TitleAssociate Professor
InstitutionMD Anderson
DepartmentBioinformatics & Computational Biology
Address1400 Pressler St
Houston TX 77030-4008
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Cancer Genome Atlas Research Network. Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. 2014 Mar 20; 507(7492):315-22. PMID: 24476821; PMCID: PMC3962515.
      Citations: 1166     Fields:    Translation:HumansCells
    2. Ahn J, Liu S, Wang W, Yuan Y. Bayesian latent-class mixed-effect hybrid models for dyadic longitudinal data with non-ignorable dropouts. Biometrics. 2013 Dec; 69(4):914-24. PMID: 24328715; PMCID: PMC3970927.
      Citations: 1     Fields:    Translation:Humans
    3. Cancer Genome Atlas Research Network, Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet. 2013 Oct; 45(10):1113-20. PMID: 24071849; PMCID: PMC3919969.
      Citations: 2555     Fields:    Translation:Humans
    4. Srivastava S, Wang W, Manyam G, Ordonez C, Baladandayuthapani V. Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. EURASIP J Bioinform Syst Biol. 2013 Jun 28; 2013(1):9. PMID: 23809014; PMCID: PMC3726335.
      Citations: 3     
    5. Ahn J, Yuan Y, Parmigiani G, Suraokar MB, Diao L, Wistuba II, Wang W. DeMix: deconvolution for mixed cancer transcriptomes using raw measured data. Bioinformatics. 2013 Aug 01; 29(15):1865-71. PMID: 23712657; PMCID: PMC3841439.
      Citations: 42     Fields:    Translation:HumansAnimals
    6. Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi AK, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proc Natl Acad Sci U S A. 2013 Mar 05; 110(10):3985-90. PMID: 23426633; PMCID: PMC3593912.
      Citations: 30     Fields:    Translation:Humans
    7. Zhang N, Xu Y, O'Hely M, Speed TP, Scharfe C, Wang W. SRMA: an R package for resequencing array data analysis. Bioinformatics. 2012 Jul 15; 28(14):1928-30. PMID: 22581181; PMCID: PMC3389772.
      Citations:    Fields:    Translation:Humans
    8. Hua Y, Gorshkov K, Yang Y, Wang W, Zhang N, Hughes DP. Slow down to stay alive: HER4 protects against cellular stress and confers chemoresistance in neuroblastoma. Cancer. 2012 Oct 15; 118(20):5140-54. PMID: 22415601; PMCID: PMC3414637.
      Citations: 12     Fields:    Translation:HumansCells
    9. Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. High-quality DNA sequence capture of 524 disease candidate genes. Proc Natl Acad Sci U S A. 2011 Apr 19; 108(16):6549-54. PMID: 21467225; PMCID: PMC3080966.
      Citations: 29     Fields:    Translation:Humans
    10. Lin S, Wang W, Palm C, Davis RW, Juneau K. A molecular inversion probe assay for detecting alternative splicing. BMC Genomics. 2010 Dec 17; 11:712. PMID: 21167051; PMCID: PMC3022918.
      Citations: 4     Fields:    Translation:HumansCells
    11. Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Res. 2011 Jan; 39(1):44-58. PMID: 20843780; PMCID: PMC3017602.
      Citations: 11     Fields:    Translation:HumansCells
    12. Wang W, Niendorf KB, Patel D, Blackford A, Marroni F, Sober AJ, Parmigiani G, Tsao H. Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO. Cancer Res. 2010 Jan 15; 70(2):552-9. PMID: 20068151; PMCID: PMC2947347.
      Citations: 17     Fields:    Translation:Humans
    13. Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA. Estimating genome-wide copy number using allele-specific mixture models. J Comput Biol. 2008 Sep; 15(7):857-66. PMID: 18707534; PMCID: PMC2612042.
      Citations: 14     Fields:    Translation:Humans
    14. Wang W, Chen S, Brune KA, Hruban RH, Parmigiani G, Klein AP. PancPRO: risk assessment for individuals with a family history of pancreatic cancer. J Clin Oncol. 2007 Apr 10; 25(11):1417-22. PMID: 17416862; PMCID: PMC2267288.
      Citations: 83     Fields:    Translation:Humans
    15. Wang W, Ballana E, Estivill X, Gonz?lez JR. A recessive Mendelian model to predict carrier probabilities of DFNB1 for nonsyndromic deafness. Hum Mutat. 2006 Nov; 27(11):1135-42. PMID: 16941638; PMCID: PMC2268028.
      Citations:    Fields:    Translation:Humans
    16. Chen S, Wang W, Lee S, Nafa K, Lee J, Romans K, Watson P, Gruber SB, Euhus D, Kinzler KW, Jass J, Gallinger S, Lindor NM, Casey G, Ellis N, Giardiello FM, Offit K, Parmigiani G, Colon Cancer Family Registry. Prediction of germline mutations and cancer risk in the Lynch syndrome. JAMA. 2006 Sep 27; 296(12):1479-87. PMID: 17003396; PMCID: PMC2538673.
      Citations: 143     Fields:    Translation:Humans
    17. Xu Z, Sproul A, Wang W, Kukekov N, Greene LA. Siah1 interacts with the scaffold protein POSH to promote JNK activation and apoptosis. J Biol Chem. 2006 Jan 06; 281(1):303-12. PMID: 16230351.
      Citations: 32     Fields:    Translation:HumansAnimalsCells
    18. In reply [13]. Journal of Clinical Oncology. 25:5337-5338.
    19. The Molecular Taxonomy of Primary Prostate Cancer. Cell. 163:1011-1025.
    20. Estimating genome-wide copy number using allele specific mixture models. 137-150.
    21. Multiplex target capture with double-stranded DNA probes. Genome Medicine. 5.
    22. Identification of germline DICER1 mutations and loss of heterozygosity in familial Wilms tumour. Journal of Medical Genetics. 53:385-388.
    23. Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis. Journal of Molecular Diagnostics. 18:267-282.
    24. Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. 18-21.
    25. An ensemble approach to accurately detect somatic mutations using SomaticSeq. Genome Biology. 16.
    26. Bayesian variable selection for binary outcomes in high-dimensional genomic studies using non-local priors. Bioinformatics. 32:1338-1345.
    27. BayesMendel. Statistical Applications in Genetics and Molecular Biology. 3.
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