 7     Fields:    Translation:HumansCells
    431. Diaz LA, Friedman AW, He X, Kuick RD, Hanash SM, Fox DA. Monocyte-dependent regulation of T lymphocyte activation through CD98. Int Immunol. 1997 Sep; 9(9):1221-31. PMID: 9310825.
      Citations: 12     Fields:    Translation:HumansCells
    432. Yang J, Deng C, Hemati N, Hanash SM, Richardson BC. Effect of mitogenic stimulation and DNA methylation on human T cell DNA methyltransferase expression and activity. J Immunol. 1997 Aug 01; 159(3):1303-9. PMID: 9233626.
      Citations: 10     Fields:    Translation:HumansCells
    433. Bradford CR, Zhu S, Poore J, Fisher SG, Beals TF, Thoraval D, Hanash SM, Carey TE, Wolf GT. p53 mutation as a prognostic marker in advanced laryngeal carcinoma. Department of Veterans Affairs Laryngeal Cancer Cooperative Study Group. Arch Otolaryngol Head Neck Surg. 1997 Jun; 123(6):605-9. PMID: 9193221.
      Citations: 11     Fields:    Translation:HumansCTClinical Trials
    434. Wimmer K, Thoraval D, Kuick R, Lamb BJ, Hanash SM. Identification of amplifications, deletions and methylation changes in cancer by means of two-dimensional analysis of genomic digests: application to neuroblastoma. Biochem Soc Trans. 1997 Feb; 25(1):262-7. PMID: 9056881.
      Citations: 2     Fields:    Translation:HumansCells
    435. Tsukiyama-Kohara K, Vidal SM, Gingras AC, Glover TW, Hanash SM, Heng H, Sonenberg N. Tissue distribution, genomic structure, and chromosome mapping of mouse and human eukaryotic initiation factor 4E-binding proteins 1 and 2. Genomics. 1996 Dec 15; 38(3):353-63. PMID: 8975712.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    436. Wimmer K, Thoraval D, Asakawa J, Kuick R, Kodaira M, Lamb B, Fawcett J, Glover T, Cram S, Hanash S. Two-dimensional separation and cloning of chromosome 1 NotI-EcoRV-derived genomic fragments. Genomics. 1996 Dec 01; 38(2):124-32. PMID: 8954793.
      Citations: 4     Fields:    Translation:HumansCells
    437. Thoraval D, Asakawa J, Wimmer K, Kuick R, Lamb B, Richardson B, Ambros P, Glover T, Hanash S. Demethylation of repetitive DNA sequences in neuroblastoma. Genes Chromosomes Cancer. 1996 Dec; 17(4):234-44. PMID: 8946205.
      Citations: 15     Fields:    Translation:HumansCells
    438. Wimmer K, Kuick R, Thoraval D, Hanash SM. Two-dimensional separations of the genome and proteome of neuroblastoma cells. Electrophoresis. 1996 Nov; 17(11):1741-51. PMID: 8982607.
      Citations: 2     Fields:    Translation:Cells
    439. Kuick R, Asakawa J, Neel JV, Kodaira M, Satoh C, Thoraval D, Gonzalez IL, Hanash SM. Studies of the inheritance of human ribosomal DNA variants detected in two-dimensional separations of genomic restriction fragments. Genetics. 1996 Sep; 144(1):307-16. PMID: 8878694; PMCID: PMC1207503.
      Citations: 5     Fields:    Translation:HumansCells
    440. Hanash SM. A role for chromosome 1 in colorectal cancer. Gastroenterology. 1996 Jul; 111(1):250-2. PMID: 8698208.
      Citations: 3     Fields:    Translation:HumansCells
    441. Satoh C, Takahashi N, Asakawa J, Kodaira M, Kuick R, Hanash SM, Neel JV. Genetic analysis of children of atomic bomb survivors. Environ Health Perspect. 1996 May; 104 Suppl 3:511-9. PMID: 8781374; PMCID: PMC1469615.
      Citations: 9     Fields:    Translation:HumansCells
    442. Thoraval D, Asakawa J, Kodaira M, Chang C, Radany E, Kuick R, Lamb B, Richardson B, Neel JV, Glover T, Hanash S. A methylated human 9-kb repetitive sequence on acrocentric chromosomes is homologous to a subtelomeric repeat in chimpanzees. Proc Natl Acad Sci U S A. 1996 Apr 30; 93(9):4442-7. PMID: 8633086; PMCID: PMC39557.
      Citations: 6     Fields:    Translation:HumansAnimalsCells
    443. Gabbay M, Berger R, Hanash SM, Sonenberg N, Beretta L. Expression of the protein kinase PKR in modulated by IRF-1 and is reduced in 5q- associated leukemias. Oncogene. 1996 Apr 04; 12(7):1593-6. PMID: 8622878.
      Citations: 19     Fields:    Translation:HumansCells
    444. Chang CL, Strahler JR, Thoraval DH, Qian MG, Hinderer R, Hanash SM. A nucleoside diphosphate kinase A (nm23-H1) serine 120-->glycine substitution in advanced stage neuroblastoma affects enzyme stability and alters protein-protein interaction. Oncogene. 1996 Feb 01; 12(3):659-67. PMID: 8637723.
      Citations: 16     Fields:    Translation:HumansCells
    445. Qian MG, Zheng K, Chen Y, Chang CL, Hanash SM, Lubman DM. Capillary liquid chromatography coupled with an ion trap storage/reflectron time-of-flight mass spectrometer for structural confirmation of three recombinant protein isoforms. Rapid Commun Mass Spectrom. 1996; 10(9):1079-87. PMID: 8755237.
      Citations: 2     Fields:    Translation:HumansCells
    446. Sullivan KA, Castle VP, Hanash SM, Feldman EL. Insulin-like growth factor II in the pathogenesis of human neuroblastoma. Am J Pathol. 1995 Dec; 147(6):1790-8. PMID: 7495303; PMCID: PMC1869938.
      Citations: 11     Fields:    Translation:Humans
    447. Hailat NQ, Hanash SM. A technique for identification of cellular proteins by western immunoblotting and immunoautoradiography of 2-D PAGE. Indian J Biochem Biophys. 1995 Oct; 32(5):240-4. PMID: 8713743.
      Citations:    Fields:    Translation:HumansCells
    448. Vila LM, Haftel HM, Park HS, Lin MS, Romzek NC, Hanash SM, Holoshitz J. Expansion of mycobacterium-reactive gamma delta T cells by a subset of memory helper T cells. Infect Immun. 1995 Apr; 63(4):1211-7. PMID: 7890374; PMCID: PMC173136.
      Citations: 7     Fields:    Translation:HumansCells
    449. Asakawa J, Kuick R, Neel JV, Kodaira M, Satoh C, Hanash SM. Quantitative and qualitative genetic variation in two-dimensional DNA gels of human lymphocytoid cell lines. Electrophoresis. 1995 Feb; 16(2):241-52. PMID: 7774565.
      Citations: 4     Fields:    Translation:HumansCells
    450. Hailata N, Johnson R, al-Bagdadi F, Hanash S. Proliferating cell nuclear antigen expression in sheep infected with bovine leukemia virus. Vet Immunol Immunopathol. 1995 Feb; 44(3-4):211-22. PMID: 7747402.
      Citations: 2     Fields:    Translation:AnimalsCells
    451. Kuick R, Asakawa J, Neel JV, Satoh C, Hanash SM. High yield of restriction fragment length polymorphisms in two-dimensional separations of human genomic DNA. Genomics. 1995 Jan 20; 25(2):345-53. PMID: 7789966.
      Citations: 10     Fields:    Translation:HumansCells
    452. Haftel HM, Chang Y, Hinderer R, Hanash SM, Holoshitz J. Induction of the autoantigen proliferating cell nuclear antigen in T lymphocytes by a mycobacterial antigen. J Clin Invest. 1994 Oct; 94(4):1365-72. PMID: 7929811; PMCID: PMC295257.
      Citations: 3     Fields:    Translation:HumansCells
    453. Asakawa J, Kuick R, Neel JV, Kodaira M, Satoh C, Hanash SM. Genetic variation detected by quantitative analysis of end-labeled genomic DNA fragments. Proc Natl Acad Sci U S A. 1994 Sep 13; 91(19):9052-6. PMID: 7916459; PMCID: PMC44745.
      Citations: 7     Fields:    Translation:HumansCells
    454. Chang CL, Zhu XX, Thoraval DH, Ungar D, Rawwas J, Hora N, Strahler JR, Hanash SM, Radany E. Nm23-H1 mutation in neuroblastoma. Nature. 1994 Aug 04; 370(6488):335-6. PMID: 8047138.
      Citations: 45     Fields:    Translation:Humans
    455. Ungar DR, Hailat N, Strahler JR, Kuick RD, Brodeur GM, Seeger RC, Reynolds CP, Hanash SM. Hsp27 expression in neuroblastoma: correlation with disease stage. J Natl Cancer Inst. 1994 May 18; 86(10):780-4. PMID: 8169976.
      Citations: 9     Fields:    Translation:HumansCells
    456. Hanash SM, Beretta L, Barcroft CL, Sheldon S, Glover TW, Ungar D, Sonenberg N. Mapping of the gene for interferon-inducible dsRNA-dependent protein kinase to chromosome region 2p21-22: a site of rearrangements in myeloproliferative disorders. Genes Chromosomes Cancer. 1993 Sep; 8(1):34-7. PMID: 7691157.
      Citations: 4     Fields:    Translation:HumansCells
    457. Wang YK, Liao PC, Allison J, Gage DA, Andrews PC, Lubman DM, Hanash SM, Strahler JR. Phorbol 12-myristate 13-acetate-induced phosphorylation of Op18 in Jurkat T cells. Identification of phosphorylation sites by matrix-assisted laser desorption ionization mass spectrometry. J Biol Chem. 1993 Jul 05; 268(19):14269-77. PMID: 8314790.
      Citations: 8     Fields:    Translation:HumansCells
    458. Strahler JR, Zhu XX, Hora N, Wang YK, Andrews PC, Roseman NA, Neel JV, Turka L, Hanash SM. Maturation stage and proliferation-dependent expression of dUTPase in human T cells. Proc Natl Acad Sci U S A. 1993 Jun 01; 90(11):4991-5. PMID: 8389461; PMCID: PMC46639.
      Citations: 14     Fields:    Translation:HumansCells
    459. Hanash SM, Strahler JR, Chan Y, Kuick R, Teichroew D, Neel JV, Hailat N, Keim DR, Gratiot-Deans J, Ungar D, et al. Data base analysis of protein expression patterns during T-cell ontogeny and activation. Proc Natl Acad Sci U S A. 1993 Apr 15; 90(8):3314-8. PMID: 8475073; PMCID: PMC46290.
      Citations: 4     Fields:    Translation:HumansCells
    460. Turka LA, Gratiot-Deans J, Keim D, Bandukwala R, Green J, Strahler J, Hanash SM. Elevated proliferating cell nuclear antigen levels in immature thymocytes. Dissociation from cell cycle progression. J Immunol. 1993 Apr 01; 150(7):2746-52. PMID: 8095955.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    461. Keim DR, Hailat N, Kuick R, Reynolds CP, Brodeur GM, Seeger RC, Hanash SM. PCNA levels in neuroblastoma are increased in tumors with an amplified N-myc gene and in metastatic stage tumors. Clin Exp Metastasis. 1993 Jan; 11(1):83-90. PMID: 8093685.
      Citations: 4     Fields:    Translation:HumansCells
    462. Gratiot-Deans J, Keim D, Strahler JR, Turka LA, Hanash S. Differential expression of Op18 phosphoprotein during human thymocyte maturation. J Clin Invest. 1992 Oct; 90(4):1576-81. PMID: 1401087; PMCID: PMC443205.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    463. Strahler JR, Hailat N, Lamb BJ, Rogers KP, Underhill JA, Melhem RF, Keim DR, Zhu X, Kuick RD, Fox DA, et al. Activation of resting peripheral blood lymphocytes through the T cell receptor induces rapid phosphorylation of Op18. J Immunol. 1992 Aug 15; 149(4):1191-8. PMID: 1500712.
      Citations: 8     Fields:    Translation:HumansCells
    464. Kuick RD, Neel JV, Strahler JR, Chu EH, Bargal R, Fox DA, Hanash SM. Similarity of spontaneous germinal and in vitro somatic cell mutation rates in humans: implications for carcinogenesis and for the role of exogenous factors in "spontaneous" germinal mutagenesis. Proc Natl Acad Sci U S A. 1992 Aug 01; 89(15):7036-40. PMID: 1495998; PMCID: PMC49640.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    465. Richardson BC, Strahler JR, Pivirotto TS, Quddus J, Bayliss GE, Gross LA, O'Rourke KS, Powers D, Hanash SM, Johnson MA. Phenotypic and functional similarities between 5-azacytidine-treated T cells and a T cell subset in patients with active systemic lupus erythematosus. Arthritis Rheum. 1992 Jun; 35(6):647-62. PMID: 1376122.
      Citations: 47     Fields:    Translation:HumansCells
    466. Strahler JR, Lamb BJ, Ungar DR, Fox DA, Hanash SM. Cell cycle progression is associated with distinct patterns of phosphorylation of Op18. Biochem Biophys Res Commun. 1992 May 29; 185(1):197-203. PMID: 1376116.
      Citations: 8     Fields:    Translation:HumansCells
    467. Keim D, Hailat N, Melhem R, Zhu XX, Lascu I, Veron M, Strahler J, Hanash SM. Proliferation-related expression of p19/nm23 nucleoside diphosphate kinase. J Clin Invest. 1992 Mar; 89(3):919-24. PMID: 1311721; PMCID: PMC442938.
      Citations: 42     Fields:    Translation:HumansCells
    468. Kuick RD, Skolnick MM, Hanash SM, Neel JV. A two-dimensional electrophoresis-related laboratory information processing system: spot matching. Electrophoresis. 1991 Oct; 12(10):736-46. PMID: 1802691.
      Citations: 3     Fields:    
    469. Ali I, Chan Y, Kuick R, Teichroew D, Hanash SM. Implementation of a two-dimensional electrophoresis-related laboratory information processing system: database aspects. Electrophoresis. 1991 Oct; 12(10):747-61. PMID: 1802692.
      Citations: 1     Fields:    Translation:Humans
    470. Melhem RF, Strahler JR, Hailat N, Zhu XX, Hanash SM. Involvement of OP18 in cell proliferation. Biochem Biophys Res Commun. 1991 Sep 30; 179(3):1649-55. PMID: 1930203.
      Citations: 16     Fields:    Translation: