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BO PENG

TitleAssistant Professor
InstitutionMD Anderson
DepartmentBioinformatics & Computational Biology
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    R01HG008972     (LEAL, SUZANNE MARGARET)Jun 14, 2016 - Mar 31, 2020
    NIH/NHGRI
    Computational tools for sequence-based large-scale epidemiology studies
    Role: Co-Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Wei C, Peng B, Han Y, Chen WV, Rother J, Tomlinson GE, Boland CR, Chaussabel D, Chaussabel M, Frazier ML, Amos CI. Mutations of HNRNPA0 and WIF1 predispose members of a large family to multiple cancers. Fam Cancer. 2015 Jun; 14(2):297-306. PMID: 25716654.
      View in: PubMed
    2. Wei C, Peng B, Han Y, Chen WV, Rother J, Tomlinson GE, Richard Boland C, Chaussabel D, Frazier ML, Amos CI. Erratum to: Mutations of HNRNPA0 and WIF1 predispose members of a large family to multiple cancers. Fam Cancer. 2015 Jun; 14(2):307. PMID: 25820142.
      View in: PubMed
    3. Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Gillanders E, Feuer EJ. Genetic data simulators and their applications: an overview. Genet Epidemiol. 2015 Jan; 39(1):2-10. PMID: 25504286.
      View in: PubMed
    4. Peng B. Reproducible simulations of realistic samples for next-generation sequencing studies using Variant Simulation Tools. Genet Epidemiol. 2015 Jan; 39(1):45-52. PMID: 25395236.
      View in: PubMed
    5. Wang GT, Peng B, Leal SM. Variant association tools for quality control and analysis of large-scale sequence and genotyping array data. Am J Hum Genet. 2014 May 01; 94(5):770-83. PMID: 24791902.
      View in: PubMed
    6. Wang GT, Li B, Santos-Cortez RP, Peng B, Leal SM. Power analysis and sample size estimation for sequence-based association studies. Bioinformatics. 2014 Aug 15; 30(16):2377-8. PMID: 24778108.
      View in: PubMed
    7. Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. 2014 Mar 20; 507(7492):315-22. PMID: 24476821.
      View in: PubMed
    8. Miller FW, Cooper RG, Vencovsk√Ĺ J, Rider LG, Danko K, Wedderburn LR, Lundberg IE, Pachman LM, Reed AM, Ytterberg SR, Padyukov L, Selva-O'Callaghan A, Radstake TR, Isenberg DA, Chinoy H, Ollier WE, O'Hanlon TP, Peng B, Lee A, Lamb JA, Chen W, Amos CI, Gregersen PK. Genome-wide association study of dermatomyositis reveals genetic overlap with other autoimmune disorders. Arthritis Rheum. 2013 Dec; 65(12):3239-47. PMID: 23983088.
      View in: PubMed
    9. Dawson JA, Dhurandhar EJ, Vazquez AI, Peng B, Allison DB. Propagation of obesity across generations: the roles of differential realized fertility and assortative mating by body mass index. Hum Hered. 2013; 75(2-4):204-12. PMID: 24081235.
      View in: PubMed
    10. Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Clarke L, Gillanders E, Feuer EJ. Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators. Bioinformatics. 2013 Apr 15; 29(8):1101-2. PMID: 23435068.
      View in: PubMed
    11. Vasemägi A, Nilsson J, McGinnity P, Cross T, O'Reilly P, Glebe B, Peng B, Berg PR, Primmer CR. Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon. Comp Funct Genomics. 2012; 2012:628204. PMID: 23326209.
      View in: PubMed
    12. Gorlova OY, Ying J, Amos CI, Spitz MR, Peng B, Gorlov IP. Derived SNP alleles are used more frequently than ancestral alleles as risk-associated variants in common human diseases. J Bioinform Comput Biol. 2012 Apr; 10(2):1241008. PMID: 22809343.
      View in: PubMed
    13. San Lucas FA, Wang G, Scheet P, Peng B. Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools. Bioinformatics. 2012 Feb 01; 28(3):421-2. PMID: 22138362.
      View in: PubMed
    14. Xu Y, Peng B, Fu Y, Amos CI. Genome-wide algorithm for detecting CNV associations with diseases. BMC Bioinformatics. 2011 Aug 09; 12:331. PMID: 21827692.
      View in: PubMed
    15. Peng B, Liu X. Simulating sequences of the human genome with rare variants. Hum Hered. 2010; 70(4):287-91. PMID: 21212684.
      View in: PubMed
    16. Peng B, Amos CI. Forward-time simulation of realistic samples for genome-wide association studies. BMC Bioinformatics. 2010 Sep 01; 11:442. PMID: 20809983.
      View in: PubMed
    17. Peng B, Li B, Han Y, Amos CI. Power analysis for case-control association studies of samples with known family histories. Hum Genet. 2010 Jun; 127(6):699-704. PMID: 20383776.
      View in: PubMed
    18. Peng B. Simulating gene-environment interactions in complex human diseases. Genome Med. 2010 Mar 23; 2(3):21. PMID: 20346093.
      View in: PubMed
    19. Gu X, Frankowski RF, Rosner GL, Relling M, Peng B, Amos CI. A modified forward multiple regression in high-density genome-wide association studies for complex traits. Genet Epidemiol. 2009 Sep; 33(6):518-25. PMID: 19365845.
      View in: PubMed
    20. Wu CC, Shete S, Chen WV, Peng B, Lee AT, Ma J, Gregersen PK, Amos CI. Detection of disease-associated deletions in case-control studies using SNP genotypes with application to rheumatoid arthritis. Hum Genet. 2009 Aug; 126(2):303-15. PMID: 19415332.
      View in: PubMed
    21. Peng B, Amos CI. Forward-time simulations of non-random mating populations using simuPOP. Bioinformatics. 2008 Jun 01; 24(11):1408-9. PMID: 18417488.
      View in: PubMed
    22. Peng B, Yu RK, Dehoff KL, Amos CI. Normalizing a large number of quantitative traits using empirical normal quantile transformation. BMC Proc. 2007; 1 Suppl 1:S156. PMID: 18466501.
      View in: PubMed
    23. Peng B, Amos CI, Kimmel M. Forward-time simulations of human populations with complex diseases. PLoS Genet. 2007 Mar 23; 3(3):e47. PMID: 17381243.
      View in: PubMed
    24. Peng B, Kimmel M. Simulations provide support for the common disease-common variant hypothesis. Genetics. 2007 Feb; 175(2):763-76. PMID: 17151262.
      View in: PubMed
    25. Peng B, Kimmel M. simuPOP: a forward-time population genetics simulation environment. Bioinformatics. 2005 Sep 15; 21(18):3686-7. PMID: 16020469.
      View in: PubMed
    26. Gorlova O, Peng B, Yankelevitz D, Henschke C, Kimmel M. Estimating the growth rates of primary lung tumours from samples with missing measurements. Stat Med. 2005 Apr 15; 24(7):1117-34. PMID: 15568189.
      View in: PubMed
    27. Pusztai L, Gregory BW, Baggerly KA, Peng B, Koomen J, Kuerer HM, Esteva FJ, Symmans WF, Wagner P, Hortobagyi GN, Laronga C, Semmes OJ, Wright GL, Drake RR, Vlahou A. Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma. Cancer. 2004 May 01; 100(9):1814-22. PMID: 15112261.
      View in: PubMed
    28. Forward-Time Population Genetics Simulations.
    29. WGSA. Journal of Medical Genetics. 53:111-112.
    30. Erratum. Familial Cancer. 14:307.
    31. Empirical estimation of sequencing error rates using smoothing splines. BMC Bioinformatics. 17.
    32. Genome sequencing in the cloud. 318-339.
    33. Genome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes. Genes and Immunity. 16:470-480.
    34. Using ascertainment for targeted resequencing to increase power to identify causal variants. Statistics and its Interface. 4:285-294.
    35. Mutations of HNRNPA0 and WIF1 predispose members of a large family to multiple cancers. Familial Cancer. 14:297-306.
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