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TitleAssociate Professor
InstitutionMD Anderson
DepartmentBioinformatics & Computational Biology
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. 2014 Mar 20; 507(7492):315-22. PMID: 24476821.
      View in: PubMed
    2. Ahn J, Liu S, Wang W, Yuan Y. Bayesian latent-class mixed-effect hybrid models for dyadic longitudinal data with non-ignorable dropouts. Biometrics. 2013 Dec; 69(4):914-24. PMID: 24328715.
      View in: PubMed
    3. Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet. 2013 Oct; 45(10):1113-20. PMID: 24071849.
      View in: PubMed
    4. Srivastava S, Wang W, Manyam G, Ordonez C, Baladandayuthapani V. Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. EURASIP J Bioinform Syst Biol. 2013 Jun 28; 2013(1):9. PMID: 23809014.
      View in: PubMed
    5. Ahn J, Yuan Y, Parmigiani G, Suraokar MB, Diao L, Wistuba II, Wang W. DeMix: deconvolution for mixed cancer transcriptomes using raw measured data. Bioinformatics. 2013 Aug 01; 29(15):1865-71. PMID: 23712657.
      View in: PubMed
    6. Peng G, Fan Y, Palculict TB, Shen P, Ruteshouser EC, Chi AK, Davis RW, Huff V, Scharfe C, Wang W. Rare variant detection using family-based sequencing analysis. Proc Natl Acad Sci U S A. 2013 Mar 05; 110(10):3985-90. PMID: 23426633.
      View in: PubMed
    7. Zhang N, Xu Y, O'Hely M, Speed TP, Scharfe C, Wang W. SRMA: an R package for resequencing array data analysis. Bioinformatics. 2012 Jul 15; 28(14):1928-30. PMID: 22581181.
      View in: PubMed
    8. Hua Y, Gorshkov K, Yang Y, Wang W, Zhang N, Hughes DP. Slow down to stay alive: HER4 protects against cellular stress and confers chemoresistance in neuroblastoma. Cancer. 2012 Oct 15; 118(20):5140-54. PMID: 22415601.
      View in: PubMed
    9. Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. High-quality DNA sequence capture of 524 disease candidate genes. Proc Natl Acad Sci U S A. 2011 Apr 19; 108(16):6549-54. PMID: 21467225.
      View in: PubMed
    10. Lin S, Wang W, Palm C, Davis RW, Juneau K. A molecular inversion probe assay for detecting alternative splicing. BMC Genomics. 2010 Dec 17; 11:712. PMID: 21167051.
      View in: PubMed
    11. Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Res. 2011 Jan; 39(1):44-58. PMID: 20843780.
      View in: PubMed
    12. Wang W, Niendorf KB, Patel D, Blackford A, Marroni F, Sober AJ, Parmigiani G, Tsao H. Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO. Cancer Res. 2010 Jan 15; 70(2):552-9. PMID: 20068151.
      View in: PubMed
    13. Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA. Estimating genome-wide copy number using allele-specific mixture models. J Comput Biol. 2008 Sep; 15(7):857-66. PMID: 18707534.
      View in: PubMed
    14. Wang W, Chen S, Brune KA, Hruban RH, Parmigiani G, Klein AP. PancPRO: risk assessment for individuals with a family history of pancreatic cancer. J Clin Oncol. 2007 Apr 10; 25(11):1417-22. PMID: 17416862.
      View in: PubMed
    15. González JR, Wang W, Ballana E, Estivill X. A recessive Mendelian model to predict carrier probabilities of DFNB1 for nonsyndromic deafness. Hum Mutat. 2006 Nov; 27(11):1135-42. PMID: 16941638.
      View in: PubMed
    16. Chen S, Wang W, Lee S, Nafa K, Lee J, Romans K, Watson P, Gruber SB, Euhus D, Kinzler KW, Jass J, Gallinger S, Lindor NM, Casey G, Ellis N, Giardiello FM, Offit K, Parmigiani G. Prediction of germline mutations and cancer risk in the Lynch syndrome. JAMA. 2006 Sep 27; 296(12):1479-87. PMID: 17003396.
      View in: PubMed
    17. Xu Z, Sproul A, Wang W, Kukekov N, Greene LA. Siah1 interacts with the scaffold protein POSH to promote JNK activation and apoptosis. J Biol Chem. 2006 Jan 06; 281(1):303-12. PMID: 16230351.
      View in: PubMed
    18. In reply [13]. Journal of Clinical Oncology. 25:5337-5338.
    19. The Molecular Taxonomy of Primary Prostate Cancer. Cell. 163:1011-1025.
    20. Estimating genome-wide copy number using allele specific mixture models. 137-150.
    21. Multiplex target capture with double-stranded DNA probes. Genome Medicine. 5.
    22. Identification of germline DICER1 mutations and loss of heterozygosity in familial Wilms tumour. Journal of Medical Genetics. 53:385-388.
    23. Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis. Journal of Molecular Diagnostics. 18:267-282.
    24. Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines. 18-21.
    25. An ensemble approach to accurately detect somatic mutations using SomaticSeq. Genome Biology. 16.
    26. Bayesian variable selection for binary outcomes in high-dimensional genomic studies using non-local priors. Bioinformatics. 32:1338-1345.
    27. BayesMendel. Statistical Applications in Genetics and Molecular Biology. 3.
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