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AMINA ANN QUTUB

TitleAdjunct Assistant Professor
InstitutionBaylor College of Medicine
DepartmentDepartment of Molecular Physiology & Biophysics
Address6500 Main, Room 613
Rice University, Dept. of Bioengineering
Houston TX 77030
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Noren DP, Long BL, Norel R, Rrhissorrakrai K, Hess K, Hu CW, Bisberg AJ, Schultz A, Engquist E, Liu L, Lin X, Chen GM, Xie H, Hunter GA, Boutros PC, Stepanov O. A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. PLoS Comput Biol. 2016 Jun; 12(6):e1004890. PMID: 27351836.
      View in: PubMed
    2. Schultz A, Qutub AA. Reconstruction of Tissue-Specific Metabolic Networks Using CORDA. PLoS Comput Biol. 2016 Mar; 12(3):e1004808. PMID: 26942765; PMCID: PMC4778931.
    3. Noren DP, Chou WH, Lee SH, Qutub AA, Warmflash A, Wagner DS, Popel AS, Levchenko A. Endothelial cells decode VEGF-mediated Ca2+ signaling patterns to produce distinct functional responses. Sci Signal. 2016 Feb 23; 9(416):ra20. PMID: 26905425.
      View in: PubMed
    4. Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ. Inferring causal molecular networks: empirical assessment through a community-based effort. Nat Methods. 2016 Apr; 13(4):310-8. PMID: 26901648; PMCID: PMC4854847 [Available on 08/22/16].
    5. Hu CW, Kornblau SM, Slater JH, Qutub AA. Progeny Clustering: A Method to Identify Biological Phenotypes. Sci Rep. 2015; 5:12894. PMID: 26267476.
      View in: PubMed
    6. Slater JH, Culver JC, Long BL, Hu CW, Hu J, Birk TF, Qutub AA, Dickinson ME, West JL. Recapitulation and Modulation of the Cellular Architecture of a User-Chosen Cell of Interest Using Cell-Derived, Biomimetic Patterning. ACS Nano. 2015 Jun 23; 9(6):6128-38. PMID: 25988713.
      View in: PubMed
    7. Lin KW, Liao A, Qutub AA. Simulation predicts IGFBP2-HIF1? interaction drives glioblastoma growth. PLoS Comput Biol. 2015 Apr; 11(4):e1004169. PMID: 25884993; PMCID: PMC4401766.
    8. Schultz A, Qutub AA. Predicting internal cell fluxes at sub-optimal growth. BMC Syst Biol. 2015; 9:18. PMID: 25890056; PMCID: PMC4397736.
    9. Kornblau SM, Qutub A, Yao H, York H, Qiu YH, Graber D, Ravandi F, Cortes J, Andreeff M, Zhang N, Coombes KR. Proteomic profiling identifies distinct protein patterns in acute myelogenous leukemia CD34+CD38- stem-like cells. PLoS One. 2013; 8(10):e78453. PMID: 24223100; PMCID: PMC3816767.
    10. Rekhi R, Qutub AA. Systems approaches for synthetic biology: a pathway toward mammalian design. Front Physiol. 2013; 4:285. PMID: 24130532; PMCID: PMC3793170.
    11. Long BL, Rekhi R, Abrego A, Jung J, Qutub AA. Cells as state machines: cell behavior patterns arise during capillary formation as a function of BDNF and VEGF. J Theor Biol. 2013 Jun 7; 326:43-57. PMID: 23266714.
      View in: PubMed
    12. Schweller RM, Zimak J, Duose DY, Qutub AA, Hittelman WN, Diehl MR. Multiplexed in situ immunofluorescence using dynamic DNA complexes. Angew Chem Int Ed Engl. 2012 Sep 10; 51(37):9292-6. PMID: 22893271; PMCID: PMC3517005.
    13. York H, Kornblau SM, Qutub AA. Network analysis of reverse phase protein expression data: characterizing protein signatures in acute myeloid leukemia cytogenetic categories t(8;21) and inv(16). Proteomics. 2012 Jul; 12(13):2084-93. PMID: 22623292; PMCID: PMC4376995.
    14. Kornblau SM, Qiu YH, Zhang N, Singh N, Faderl S, Ferrajoli A, York H, Qutub AA, Coombes KR, Watson DK. Abnormal expression of FLI1 protein is an adverse prognostic factor in acute myeloid leukemia. Blood. 2011 Nov 17; 118(20):5604-12. PMID: 21917756; PMCID: PMC3217360.
    15. Liu G, Qutub AA, Vempati P, Mac Gabhann F, Popel AS. Module-based multiscale simulation of angiogenesis in skeletal muscle. Theor Biol Med Model. 2011; 8:6. PMID: 21463529; PMCID: PMC3079676.
    16. Stefanini MO, Qutub AA, Mac Gabhann F, Popel AS. Computational models of VEGF-associated angiogenic processes in cancer. Math Med Biol. 2012 Mar; 29(1):85-94. PMID: 21266494; PMCID: PMC4104688.
    17. Mac Gabhann F, Qutub AA, Annex BH, Popel AS. Systems biology of pro-angiogenic therapies targeting the VEGF system. Wiley Interdiscip Rev Syst Biol Med. 2010 Nov-Dec; 2(6):694-707. PMID: 20890966; PMCID: PMC2990677.
    18. Qutub AA, Mac Gabhann F, Karagiannis ED, Vempati P, Popel AS. Multiscale models of angiogenesis. IEEE Eng Med Biol Mag. 2009 Mar-Apr; 28(2):14-31. PMID: 19349248; PMCID: PMC3077679.
    19. Qutub AA, Popel AS. Elongation, proliferation & migration differentiate endothelial cell phenotypes and determine capillary sprouting. BMC Syst Biol. 2009; 3:13. PMID: 19171061; PMCID: PMC2672076.
    20. Qutub AA, Liu G, Vempati P, Popel AS. Integration of angiogenesis modules at multiple scales: from molecular to tissue. Pac Symp Biocomput. 2009; 316-27. PMID: 19209711; PMCID: PMC3077677.
    21. Qutub AA, Popel AS. Reactive oxygen species regulate hypoxia-inducible factor 1alpha differentially in cancer and ischemia. Mol Cell Biol. 2008 Aug; 28(16):5106-19. PMID: 18559422; PMCID: PMC2519710.
    22. Qutub AA, Popel AS. Three autocrine feedback loops determine HIF1 alpha expression in chronic hypoxia. Biochim Biophys Acta. 2007 Oct; 1773(10):1511-25. PMID: 17720260; PMCID: PMC2094118.
    23. Qutub AA, Popel AS. A computational model of intracellular oxygen sensing by hypoxia-inducible factor HIF1 alpha. J Cell Sci. 2006 Aug 15; 119(Pt 16):3467-80. PMID: 16899821; PMCID: PMC2129128.
    24. Qutub AA, Hunt CA. Glucose transport to the brain: a systems model. Brain Res Brain Res Rev. 2005 Nov; 49(3):595-617. PMID: 16269321.
      View in: PubMed
    25. Wong DY, Qutub A, Hunt CA. Modeling transport kinetics with StarLogo. Conf Proc IEEE Eng Med Biol Soc. 2004; 2:845-8. PMID: 17271809.
      View in: PubMed
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